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24 Chordoma samples (WES,WGS)

Case series of the rare tumor entity chordoma. 9 cases sequenced with Whole Exome Sequencing (WES) and 2 cases sequenced with Whole Genome Sequencing (WGS) were recruited from the personalized oncology program NCT-MASTER/DKTK-MASTER at the German Cancer Research Center. One of the WES patients was re-sequenced at a later time point when he relapsed, this resequencing was done by WGS. Therefore there are 11 patients, one of which with two samples, all of which were sequenced with matched normal controls, amounting to a total number of 24 NGS samples.

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Data Transfer Agreement for the German Cancer Research Center

To request access to the dataset please start a Data Access Request via the EGA DAC Portal. You will receive a HIPO DACO Info Form by email to collect information about the request, which has to be filled completely and signed by your PI. Your request will be evaluated by the responsible Data Access Committee (DAC) and our Data protection department (and innovation management if required). As soon as a positive decision is made, you will be provided with a data transfer agreement (DTA). After the DTA has been fully signed, access to the requested data is granted. To ensure that the process can be completed as quickly as possible, please note the following points: 1. The request in the EGA portal must be made by the responsible PI. 2. The information in the EGA portal must match the information on the HIPO DACO Info Form. In particular, the email address and the requested data sets must match. It is also important that all requested data sets are also listed on the HIPO DACO Info Form. For-profit companies are charged a fee per request.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002405854 bam 134.8 GB
EGAF00002405855 bam 139.3 GB
EGAF00002405856 bam 143.6 GB
EGAF00002405857 bam 121.9 GB
EGAF00002405858 bam 130.4 GB
EGAF00002405859 bam 134.9 GB
EGAF00002405860 bam 10.6 GB
EGAF00002405861 bam 12.6 GB
EGAF00002405862 bam 14.8 GB
EGAF00002405863 bam 11.1 GB
EGAF00002405864 bam 6.3 GB
EGAF00002405865 bam 5.8 GB
EGAF00002405866 bam 6.7 GB
EGAF00002405867 bam 5.5 GB
EGAF00002405868 bam 6.4 GB
EGAF00002405869 bam 5.1 GB
EGAF00002405870 bam 7.5 GB
EGAF00002405871 bam 6.9 GB
EGAF00002405872 bam 11.5 GB
EGAF00002405873 bam 8.7 GB
EGAF00002405874 bam 7.2 GB
EGAF00002405875 bam 7.4 GB
EGAF00002405876 bam 11.5 GB
EGAF00002405877 bam 9.6 GB
24 Files (960.1 GB)