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Dataset of RNA-sequencing of childhood acute myeloid leukemia

This dataset includes 139 bam files of mRNA sequencing. All subjects are tumor samples of pediatric acute myeloid leukemia.

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Data access policy of RNA sequencing of childhood acute myeloid leukemia

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom Department of Pathology and Tumor Biology, Kyoto University Data Access Committee grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: Department of Pathology and Tumor Biology, Kyoto University and the collaborators listed in Appendix I responsible for the development, organization, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify Department of Pathology and Tumor Biology, Kyoto University Data Access Committee within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify Department of Pathology and Tumor Biology, Kyoto University Data Access Committee prior to any significant changes to the protocol for the Project. 14. The User Institution will notify Department of Pathology and Tumor Biology, Kyoto University Data Access Committee as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. Department of Pathology and Tumor Biology, Kyoto University Data Access Committee may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than Department of Pathology and Tumor Biology, Kyoto University. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of Japan and shall be subject to the exclusive jurisdiction of the Japanese courts.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
RNASeq

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002490715 bam 9.3 GB
EGAF00002490716 bam 7.7 GB
EGAF00002490717 bam 7.3 GB
EGAF00002490718 bam 8.1 GB
EGAF00002490719 bam 7.9 GB
EGAF00002490720 bam 7.4 GB
EGAF00002490721 bam 8.0 GB
EGAF00002490722 bam 8.7 GB
EGAF00002490723 bam 6.0 GB
EGAF00002490724 bam 10.0 GB
EGAF00002490725 bam 7.2 GB
EGAF00002490726 bam 8.9 GB
EGAF00002490727 bam 10.8 GB
EGAF00002490728 bam 8.8 GB
EGAF00002490729 bam 9.1 GB
EGAF00002490730 bam 7.8 GB
EGAF00002490731 bam 8.6 GB
EGAF00002490732 bam 7.9 GB
EGAF00002490733 bam 7.8 GB
EGAF00002490734 bam 7.5 GB
EGAF00002490735 bam 7.9 GB
EGAF00002490736 bam 4.4 GB
EGAF00002490737 bam 4.5 GB
EGAF00002490738 bam 6.0 GB
EGAF00002490739 bam 7.6 GB
EGAF00002490740 bam 5.4 GB
EGAF00002490741 bam 6.8 GB
EGAF00002490742 bam 8.6 GB
EGAF00002490743 bam 9.6 GB
EGAF00002490744 bam 7.1 GB
EGAF00002490745 bam 9.7 GB
EGAF00002490746 bam 5.6 GB
EGAF00002490747 bam 9.4 GB
EGAF00002490748 bam 6.0 GB
EGAF00002490749 bam 5.6 GB
EGAF00002490750 bam 8.3 GB
EGAF00002490751 bam 5.0 GB
EGAF00002490752 bam 5.8 GB
EGAF00002490753 bam 5.4 GB
EGAF00002490754 bam 8.0 GB
EGAF00002490755 bam 5.7 GB
EGAF00002490756 bam 6.3 GB
EGAF00002490757 bam 6.8 GB
EGAF00002490758 bam 7.0 GB
EGAF00002490759 bam 7.2 GB
EGAF00002490760 bam 6.7 GB
EGAF00002490761 bam 4.8 GB
EGAF00002490762 bam 7.9 GB
EGAF00002490763 bam 7.1 GB
EGAF00002490764 bam 7.9 GB
EGAF00002490765 bam 7.3 GB
EGAF00002490766 bam 8.1 GB
EGAF00002490767 bam 6.7 GB
EGAF00002490768 bam 7.0 GB
EGAF00002490769 bam 8.5 GB
EGAF00002490770 bam 5.6 GB
EGAF00002490771 bam 4.9 GB
EGAF00002490772 bam 8.5 GB
EGAF00002490773 bam 6.3 GB
EGAF00002490774 bam 6.2 GB
EGAF00002490775 bam 4.5 GB
EGAF00002490776 bam 4.3 GB
EGAF00002490777 bam 4.3 GB
EGAF00002490778 bam 5.5 GB
EGAF00002490779 bam 4.9 GB
EGAF00002490780 bam 5.5 GB
EGAF00002490781 bam 5.6 GB
EGAF00002490782 bam 7.9 GB
EGAF00002490783 bam 8.6 GB
EGAF00002490784 bam 8.1 GB
EGAF00002490785 bam 7.9 GB
EGAF00002490786 bam 5.2 GB
EGAF00002490787 bam 7.8 GB
EGAF00002490788 bam 8.9 GB
EGAF00002490789 bam 9.3 GB
EGAF00002490790 bam 7.5 GB
EGAF00002490791 bam 7.8 GB
EGAF00002490792 bam 9.1 GB
EGAF00002490793 bam 7.2 GB
EGAF00002490794 bam 10.0 GB
EGAF00002490795 bam 4.7 GB
EGAF00002490796 bam 7.7 GB
EGAF00002490797 bam 8.2 GB
EGAF00002490798 bam 11.2 GB
EGAF00002490799 bam 6.7 GB
EGAF00002490800 bam 6.7 GB
EGAF00002490801 bam 9.2 GB
EGAF00002490802 bam 9.0 GB
EGAF00002490803 bam 8.7 GB
EGAF00002490804 bam 6.4 GB
EGAF00002490805 bam 6.7 GB
EGAF00002490806 bam 8.8 GB
EGAF00002490807 bam 7.1 GB
EGAF00002490808 bam 7.3 GB
EGAF00002490809 bam 8.8 GB
EGAF00002490810 bam 8.4 GB
EGAF00002490811 bam 6.1 GB
EGAF00002490812 bam 7.9 GB
EGAF00002490813 bam 7.7 GB
EGAF00002490814 bam 8.0 GB
EGAF00002490815 bam 8.2 GB
EGAF00002490816 bam 8.8 GB
EGAF00002490817 bam 7.9 GB
EGAF00002490818 bam 9.8 GB
EGAF00002490819 bam 8.1 GB
EGAF00002490820 bam 5.2 GB
EGAF00002490821 bam 8.3 GB
EGAF00002490822 bam 8.7 GB
EGAF00002490823 bam 5.1 GB
EGAF00002490824 bam 7.5 GB
EGAF00002490825 bam 8.7 GB
EGAF00002490826 bam 7.8 GB
EGAF00002490827 bam 7.8 GB
EGAF00002490828 bam 8.2 GB
EGAF00002490829 bam 7.8 GB
EGAF00002490830 bam 7.4 GB
EGAF00002490831 bam 7.8 GB
EGAF00002490832 bam 8.1 GB
EGAF00002490833 bam 6.8 GB
EGAF00002490834 bam 7.7 GB
EGAF00002490835 bam 7.1 GB
EGAF00002490836 bam 5.2 GB
EGAF00002490837 bam 7.4 GB
EGAF00002490838 bam 9.2 GB
EGAF00002490839 bam 8.4 GB
EGAF00002490840 bam 7.5 GB
EGAF00002490841 bam 5.9 GB
EGAF00002490842 bam 10.2 GB
EGAF00002490843 bam 5.0 GB
EGAF00002490844 bam 7.1 GB
EGAF00002490845 bam 5.9 GB
EGAF00002490846 bam 5.2 GB
EGAF00002490847 bam 7.0 GB
EGAF00002490848 bam 6.8 GB
EGAF00002490849 bam 6.8 GB
EGAF00002490850 bam 4.1 GB
EGAF00002490851 bam 4.4 GB
EGAF00002490852 bam 6.6 GB
EGAF00002490853 bam 4.4 GB
139 Files (1.0 TB)