WGS profiling of pediatric osteosarcoma
Primary pediatric osteosarcoma samples were collected and profiled using WGS. When possible, germline and tumor samples were collected. For some patients, multiple tumor tissues were collected and sequenced. Some of the samples were used to derive PDTX models, which were also profiled with WGS. Paired end sequencing was performed on Illumina HiSeq instruments and FASTQ files reported.
- 75 samples
- DAC: EGAC00001001014
- Technology: unspecified
Research focused data access
All data access requests should be submitted to Dr. Alejandro Sweet-Cordero at UCSF. All requests will be reviewed by the access committee.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001003201 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00002300983 | fastq.gz | 17.2 GB | ||
| EGAF00002300984 | fastq.gz | 17.9 GB | ||
| EGAF00002300985 | fastq.gz | 17.1 GB | ||
| EGAF00002300986 | fastq.gz | 17.9 GB | ||
| EGAF00002300987 | fastq.gz | 17.0 GB | ||
| EGAF00002300988 | fastq.gz | 17.8 GB | ||
| EGAF00002300989 | fastq.gz | 17.0 GB | ||
| EGAF00002300990 | fastq.gz | 17.4 GB | ||
| EGAF00002300991 | fastq.gz | 16.6 GB | ||
| EGAF00002300992 | fastq.gz | 17.1 GB | ||
| EGAF00002300993 | fastq.gz | 17.3 GB | ||
| EGAF00002300994 | fastq.gz | 17.6 GB | ||
| EGAF00002300995 | fastq.gz | 31.0 GB | ||
| EGAF00002300996 | fastq.gz | 36.9 GB | ||
| EGAF00002300997 | fastq.gz | 64.6 GB | ||
| EGAF00002300998 | fastq.gz | 76.3 GB | ||
| EGAF00002300999 | fastq.gz | 28.9 GB | ||
| EGAF00002301000 | fastq.gz | 34.4 GB | ||
| EGAF00002301001 | fastq.gz | 61.9 GB | ||
| EGAF00002301002 | fastq.gz | 71.7 GB | ||
| EGAF00002301003 | fastq.gz | 32.4 GB | ||
| EGAF00002301004 | fastq.gz | 36.5 GB | ||
| EGAF00002301005 | fastq.gz | 29.5 GB | ||
| EGAF00002301006 | fastq.gz | 35.5 GB | ||
| EGAF00002301007 | fastq.gz | 36.0 GB | ||
| EGAF00002301008 | fastq.gz | 38.9 GB | ||
| EGAF00002301009 | fastq.gz | 35.9 GB | ||
| EGAF00002301010 | fastq.gz | 42.4 GB | ||
| EGAF00002301011 | fastq.gz | 68.2 GB | ||
| EGAF00002301012 | fastq.gz | 81.9 GB | ||
| EGAF00002301013 | fastq.gz | 33.9 GB | ||
| EGAF00002301014 | fastq.gz | 38.5 GB | ||
| EGAF00002301015 | fastq.gz | 40.5 GB | ||
| EGAF00002301016 | fastq.gz | 43.6 GB | ||
| EGAF00002301017 | fastq.gz | 39.5 GB | ||
| EGAF00002301018 | fastq.gz | 42.7 GB | ||
| EGAF00002301019 | fastq.gz | 63.6 GB | ||
| EGAF00002301020 | fastq.gz | 77.2 GB | ||
| EGAF00002301021 | fastq.gz | 36.8 GB | ||
| EGAF00002301022 | fastq.gz | 42.3 GB | ||
| EGAF00002301023 | fastq.gz | 16.0 GB | ||
| EGAF00002301024 | fastq.gz | 16.6 GB | ||
| EGAF00002301025 | fastq.gz | 16.2 GB | ||
| EGAF00002301026 | fastq.gz | 16.8 GB | ||
| EGAF00002301027 | fastq.gz | 16.2 GB | ||
| EGAF00002301028 | fastq.gz | 16.8 GB | ||
| EGAF00002301029 | fastq.gz | 16.5 GB | ||
| EGAF00002301030 | fastq.gz | 16.8 GB | ||
| EGAF00002301031 | fastq.gz | 16.6 GB | ||
| EGAF00002301032 | fastq.gz | 16.9 GB | ||
| EGAF00002301033 | fastq.gz | 40.3 GB | ||
| EGAF00002301034 | fastq.gz | 43.4 GB | ||
| EGAF00002301035 | fastq.gz | 32.9 GB | ||
| EGAF00002301036 | fastq.gz | 36.0 GB | ||
| EGAF00002301037 | fastq.gz | 60.9 GB | ||
| EGAF00002301038 | fastq.gz | 70.3 GB | ||
| EGAF00002301039 | fastq.gz | 33.4 GB | ||
| EGAF00002301040 | fastq.gz | 38.7 GB | ||
| EGAF00002301041 | fastq.gz | 39.1 GB | ||
| EGAF00002301042 | fastq.gz | 41.3 GB | ||
| EGAF00002301043 | fastq.gz | 67.8 GB | ||
| EGAF00002301044 | fastq.gz | 76.7 GB | ||
| EGAF00002301045 | fastq.gz | 27.0 GB | ||
| EGAF00002301046 | fastq.gz | 30.6 GB | ||
| EGAF00002301047 | fastq.gz | 40.4 GB | ||
| EGAF00002301048 | fastq.gz | 43.2 GB | ||
| EGAF00002301049 | fastq.gz | 36.4 GB | ||
| EGAF00002301050 | fastq.gz | 40.0 GB | ||
| EGAF00002301051 | fastq.gz | 39.8 GB | ||
| EGAF00002301052 | fastq.gz | 42.9 GB | ||
| EGAF00002301053 | fastq.gz | 58.0 GB | ||
| EGAF00002301054 | fastq.gz | 72.1 GB | ||
| EGAF00002301055 | fastq.gz | 38.3 GB | ||
| EGAF00002301056 | fastq.gz | 45.7 GB | ||
| EGAF00002301057 | fastq.gz | 29.3 GB | ||
| EGAF00002301058 | fastq.gz | 34.3 GB | ||
| EGAF00002301059 | fastq.gz | 40.0 GB | ||
| EGAF00002301060 | fastq.gz | 43.2 GB | ||
| EGAF00002301061 | fastq.gz | 37.2 GB | ||
| EGAF00002301062 | fastq.gz | 42.8 GB | ||
| EGAF00002301063 | fastq.gz | 37.0 GB | ||
| EGAF00002301064 | fastq.gz | 42.4 GB | ||
| EGAF00002301065 | fastq.gz | 34.9 GB | ||
| EGAF00002301066 | fastq.gz | 39.6 GB | ||
| EGAF00002301067 | fastq.gz | 36.4 GB | ||
| EGAF00002301068 | fastq.gz | 40.9 GB | ||
| EGAF00002301069 | fastq.gz | 37.6 GB | ||
| EGAF00002301070 | fastq.gz | 42.2 GB | ||
| EGAF00002301071 | fastq.gz | 27.1 GB | ||
| EGAF00002301072 | fastq.gz | 30.6 GB | ||
| EGAF00002301073 | fastq.gz | 26.0 GB | ||
| EGAF00002301074 | fastq.gz | 29.6 GB | ||
| EGAF00002301075 | fastq.gz | 38.0 GB | ||
| EGAF00002301076 | fastq.gz | 41.5 GB | ||
| EGAF00002301077 | fastq.gz | 33.8 GB | ||
| EGAF00002301078 | fastq.gz | 39.2 GB | ||
| EGAF00002301079 | fastq.gz | 66.9 GB | ||
| EGAF00002301080 | fastq.gz | 78.7 GB | ||
| EGAF00002301081 | fastq.gz | 39.5 GB | ||
| EGAF00002301082 | fastq.gz | 44.3 GB | ||
| EGAF00002301083 | fastq.gz | 66.1 GB | ||
| EGAF00002301084 | fastq.gz | 74.6 GB | ||
| EGAF00002301085 | fastq.gz | 39.0 GB | ||
| EGAF00002301086 | fastq.gz | 43.7 GB | ||
| EGAF00002301087 | fastq.gz | 32.9 GB | ||
| EGAF00002301088 | fastq.gz | 40.2 GB | ||
| EGAF00002301089 | fastq.gz | 63.0 GB | ||
| EGAF00002301090 | fastq.gz | 77.6 GB | ||
| EGAF00002301091 | fastq.gz | 29.9 GB | ||
| EGAF00002301092 | fastq.gz | 35.6 GB | ||
| EGAF00002301093 | fastq.gz | 59.6 GB | ||
| EGAF00002301094 | fastq.gz | 70.7 GB | ||
| EGAF00002301095 | fastq.gz | 31.7 GB | ||
| EGAF00002301096 | fastq.gz | 40.4 GB | ||
| EGAF00002301097 | fastq.gz | 33.3 GB | ||
| EGAF00002301098 | fastq.gz | 39.1 GB | ||
| EGAF00002301099 | fastq.gz | 66.9 GB | ||
| EGAF00002301100 | fastq.gz | 79.3 GB | ||
| EGAF00002301101 | fastq.gz | 32.2 GB | ||
| EGAF00002301102 | fastq.gz | 38.8 GB | ||
| EGAF00002301103 | fastq.gz | 57.2 GB | ||
| EGAF00002301104 | fastq.gz | 65.4 GB | ||
| EGAF00002301105 | fastq.gz | 58.6 GB | ||
| EGAF00002301106 | fastq.gz | 65.1 GB | ||
| EGAF00002301107 | fastq.gz | 29.5 GB | ||
| EGAF00002301108 | fastq.gz | 35.9 GB | ||
| EGAF00002301109 | fastq.gz | 30.0 GB | ||
| EGAF00002301110 | fastq.gz | 37.8 GB | ||
| EGAF00002301111 | fastq.gz | 35.7 GB | ||
| EGAF00002301112 | fastq.gz | 40.7 GB | ||
| EGAF00002301113 | fastq.gz | 57.1 GB | ||
| EGAF00002301114 | fastq.gz | 71.0 GB | ||
| EGAF00002301115 | fastq.gz | 27.2 GB | ||
| EGAF00002301116 | fastq.gz | 32.1 GB | ||
| EGAF00002301117 | fastq.gz | 60.4 GB | ||
| EGAF00002301118 | fastq.gz | 74.7 GB | ||
| EGAF00002301119 | fastq.gz | 65.2 GB | ||
| EGAF00002301120 | fastq.gz | 70.6 GB | ||
| EGAF00002301121 | fastq.gz | 31.2 GB | ||
| EGAF00002301122 | fastq.gz | 35.4 GB | ||
| EGAF00002301123 | fastq.gz | 31.4 GB | ||
| EGAF00002301124 | fastq.gz | 37.3 GB | ||
| EGAF00002301125 | fastq.gz | 71.0 GB | ||
| EGAF00002301126 | fastq.gz | 83.8 GB | ||
| EGAF00002301127 | fastq.gz | 29.0 GB | ||
| EGAF00002301128 | fastq.gz | 34.0 GB | ||
| EGAF00002301129 | fastq.gz | 32.3 GB | ||
| EGAF00002301130 | fastq.gz | 37.7 GB | ||
| EGAF00002301131 | fastq.gz | 40.7 GB | ||
| EGAF00002301132 | fastq.gz | 45.6 GB | ||
| EGAF00002301133 | fastq.gz | 86.5 GB | ||
| EGAF00002301134 | fastq.gz | 96.9 GB | ||
| EGAF00002301135 | fastq.gz | 71.0 GB | ||
| EGAF00002301136 | fastq.gz | 79.7 GB | ||
| EGAF00002301137 | fastq.gz | 43.3 GB | ||
| EGAF00002301138 | fastq.gz | 52.8 GB | ||
| EGAF00002301139 | fastq.gz | 33.1 GB | ||
| EGAF00002301140 | fastq.gz | 37.2 GB | ||
| EGAF00002301141 | fastq.gz | 93.2 GB | ||
| EGAF00002301142 | fastq.gz | 105.4 GB | ||
| EGAF00002301143 | fastq.gz | 64.2 GB | ||
| EGAF00002301144 | fastq.gz | 72.7 GB | ||
| EGAF00002301145 | fastq.gz | 73.4 GB | ||
| EGAF00002301146 | fastq.gz | 82.9 GB | ||
| EGAF00002301147 | fastq.gz | 27.5 GB | ||
| EGAF00002301148 | fastq.gz | 30.9 GB | ||
| EGAF00002301149 | fastq.gz | 63.8 GB | ||
| EGAF00002301150 | fastq.gz | 70.0 GB | ||
| EGAF00002301151 | fastq.gz | 70.8 GB | ||
| EGAF00002301152 | fastq.gz | 77.9 GB | ||
| 170 Files (7.6 TB) | ||||