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Tumor-associated preferred end coordinates and somatic variants as signatures of circulating tumor DNA

Plasma DNA libraries were constructed from 4 mL of plasma without library enrichment, namely without PCR amplification. Paired-end massively parallel sequencing was performed

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Policy for Plasma DNA data sharing

The CUHK Circulating Nucleic Acids Research Group Data Access Agreement This agreement governs the terms and conditions on which access will be granted to users of the sequencing and genotyping data generated by The Chinese University of Hong Kong (CUHK) Circulating Nucleic Acids Research Group (CNARG). The terms and conditions of access set out in this agreement apply both to the User and the User’s Institution (both as defined below). User is referred to within the agreement as “You” and the term “Your” will be construed accordingly. By signing this agreement, You agree to be bound by the terms and conditions of access set out in this agreement. Definitions: Group means The Chinese University of Hong Kong (CUHK) Circulating Nucleic Acids Research Group (CNARG). Data means all and any human genetic data obtained by User or User’s Institution from the Group via the European Genome-phenome Archive. Data Subject means a person, who has been informed of the purpose for which the Data is held and has given his/her informed consent thereto. In the event that the Data Subject is legally incapable of giving an informed consent, such consent has been given by his/her legal guardian. User means a researcher whose User’s Institution has previously completed this Data Access Agreement and has received acknowledgement of its acceptance by the Group. Data Access Committee means a committee assigned by the Group for reviewing and approving the data access application of the User. The committee consists of three or more investigators from the Group. Publications means, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written, electronic, graphical, photographic, recorded (including oral recordings), and verbal presentations of research. User’s Institution means the organisation at which the User is employed, affiliated or enrolled. Terms and Conditions: By signing this agreement: 1. You agree to use the Data only for the advancement of medical and scientific research, according to the consent given by Data Subjects. 2. You agree not to use the Data for the creation of products for sale or for any commercial purpose. 3. You agree to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. In particular, You undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 4. You agree not to transfer or disclose the Data, in whole or in part, or any information/material derived from the Data, to others, except as reasonably necessary for data/safety monitoring or programme management. Should You wish to share the Data with a collaborator within the same User’s Institution, the collaborator must make a separate application for access to the Data. 5. You agree to use the Data for the approved purpose and project described in your application only; use of the Data for a new purpose or project will require a new application and approval. 6. You agree to acknowledge in any work based in whole or in part on the Data, the publications from which the Data derives, the version of the Data, and the role of the Group. The wordings of the acknowledgement are “This study makes use of data generated by The Chinese University of Hong Kong (CUHK) Circulating Nucleic Acids Research Group, as reported by Chan et al in Clinical Chemistry (doi:10.1373/clinchem.2012.196014). 7. You accept that the Group, the original data creators, depositors or copyright holders, or the funders of the Group: a) make no warranties or representations with respect to the Data, including but not limited to its fitness for purpose, accuracy or comprehensiveness, the continued access to the Data without interruption; and b) accept no liability for any direct, indirect, consequential, special or incidental, damages or losses arising from or in connection with the use of the Data or this agreement. 8. You understand and acknowledge that the Data is protected by copyright and other intellectual property rights, and that reproduction, except as reasonably required to carry out Your research with the Data in accordance with the approved purpose referred to in paragraph 5 above, or sale of all or part of the Data in any form is not permitted. 9. You agree that nothing in this agreement shall operate to transfer to You or to the User’s Institution any intellectual property rights relating to the Data. 10. You accept that this agreement will be terminated immediately by the Group without notice upon breach of any terms of this agreement by You and You agree to destroy any Data held when required. 11. You accept that it may be necessary for the Group or its appointed agent to alter the terms of this agreement from time to time in order to address new concerns. In this event, the Group or its appointed agent will to inform You of any changes. You agree that Your continued use of the Data shall be deemed to represent your consent to any revised terms of the Agreement. 12. You agree that you will submit a report to the Data Access Committee, if requested, on completion of the agreed purpose. The Data Access Committee agrees to treat the report and all information, data, results, and conclusions contained within such report as confidential information belonging to the User’s Institution. 13. You accept that the Data is protected by the privacy law in the relevant jurisdiction and that You are responsible for ensuring Your use of the Data is in compliance with any such applicable law. Notwithstanding the above, nothing in this agreement shall limit the rights of the Data Subjects under the Personal Data (Privacy) Ordinance (Cap 486) in Hong Kong. The Data Access Committee reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures in countries that have no national laws comparable to that which pertain in the Personal Data (Privacy) Ordinance in Hong Kong. 14. This agreement shall be construed, interpreted and governed by the laws of Hong Kong Special Administrative Region.   For and on behalf of User: Name of Applicant(s): _____________________________________ _____________________________________ _____________________________________ _____________________________________ Signature of Applicant(s): _____________________________________ _____________________________________ _____________________________________ _____________________________________ Date: _____________________________________ For and on behalf of User’s Institution: Signature of Institutional or Administrative Authority: ______________________________________ Print name: ______________________________________ User’s Institution: ______________________________________ Date: ¬¬¬¬¬¬¬¬¬¬¬¬¬¬¬¬¬¬¬______________________________________ WHEN SUBMITTING THIS DOCUMENT, PLEASE INCLUDE ALL PAGES OF THE AGREEMENT WITH THIS SIGNATURE PAGE

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002320090 fq.gz 11.3 GB
EGAF00002320091 fq.gz 11.1 GB
EGAF00002320092 fq.gz 9.8 GB
EGAF00002320093 fq.gz 9.9 GB
EGAF00002320094 fq.gz 11.0 GB
EGAF00002320095 fq.gz 10.7 GB
EGAF00002320096 fq.gz 10.8 GB
EGAF00002320097 fq.gz 10.3 GB
EGAF00002320098 fq.gz 10.9 GB
EGAF00002320099 fq.gz 10.8 GB
EGAF00002320100 fq.gz 10.9 GB
EGAF00002320101 fq.gz 10.6 GB
EGAF00002320102 fq.gz 12.3 GB
EGAF00002320103 fq.gz 12.2 GB
EGAF00002320104 fq.gz 12.6 GB
EGAF00002320105 fq.gz 12.6 GB
EGAF00002320106 fq.gz 11.4 GB
EGAF00002320107 fq.gz 11.3 GB
EGAF00002320108 fq.gz 12.3 GB
EGAF00002320109 fq.gz 12.3 GB
EGAF00002320110 fq.gz 11.8 GB
EGAF00002320111 fq.gz 11.7 GB
EGAF00002320112 fq.gz 12.0 GB
EGAF00002320113 fq.gz 12.0 GB
EGAF00002320114 fq.gz 9.3 GB
EGAF00002320115 fq.gz 9.4 GB
EGAF00002320116 fq.gz 12.0 GB
EGAF00002320117 fq.gz 12.0 GB
EGAF00002320118 fq.gz 12.2 GB
EGAF00002320119 fq.gz 12.0 GB
EGAF00002320120 fq.gz 12.5 GB
EGAF00002320121 fq.gz 12.5 GB
EGAF00002320122 fq.gz 12.7 GB
EGAF00002320123 fq.gz 12.8 GB
EGAF00002320124 fq.gz 12.2 GB
EGAF00002320125 fq.gz 12.3 GB
EGAF00002320126 fq.gz 12.3 GB
EGAF00002320127 fq.gz 12.4 GB
EGAF00002320128 fq.gz 12.4 GB
EGAF00002320129 fq.gz 12.5 GB
EGAF00002320130 fq.gz 12.4 GB
EGAF00002320131 fq.gz 12.4 GB
EGAF00002320132 fq.gz 12.8 GB
EGAF00002320133 fq.gz 12.9 GB
EGAF00002320134 fq.gz 12.7 GB
EGAF00002320135 fq.gz 12.8 GB
EGAF00002320136 fq.gz 9.6 GB
EGAF00002320137 fq.gz 9.7 GB
EGAF00002320138 fq.gz 12.6 GB
EGAF00002320139 fq.gz 12.6 GB
EGAF00002320140 fq.gz 11.6 GB
EGAF00002320141 fq.gz 11.5 GB
EGAF00002320142 fq.gz 11.4 GB
EGAF00002320143 fq.gz 11.5 GB
EGAF00002320144 fq.gz 7.8 GB
EGAF00002320145 fq.gz 7.7 GB
EGAF00002320146 fq.gz 8.8 GB
EGAF00002320147 fq.gz 8.8 GB
EGAF00002320148 fq.gz 9.3 GB
EGAF00002320149 fq.gz 9.3 GB
EGAF00002320150 fq.gz 9.0 GB
EGAF00002320151 fq.gz 9.0 GB
EGAF00002320152 fq.gz 9.0 GB
EGAF00002320153 fq.gz 9.0 GB
EGAF00002320154 fq.gz 9.0 GB
EGAF00002320155 fq.gz 9.0 GB
EGAF00002320156 fq.gz 9.4 GB
EGAF00002320157 fq.gz 9.4 GB
EGAF00002320158 fq.gz 11.0 GB
EGAF00002320159 fq.gz 11.1 GB
EGAF00002320160 fq.gz 11.7 GB
EGAF00002320161 fq.gz 11.8 GB
EGAF00002320162 fq.gz 12.6 GB
EGAF00002320163 fq.gz 12.8 GB
EGAF00002320164 fq.gz 12.0 GB
EGAF00002320165 fq.gz 12.1 GB
EGAF00002320166 fq.gz 13.1 GB
EGAF00002320167 fq.gz 13.2 GB
EGAF00002320168 fq.gz 12.8 GB
EGAF00002320169 fq.gz 12.9 GB
EGAF00002320170 fq.gz 11.8 GB
EGAF00002320171 fq.gz 12.0 GB
EGAF00002320172 fq.gz 12.1 GB
EGAF00002320173 fq.gz 12.2 GB
EGAF00002320174 fq.gz 12.2 GB
EGAF00002320175 fq.gz 12.4 GB
EGAF00002320176 fq.gz 11.6 GB
EGAF00002320177 fq.gz 11.7 GB
EGAF00002320178 fq.gz 14.5 GB
EGAF00002320179 fq.gz 15.4 GB
EGAF00002320180 fq.gz 11.4 GB
EGAF00002320181 fq.gz 11.6 GB
EGAF00002320182 fq.gz 11.6 GB
EGAF00002320183 fq.gz 11.8 GB
EGAF00002320184 fq.gz 11.7 GB
EGAF00002320185 fq.gz 11.8 GB
EGAF00002320186 fq.gz 11.8 GB
EGAF00002320187 fq.gz 11.9 GB
EGAF00002320188 fq.gz 12.9 GB
EGAF00002320189 fq.gz 13.0 GB
EGAF00002320190 fq.gz 12.9 GB
EGAF00002320191 fq.gz 13.2 GB
EGAF00002320192 fq.gz 13.0 GB
EGAF00002320193 fq.gz 13.2 GB
EGAF00002320194 fq.gz 12.8 GB
EGAF00002320195 fq.gz 13.0 GB
EGAF00002320196 fq.gz 12.5 GB
EGAF00002320197 fq.gz 12.7 GB
EGAF00002320198 fq.gz 11.4 GB
EGAF00002320199 fq.gz 11.6 GB
EGAF00002320200 fq.gz 12.8 GB
EGAF00002320201 fq.gz 12.8 GB
EGAF00002320202 fq.gz 11.7 GB
EGAF00002320203 fq.gz 12.0 GB
EGAF00002320204 fq.gz 12.7 GB
EGAF00002320205 fq.gz 12.9 GB
EGAF00002320206 fq.gz 12.8 GB
EGAF00002320207 fq.gz 12.6 GB
EGAF00002320208 fq.gz 12.7 GB
EGAF00002320209 fq.gz 12.6 GB
EGAF00002320210 fq.gz 12.7 GB
EGAF00002320211 fq.gz 12.6 GB
EGAF00002320212 fq.gz 12.8 GB
EGAF00002320213 fq.gz 12.7 GB
EGAF00002320214 fq.gz 12.5 GB
EGAF00002320215 fq.gz 12.5 GB
EGAF00002320216 fq.gz 12.7 GB
EGAF00002320217 fq.gz 12.6 GB
EGAF00002320218 fq.gz 13.0 GB
EGAF00002320219 fq.gz 13.0 GB
EGAF00002320220 fq.gz 17.0 GB
EGAF00002320221 fq.gz 16.9 GB
EGAF00002320222 fq.gz 17.3 GB
EGAF00002320223 fq.gz 17.2 GB
EGAF00002320224 fq.gz 17.3 GB
EGAF00002320225 fq.gz 17.2 GB
EGAF00002320226 fq.gz 17.2 GB
EGAF00002320227 fq.gz 17.1 GB
EGAF00002320228 fq.gz 17.2 GB
EGAF00002320229 fq.gz 17.2 GB
EGAF00002320230 fq.gz 17.6 GB
EGAF00002320231 fq.gz 17.6 GB
EGAF00002320232 fq.gz 16.6 GB
EGAF00002320233 fq.gz 16.7 GB
EGAF00002320234 fq.gz 16.3 GB
EGAF00002320235 fq.gz 16.4 GB
EGAF00002320236 fq.gz 16.2 GB
EGAF00002320237 fq.gz 16.2 GB
EGAF00002320238 fq.gz 16.5 GB
EGAF00002320239 fq.gz 16.6 GB
EGAF00002320240 fq.gz 16.6 GB
EGAF00002320241 fq.gz 16.7 GB
EGAF00002320242 fq.gz 16.4 GB
EGAF00002320243 fq.gz 16.5 GB
EGAF00002320244 fq.gz 18.0 GB
EGAF00002320245 fq.gz 18.1 GB
EGAF00002320246 fq.gz 17.9 GB
EGAF00002320247 fq.gz 18.0 GB
EGAF00002320248 fq.gz 17.4 GB
EGAF00002320249 fq.gz 17.6 GB
EGAF00002320250 fq.gz 17.7 GB
EGAF00002320251 fq.gz 17.8 GB
EGAF00002320252 fq.gz 17.6 GB
EGAF00002320253 fq.gz 17.8 GB
EGAF00002320254 fq.gz 17.8 GB
EGAF00002320255 fq.gz 18.0 GB
EGAF00002320256 fq.gz 14.1 GB
EGAF00002320257 fq.gz 14.5 GB
EGAF00002320258 fq.gz 13.7 GB
EGAF00002320259 fq.gz 14.1 GB
EGAF00002320260 fq.gz 14.5 GB
EGAF00002320261 fq.gz 14.9 GB
EGAF00002320262 fq.gz 13.6 GB
EGAF00002320263 fq.gz 13.9 GB
EGAF00002320264 fq.gz 14.5 GB
EGAF00002320265 fq.gz 14.9 GB
EGAF00002320266 fq.gz 13.7 GB
EGAF00002320267 fq.gz 14.1 GB
EGAF00002320268 fq.gz 13.9 GB
EGAF00002320269 fq.gz 14.3 GB
EGAF00002320270 fq.gz 16.7 GB
EGAF00002320271 fq.gz 17.9 GB
EGAF00002320272 fq.gz 16.9 GB
EGAF00002320273 fq.gz 17.9 GB
EGAF00002320274 fq.gz 16.6 GB
EGAF00002320275 fq.gz 17.5 GB
EGAF00002320276 fq.gz 13.6 GB
EGAF00002320277 fq.gz 14.1 GB
EGAF00002320278 fq.gz 16.9 GB
EGAF00002320279 fq.gz 17.9 GB
EGAF00002320280 fq.gz 16.9 GB
EGAF00002320281 fq.gz 17.8 GB
EGAF00002320282 fq.gz 16.8 GB
EGAF00002320283 fq.gz 17.7 GB
EGAF00002320284 fq.gz 16.9 GB
EGAF00002320285 fq.gz 17.9 GB
EGAF00002320286 fq.gz 16.9 GB
EGAF00002320287 fq.gz 18.0 GB
EGAF00002320288 fq.gz 13.7 GB
EGAF00002320289 fq.gz 14.0 GB
EGAF00002320290 fq.gz 13.8 GB
EGAF00002320291 fq.gz 14.2 GB
EGAF00002320292 fq.gz 14.2 GB
EGAF00002320293 fq.gz 14.6 GB
EGAF00002320294 fq.gz 13.8 GB
EGAF00002320295 fq.gz 14.2 GB
EGAF00002320296 fq.gz 13.9 GB
EGAF00002320297 fq.gz 14.3 GB
EGAF00002320298 fq.gz 14.0 GB
EGAF00002320299 fq.gz 14.4 GB
EGAF00002320300 fq.gz 14.1 GB
EGAF00002320301 fq.gz 14.4 GB
EGAF00002320302 fq.gz 14.2 GB
EGAF00002320303 fq.gz 14.6 GB
EGAF00002320304 fq.gz 8.5 GB
EGAF00002320305 fq.gz 8.6 GB
EGAF00002320306 fq.gz 8.7 GB
EGAF00002320307 fq.gz 8.8 GB
EGAF00002320308 fq.gz 8.6 GB
EGAF00002320309 fq.gz 8.7 GB
EGAF00002320310 fq.gz 8.8 GB
EGAF00002320311 fq.gz 8.8 GB
EGAF00002320312 fq.gz 9.0 GB
EGAF00002320313 fq.gz 9.1 GB
EGAF00002320314 fq.gz 9.2 GB
EGAF00002320315 fq.gz 9.3 GB
EGAF00002320316 fq.gz 9.1 GB
EGAF00002320317 fq.gz 9.2 GB
EGAF00002320318 fq.gz 9.0 GB
EGAF00002320319 fq.gz 9.1 GB
EGAF00002320320 fq.gz 8.3 GB
EGAF00002320321 fq.gz 8.4 GB
EGAF00002320322 fq.gz 8.5 GB
EGAF00002320323 fq.gz 8.6 GB
EGAF00002320324 fq.gz 7.6 GB
EGAF00002320325 fq.gz 7.7 GB
EGAF00002320326 fq.gz 7.6 GB
EGAF00002320327 fq.gz 7.6 GB
EGAF00002320328 fq.gz 8.0 GB
EGAF00002320329 fq.gz 8.0 GB
EGAF00002320330 fq.gz 7.7 GB
EGAF00002320331 fq.gz 7.7 GB
EGAF00002320332 fq.gz 7.8 GB
EGAF00002320333 fq.gz 7.8 GB
EGAF00002320334 fq.gz 7.5 GB
EGAF00002320335 fq.gz 7.6 GB
EGAF00002320336 fq.gz 9.5 GB
EGAF00002320337 fq.gz 9.7 GB
EGAF00002320338 fq.gz 9.4 GB
EGAF00002320339 fq.gz 9.4 GB
EGAF00002320340 fq.gz 9.0 GB
EGAF00002320341 fq.gz 9.1 GB
EGAF00002320342 fq.gz 9.1 GB
EGAF00002320343 fq.gz 9.1 GB
EGAF00002320344 fq.gz 9.0 GB
EGAF00002320345 fq.gz 9.1 GB
EGAF00002320346 fq.gz 8.8 GB
EGAF00002320347 fq.gz 8.9 GB
EGAF00002320348 fq.gz 8.8 GB
EGAF00002320349 fq.gz 8.8 GB
EGAF00002320350 fq.gz 8.9 GB
EGAF00002320351 fq.gz 8.9 GB
EGAF00002320352 fq.gz 8.6 GB
EGAF00002320353 fq.gz 8.7 GB
EGAF00002320354 fq.gz 8.9 GB
EGAF00002320355 fq.gz 9.0 GB
EGAF00002320356 fq.gz 8.6 GB
EGAF00002320357 fq.gz 8.7 GB
EGAF00002320358 fq.gz 8.7 GB
EGAF00002320359 fq.gz 8.8 GB
EGAF00002320360 fq.gz 8.5 GB
EGAF00002320361 fq.gz 8.6 GB
EGAF00002320362 fq.gz 8.7 GB
EGAF00002320363 fq.gz 8.7 GB
EGAF00002320364 fq.gz 8.8 GB
EGAF00002320365 fq.gz 8.9 GB
EGAF00002320366 fq.gz 8.9 GB
EGAF00002320367 fq.gz 9.0 GB
EGAF00002320368 fq.gz 7.8 GB
EGAF00002320369 fq.gz 7.8 GB
EGAF00002320370 fq.gz 7.8 GB
EGAF00002320371 fq.gz 7.8 GB
EGAF00002320372 fq.gz 5.9 GB
EGAF00002320373 fq.gz 6.0 GB
EGAF00002320374 fq.gz 5.9 GB
EGAF00002320375 fq.gz 6.0 GB
EGAF00002320376 fq.gz 7.9 GB
EGAF00002320377 fq.gz 7.9 GB
EGAF00002320378 fq.gz 8.5 GB
EGAF00002320379 fq.gz 8.5 GB
EGAF00002320380 fq.gz 5.8 GB
EGAF00002320381 fq.gz 5.8 GB
EGAF00002320382 fq.gz 8.4 GB
EGAF00002320383 fq.gz 8.4 GB
EGAF00002320384 fq.gz 8.6 GB
EGAF00002320385 fq.gz 8.5 GB
EGAF00002320386 fq.gz 8.6 GB
EGAF00002320387 fq.gz 8.5 GB
EGAF00002320388 fq.gz 8.3 GB
EGAF00002320389 fq.gz 8.3 GB
EGAF00002320390 fq.gz 14.8 GB
EGAF00002320391 fq.gz 14.8 GB
EGAF00002320392 fq.gz 15.3 GB
EGAF00002320393 fq.gz 15.3 GB
EGAF00002320394 fq.gz 14.9 GB
EGAF00002320395 fq.gz 14.9 GB
EGAF00002320396 fq.gz 15.4 GB
EGAF00002320397 fq.gz 15.4 GB
EGAF00002320398 fq.gz 14.9 GB
EGAF00002320399 fq.gz 14.9 GB
EGAF00002320400 fq.gz 15.2 GB
EGAF00002320401 fq.gz 15.1 GB
EGAF00002320402 fq.gz 15.1 GB
EGAF00002320403 fq.gz 15.1 GB
EGAF00002320404 fq.gz 15.2 GB
EGAF00002320405 fq.gz 15.2 GB
EGAF00002320406 fq.gz 11.0 GB
EGAF00002320407 fq.gz 11.3 GB
EGAF00002320408 fq.gz 21.0 GB
EGAF00002320409 fq.gz 21.8 GB
EGAF00002320410 fq.gz 11.9 GB
EGAF00002320411 fq.gz 12.1 GB
EGAF00002320412 fq.gz 13.0 GB
EGAF00002320413 fq.gz 13.2 GB
EGAF00002320414 fq.gz 11.8 GB
EGAF00002320415 fq.gz 12.0 GB
EGAF00002320416 fq.gz 11.9 GB
EGAF00002320417 fq.gz 12.1 GB
EGAF00002320418 fq.gz 11.7 GB
EGAF00002320419 fq.gz 11.9 GB
EGAF00002320420 fq.gz 11.9 GB
EGAF00002320421 fq.gz 12.1 GB
EGAF00002320422 fq.gz 12.7 GB
EGAF00002320423 fq.gz 12.9 GB
EGAF00002320424 fq.gz 10.2 GB
EGAF00002320425 fq.gz 10.3 GB
EGAF00002320426 fq.gz 11.1 GB
EGAF00002320427 fq.gz 11.0 GB
338 Files (4.1 TB)