SNV and indel calls from 8086 individuals in the British Autozygosity Populations BioResource dataset
This includes variant calls (single nucleotide variants and small insertions/deletions) from 8086 (mostly British Pakistani/British Bangladeshi) individuals from the following studies: 1. 3781 British Pakistani/British Bangladeshi adults from East London Genes and Health 2. 2791 British South Asian mothers from Born in Bradford 3. 1428 British South Asian adults from Birmingham 4. 86 individuals (mixed ancestries) from families with rare diseases, from Queen Mary University London All of the Birmingham and most of the Born in Bradford samples were previously sequenced as part of PMID: 26940866. Mapping was done with bwa-mem and variant calling was carried out with GATK HaplotypeCaller. We removed variant sites for which the following was true: SNPs: "QD < 2.0 || FS > 30 || MQ < 40.0 || MQRankSum < -12.5 || ReadPosRankSum < -8.0" Indels: "QD < 2.0 || FS > 30 || ReadPosRankSum < -20.0"
- DAC: EGAC00001000205
Wellcome Trust Sanger Institute Data Sharing Policy
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001001565 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00002338043 | vcf.gz | 2.6 GB | ||
| EGAF00002338044 | vcf.gz | 304.4 MB | ||
| EGAF00002338045 | vcf.gz | 2.3 GB | ||
| EGAF00002338046 | vcf.gz | 285.9 MB | ||
| EGAF00002338047 | vcf.gz | 3.1 GB | ||
| EGAF00002338048 | vcf.gz | 401.4 MB | ||
| EGAF00002338049 | vcf.gz | 3.1 GB | ||
| EGAF00002338050 | vcf.gz | 421.2 MB | ||
| EGAF00002338051 | vcf.gz | 2.6 GB | ||
| EGAF00002338052 | vcf.gz | 354.5 MB | ||
| EGAF00002338053 | vcf.gz | 2.3 GB | ||
| EGAF00002338054 | vcf.gz | 335.0 MB | ||
| EGAF00002338055 | vcf.gz | 3.4 GB | ||
| EGAF00002338056 | vcf.gz | 440.0 MB | ||
| EGAF00002338057 | vcf.gz | 4.4 GB | ||
| EGAF00002338058 | vcf.gz | 574.0 MB | ||
| EGAF00002338059 | vcf.gz | 1.6 GB | ||
| EGAF00002338060 | vcf.gz | 166.3 MB | ||
| EGAF00002338061 | vcf.gz | 715.5 MB | ||
| EGAF00002338062 | vcf.gz | 98.9 MB | ||
| EGAF00002338063 | vcf.gz | 1.7 GB | ||
| EGAF00002338064 | vcf.gz | 196.0 MB | ||
| EGAF00002338065 | vcf.gz | 5.9 GB | ||
| EGAF00002338066 | vcf.gz | 722.8 MB | ||
| EGAF00002338067 | vcf.gz | 4.4 GB | ||
| EGAF00002338068 | vcf.gz | 494.4 MB | ||
| EGAF00002338069 | vcf.gz | 927.0 MB | ||
| EGAF00002338070 | vcf.gz | 119.9 MB | ||
| EGAF00002338071 | vcf.gz | 3.7 GB | ||
| EGAF00002338072 | vcf.gz | 434.5 MB | ||
| EGAF00002338073 | vcf.gz | 3.1 GB | ||
| EGAF00002338074 | vcf.gz | 332.4 MB | ||
| EGAF00002338075 | vcf.gz | 2.1 GB | ||
| EGAF00002338076 | vcf.gz | 259.4 MB | ||
| EGAF00002338077 | vcf.gz | 2.1 GB | ||
| EGAF00002338078 | vcf.gz | 268.4 MB | ||
| EGAF00002338079 | vcf.gz | 1.1 GB | ||
| EGAF00002338080 | vcf.gz | 153.4 MB | ||
| EGAF00002338081 | vcf.gz | 3.3 GB | ||
| EGAF00002338082 | vcf.gz | 461.6 MB | ||
| EGAF00002338083 | vcf.gz | 3.8 GB | ||
| EGAF00002338084 | vcf.gz | 428.3 MB | ||
| EGAF00002338085 | vcf.gz | 2.5 GB | ||
| EGAF00002338086 | vcf.gz | 313.7 MB | ||
| EGAF00002338087 | txt | 609.4 kB | ||
| 45 Files (68.3 GB) | ||||