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Whole genome sequencing of 40 rainforest hunter-gatherers and neighbouring farmers from Central Africa

Exome sequencing of 20 rainforest hunter-gatherers (RHG) and 20 neighbouring farmers (AGR) from western central Africa was performed using 101-bp paired-end reads on Illumina HiSeq 2000. All individuals presented very low rates of missing values ranging from 0.5% to 4%, and a mean depth of coverage of 6.5× (ranging from 4× to 13×)(Lopez et al., Curr Biol 2019).

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The data reported in this project must be used only for research, academic purposes. The data requester and its Institution agrees to preserve, at all times, the confidentiality and security of the data. Every data access request will be reviewed by the DAC of Institut Pasteur.

1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify Institut Pasteur within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify Institut Pasteur prior to any significant changes to the protocol for the Project. 14. The User Institution will notify Institut Pasteur as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. Institut Pasteur may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than Institut Pasteur. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of France and shall be subject to the exclusive jurisdiction of the French courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001003722 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002537215 bam 47.0 GB
EGAF00002537216 bam 57.3 GB
EGAF00002537217 bam 23.2 GB
EGAF00002537218 bam 24.7 GB
EGAF00002537219 bam 20.4 GB
EGAF00002537220 bam 15.4 GB
EGAF00002537221 bam 50.7 GB
EGAF00002537390 bam 25.8 GB
EGAF00002537391 bam 27.6 GB
EGAF00002537392 bam 22.1 GB
EGAF00002537393 bam 25.2 GB
EGAF00002537394 bam 24.6 GB
EGAF00002537395 bam 22.9 GB
EGAF00002537396 bam 21.8 GB
EGAF00002537397 bam 15.3 GB
EGAF00002537398 bam 17.8 GB
EGAF00002537399 bam 25.9 GB
EGAF00002537400 bam 30.6 GB
EGAF00002537401 bam 23.0 GB
EGAF00002537402 bam 24.4 GB
EGAF00002537403 bam 25.2 GB
EGAF00002537404 bam 24.2 GB
EGAF00002537405 bam 18.2 GB
EGAF00002537406 bam 19.9 GB
EGAF00002537407 bam 19.9 GB
EGAF00002537408 bam 35.6 GB
EGAF00002537409 bam 19.6 GB
EGAF00002537410 bam 25.3 GB
EGAF00002537411 bam 15.2 GB
EGAF00002537412 bam 24.7 GB
EGAF00002537413 bam 23.4 GB
EGAF00002537588 bam 21.3 GB
EGAF00002537589 bam 23.0 GB
EGAF00002537590 bam 24.0 GB
EGAF00002537591 bam 22.0 GB
EGAF00002537592 bam 11.4 GB
EGAF00002537593 bam 14.6 GB
EGAF00002537594 bam 17.2 GB
EGAF00002537595 bam 23.1 GB
EGAF00002537596 bam 22.4 GB
EGAF00002537597 bam 20.8 GB
41 Files (996.4 GB)