Single cell RNA sequencing of colorectal cancer with diverse tissue dissociation protocols or fresh vs. frozen cell preparations.
To evaluate 3 different tissue dissociation protocols or fresh vs. frozen cell preparations, we performed single-cell RNA sequencing on cancer or distant normal tissue dissociates from 2 colorectal cancer patients. Total 18,409 cells from 10 sample preparations were analyzed (5 primary colorectal cancer and 5 matched normal mucosa). The results suggest highly consistent cellular proportions were recovered with different sample preparation methods.
- 10 samples
- DAC: EGAC00001001277
- Technology: Illumina HiSeq 2500
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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
Study ID | Study Title | Study Type |
---|---|---|
RNASeq |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
ID | File Type | Size | Located in | |
---|---|---|---|---|
EGAF00002540137 | fastq.gz | 2.0 GB | ||
EGAF00002540138 | fastq.gz | 2.0 GB | ||
EGAF00002540139 | fastq.gz | 2.4 GB | ||
EGAF00002540140 | fastq.gz | 2.4 GB | ||
EGAF00002540141 | fastq.gz | 436.8 MB | ||
EGAF00002540142 | fastq.gz | 431.7 MB | ||
EGAF00002540143 | fastq.gz | 3.1 GB | ||
EGAF00002540144 | fastq.gz | 3.1 GB | ||
EGAF00002540145 | fastq.gz | 3.6 GB | ||
EGAF00002540146 | fastq.gz | 3.5 GB | ||
EGAF00002540147 | fastq.gz | 288.9 MB | ||
EGAF00002540148 | fastq.gz | 286.8 MB | ||
EGAF00002540149 | fastq.gz | 1.9 GB | ||
EGAF00002540150 | fastq.gz | 1.9 GB | ||
EGAF00002540151 | fastq.gz | 2.2 GB | ||
EGAF00002540152 | fastq.gz | 2.2 GB | ||
EGAF00002540153 | fastq.gz | 311.2 MB | ||
EGAF00002540154 | fastq.gz | 308.1 MB | ||
EGAF00002540155 | fastq.gz | 2.1 GB | ||
EGAF00002540156 | fastq.gz | 2.1 GB | ||
EGAF00002540157 | fastq.gz | 2.4 GB | ||
EGAF00002540158 | fastq.gz | 2.4 GB | ||
EGAF00002540159 | fastq.gz | 445.0 MB | ||
EGAF00002540160 | fastq.gz | 451.5 MB | ||
EGAF00002540161 | fastq.gz | 3.1 GB | ||
EGAF00002540162 | fastq.gz | 3.2 GB | ||
EGAF00002540163 | fastq.gz | 3.6 GB | ||
EGAF00002540164 | fastq.gz | 3.6 GB | ||
EGAF00002540165 | fastq.gz | 372.6 MB | ||
EGAF00002540166 | fastq.gz | 377.8 MB | ||
EGAF00002540167 | fastq.gz | 2.6 GB | ||
EGAF00002540168 | fastq.gz | 2.6 GB | ||
EGAF00002540169 | fastq.gz | 3.0 GB | ||
EGAF00002540170 | fastq.gz | 3.0 GB | ||
EGAF00002540171 | fastq.gz | 323.7 MB | ||
EGAF00002540172 | fastq.gz | 321.3 MB | ||
EGAF00002540173 | fastq.gz | 2.1 GB | ||
EGAF00002540174 | fastq.gz | 2.1 GB | ||
EGAF00002540175 | fastq.gz | 2.5 GB | ||
EGAF00002540176 | fastq.gz | 2.4 GB | ||
EGAF00002540177 | fastq.gz | 286.2 MB | ||
EGAF00002540178 | fastq.gz | 283.9 MB | ||
EGAF00002540179 | fastq.gz | 1.9 GB | ||
EGAF00002540180 | fastq.gz | 1.9 GB | ||
EGAF00002540181 | fastq.gz | 2.2 GB | ||
EGAF00002540182 | fastq.gz | 2.2 GB | ||
EGAF00002540183 | fastq.gz | 307.0 MB | ||
EGAF00002540184 | fastq.gz | 303.9 MB | ||
EGAF00002540185 | fastq.gz | 2.1 GB | ||
EGAF00002540186 | fastq.gz | 2.0 GB | ||
EGAF00002540187 | fastq.gz | 2.4 GB | ||
EGAF00002540188 | fastq.gz | 2.4 GB | ||
EGAF00002540189 | fastq.gz | 431.4 MB | ||
EGAF00002540190 | fastq.gz | 426.0 MB | ||
EGAF00002540191 | fastq.gz | 3.0 GB | ||
EGAF00002540192 | fastq.gz | 3.0 GB | ||
EGAF00002540193 | fastq.gz | 3.5 GB | ||
EGAF00002540194 | fastq.gz | 3.5 GB | ||
EGAF00002540195 | fastq.gz | 304.5 MB | ||
EGAF00002540196 | fastq.gz | 301.9 MB | ||
60 Files (110.2 GB) |