Investigation of mutational signatures associated with DNMT3A deficiency (2019-04-03)
Mutational signatures have been shown to be attributable to specific genetic contexts, such as mutations in DNA repair genes. DNMT3A is a DNA methyltransferase that helps maintain the DNA methylation pattern in a site-specific manner and may participate in DNA repair or the stress response. We have identified an adult individual who is a germline mosaic for a DNMT3A mutation. We have obtained clonal lymphoblastoid cells (LCLs) from the subject representing both WT and mutant lines grown in the same individual for >50 years. These clones represent a unique opportunity to examine the mutational impact of the DNMT3A mutation in a well-controlled setting. Our goal is to perform WGS on whole blood, representing the pool, as well as several WT and several mutant clones, in order to investigate the contribution of DNMT3A to mutation rates and signatures. . This dataset contains all the data available for this study on 2019-04-03.
- 9 samples
- DAC: EGAC00001000000
- Technology: HiSeq X Ten
- PUB DUO:0000019 (version: 2021-02-23)publication requiredThis data use modifier indicates that requestor agrees to make results of studies using the data available to the larger scientific community.
- US DUO:0000026 (version: 2021-02-23)user specific restrictionThis data use modifier indicates that use is limited to use by approved users.
- IS DUO:0000028 (version: 2021-02-23)institution specific restrictionThis data use modifier indicates that use is limited to use within an approved institution.
- GRU DUO:0000042 (version: 2021-02-23)general research useThis data use permission indicates that use is allowed for general research use for any research purpose.
Wellcome Trust Sanger Institute Cancer Genome Group Data Sharing Policy
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| Cancer Genomics |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00002038836 | cram | 3.7 GB | ||
| EGAF00002038837 | cram | 3.6 GB | ||
| EGAF00002038838 | cram | 4.1 GB | ||
| EGAF00002038839 | cram | 3.9 GB | ||
| EGAF00002038840 | cram | 4.0 GB | ||
| EGAF00002038841 | cram | 3.8 GB | ||
| EGAF00002038842 | cram | 3.8 GB | ||
| EGAF00002038843 | cram | 4.0 GB | ||
| EGAF00002038844 | cram | 4.1 GB | ||
| EGAF00002038845 | cram | 3.8 GB | ||
| EGAF00002038846 | cram | 3.7 GB | ||
| EGAF00002038847 | cram | 4.2 GB | ||
| EGAF00002038848 | cram | 4.1 GB | ||
| EGAF00002038849 | cram | 4.1 GB | ||
| EGAF00002038850 | cram | 3.9 GB | ||
| EGAF00002039083 | cram | 4.0 GB | ||
| EGAF00002039084 | cram | 4.1 GB | ||
| EGAF00002039085 | cram | 4.2 GB | ||
| EGAF00002039086 | cram | 3.9 GB | ||
| EGAF00002039087 | cram | 3.8 GB | ||
| EGAF00002039088 | cram | 4.3 GB | ||
| EGAF00002039089 | cram | 4.1 GB | ||
| EGAF00002039090 | cram | 4.2 GB | ||
| EGAF00002039091 | cram | 4.0 GB | ||
| EGAF00002039092 | cram | 4.0 GB | ||
| EGAF00002039093 | cram | 4.2 GB | ||
| EGAF00002039094 | cram | 4.3 GB | ||
| EGAF00002039095 | cram | 3.8 GB | ||
| EGAF00002039096 | cram | 3.7 GB | ||
| EGAF00002039097 | cram | 4.2 GB | ||
| EGAF00002039098 | cram | 4.1 GB | ||
| EGAF00002039099 | cram | 4.1 GB | ||
| EGAF00002039100 | cram | 3.9 GB | ||
| EGAF00002039101 | cram | 3.9 GB | ||
| EGAF00002039102 | cram | 4.1 GB | ||
| EGAF00002039103 | cram | 4.2 GB | ||
| EGAF00002039104 | cram | 3.9 GB | ||
| EGAF00002039105 | cram | 3.8 GB | ||
| EGAF00002039106 | cram | 4.3 GB | ||
| EGAF00002039107 | cram | 4.1 GB | ||
| EGAF00002039108 | cram | 4.2 GB | ||
| EGAF00002039109 | cram | 4.0 GB | ||
| EGAF00002039110 | cram | 4.0 GB | ||
| EGAF00002039111 | cram | 4.2 GB | ||
| EGAF00002039344 | cram | 4.3 GB | ||
| EGAF00002039345 | cram | 3.9 GB | ||
| EGAF00002039346 | cram | 3.8 GB | ||
| EGAF00002039347 | cram | 4.3 GB | ||
| EGAF00002039348 | cram | 4.1 GB | ||
| EGAF00002039349 | cram | 4.1 GB | ||
| EGAF00002039350 | cram | 4.0 GB | ||
| EGAF00002039351 | cram | 4.0 GB | ||
| EGAF00002039352 | cram | 4.2 GB | ||
| EGAF00002039353 | cram | 4.3 GB | ||
| EGAF00002039354 | cram | 3.8 GB | ||
| EGAF00002039355 | cram | 3.8 GB | ||
| EGAF00002039356 | cram | 4.3 GB | ||
| EGAF00002039357 | cram | 4.1 GB | ||
| EGAF00002039358 | cram | 4.2 GB | ||
| EGAF00002039359 | cram | 4.0 GB | ||
| EGAF00002039360 | cram | 4.0 GB | ||
| EGAF00002039361 | cram | 4.2 GB | ||
| EGAF00002039362 | cram | 4.3 GB | ||
| EGAF00002039363 | cram | 3.7 GB | ||
| EGAF00002039364 | cram | 3.6 GB | ||
| EGAF00002039365 | cram | 4.1 GB | ||
| EGAF00002039366 | cram | 4.0 GB | ||
| EGAF00002039367 | cram | 4.0 GB | ||
| EGAF00002039368 | cram | 3.9 GB | ||
| EGAF00002039369 | cram | 3.9 GB | ||
| EGAF00002039370 | cram | 4.0 GB | ||
| EGAF00002039371 | cram | 4.1 GB | ||
| EGAF00002044051 | cram | 4.1 GB | ||
| EGAF00002044052 | cram | 4.0 GB | ||
| EGAF00002044053 | cram | 4.5 GB | ||
| EGAF00002044054 | cram | 4.3 GB | ||
| EGAF00002044055 | cram | 4.4 GB | ||
| EGAF00002044056 | cram | 4.2 GB | ||
| EGAF00002044057 | cram | 4.2 GB | ||
| EGAF00002044058 | cram | 4.4 GB | ||
| EGAF00002044059 | cram | 4.5 GB | ||
| 81 Files (327.8 GB) | ||||