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WGS profiling of pediatric osteosarcoma

Primary pediatric osteosarcoma samples were collected and profiled using WGS. When possible, germline and tumor samples were collected. For some patients, multiple tumor tissues were collected and sequenced. Some of the samples were used to derive PDTX models, which were also profiled with WGS. Paired end sequencing was performed on Illumina HiSeq instruments and FASTQ files reported.

Request Access

Research focused data access

All data access requests should be submitted to Dr. Alejandro Sweet-Cordero at UCSF. All requests will be reviewed by the access committee.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002300983 fastq.gz 17.2 GB
EGAF00002300984 fastq.gz 17.9 GB
EGAF00002300985 fastq.gz 17.1 GB
EGAF00002300986 fastq.gz 17.9 GB
EGAF00002300987 fastq.gz 17.0 GB
EGAF00002300988 fastq.gz 17.8 GB
EGAF00002300989 fastq.gz 17.0 GB
EGAF00002300990 fastq.gz 17.4 GB
EGAF00002300991 fastq.gz 16.6 GB
EGAF00002300992 fastq.gz 17.1 GB
EGAF00002300993 fastq.gz 17.3 GB
EGAF00002300994 fastq.gz 17.6 GB
EGAF00002300995 fastq.gz 31.0 GB
EGAF00002300996 fastq.gz 36.9 GB
EGAF00002300997 fastq.gz 64.6 GB
EGAF00002300998 fastq.gz 76.3 GB
EGAF00002300999 fastq.gz 28.9 GB
EGAF00002301000 fastq.gz 34.4 GB
EGAF00002301001 fastq.gz 61.9 GB
EGAF00002301002 fastq.gz 71.7 GB
EGAF00002301003 fastq.gz 32.4 GB
EGAF00002301004 fastq.gz 36.5 GB
EGAF00002301005 fastq.gz 29.5 GB
EGAF00002301006 fastq.gz 35.5 GB
EGAF00002301007 fastq.gz 36.0 GB
EGAF00002301008 fastq.gz 38.9 GB
EGAF00002301009 fastq.gz 35.9 GB
EGAF00002301010 fastq.gz 42.4 GB
EGAF00002301011 fastq.gz 68.2 GB
EGAF00002301012 fastq.gz 81.9 GB
EGAF00002301013 fastq.gz 33.9 GB
EGAF00002301014 fastq.gz 38.5 GB
EGAF00002301015 fastq.gz 40.5 GB
EGAF00002301016 fastq.gz 43.6 GB
EGAF00002301017 fastq.gz 39.5 GB
EGAF00002301018 fastq.gz 42.7 GB
EGAF00002301019 fastq.gz 63.6 GB
EGAF00002301020 fastq.gz 77.2 GB
EGAF00002301021 fastq.gz 36.8 GB
EGAF00002301022 fastq.gz 42.3 GB
EGAF00002301023 fastq.gz 16.0 GB
EGAF00002301024 fastq.gz 16.6 GB
EGAF00002301025 fastq.gz 16.2 GB
EGAF00002301026 fastq.gz 16.8 GB
EGAF00002301027 fastq.gz 16.2 GB
EGAF00002301028 fastq.gz 16.8 GB
EGAF00002301029 fastq.gz 16.5 GB
EGAF00002301030 fastq.gz 16.8 GB
EGAF00002301031 fastq.gz 16.6 GB
EGAF00002301032 fastq.gz 16.9 GB
EGAF00002301033 fastq.gz 40.3 GB
EGAF00002301034 fastq.gz 43.4 GB
EGAF00002301035 fastq.gz 32.9 GB
EGAF00002301036 fastq.gz 36.0 GB
EGAF00002301037 fastq.gz 60.9 GB
EGAF00002301038 fastq.gz 70.3 GB
EGAF00002301039 fastq.gz 33.4 GB
EGAF00002301040 fastq.gz 38.7 GB
EGAF00002301041 fastq.gz 39.1 GB
EGAF00002301042 fastq.gz 41.3 GB
EGAF00002301043 fastq.gz 67.8 GB
EGAF00002301044 fastq.gz 76.7 GB
EGAF00002301045 fastq.gz 27.0 GB
EGAF00002301046 fastq.gz 30.6 GB
EGAF00002301047 fastq.gz 40.4 GB
EGAF00002301048 fastq.gz 43.2 GB
EGAF00002301049 fastq.gz 36.4 GB
EGAF00002301050 fastq.gz 40.0 GB
EGAF00002301051 fastq.gz 39.8 GB
EGAF00002301052 fastq.gz 42.9 GB
EGAF00002301053 fastq.gz 58.0 GB
EGAF00002301054 fastq.gz 72.1 GB
EGAF00002301055 fastq.gz 38.3 GB
EGAF00002301056 fastq.gz 45.7 GB
EGAF00002301057 fastq.gz 29.3 GB
EGAF00002301058 fastq.gz 34.3 GB
EGAF00002301059 fastq.gz 40.0 GB
EGAF00002301060 fastq.gz 43.2 GB
EGAF00002301061 fastq.gz 37.2 GB
EGAF00002301062 fastq.gz 42.8 GB
EGAF00002301063 fastq.gz 37.0 GB
EGAF00002301064 fastq.gz 42.4 GB
EGAF00002301065 fastq.gz 34.9 GB
EGAF00002301066 fastq.gz 39.6 GB
EGAF00002301067 fastq.gz 36.4 GB
EGAF00002301068 fastq.gz 40.9 GB
EGAF00002301069 fastq.gz 37.6 GB
EGAF00002301070 fastq.gz 42.2 GB
EGAF00002301071 fastq.gz 27.1 GB
EGAF00002301072 fastq.gz 30.6 GB
EGAF00002301073 fastq.gz 26.0 GB
EGAF00002301074 fastq.gz 29.6 GB
EGAF00002301075 fastq.gz 38.0 GB
EGAF00002301076 fastq.gz 41.5 GB
EGAF00002301077 fastq.gz 33.8 GB
EGAF00002301078 fastq.gz 39.2 GB
EGAF00002301079 fastq.gz 66.9 GB
EGAF00002301080 fastq.gz 78.7 GB
EGAF00002301081 fastq.gz 39.5 GB
EGAF00002301082 fastq.gz 44.3 GB
EGAF00002301083 fastq.gz 66.1 GB
EGAF00002301084 fastq.gz 74.6 GB
EGAF00002301085 fastq.gz 39.0 GB
EGAF00002301086 fastq.gz 43.7 GB
EGAF00002301087 fastq.gz 32.9 GB
EGAF00002301088 fastq.gz 40.2 GB
EGAF00002301089 fastq.gz 63.0 GB
EGAF00002301090 fastq.gz 77.6 GB
EGAF00002301091 fastq.gz 29.9 GB
EGAF00002301092 fastq.gz 35.6 GB
EGAF00002301093 fastq.gz 59.6 GB
EGAF00002301094 fastq.gz 70.7 GB
EGAF00002301095 fastq.gz 31.7 GB
EGAF00002301096 fastq.gz 40.4 GB
EGAF00002301097 fastq.gz 33.3 GB
EGAF00002301098 fastq.gz 39.1 GB
EGAF00002301099 fastq.gz 66.9 GB
EGAF00002301100 fastq.gz 79.3 GB
EGAF00002301101 fastq.gz 32.2 GB
EGAF00002301102 fastq.gz 38.8 GB
EGAF00002301103 fastq.gz 57.2 GB
EGAF00002301104 fastq.gz 65.4 GB
EGAF00002301105 fastq.gz 58.6 GB
EGAF00002301106 fastq.gz 65.1 GB
EGAF00002301107 fastq.gz 29.5 GB
EGAF00002301108 fastq.gz 35.9 GB
EGAF00002301109 fastq.gz 30.0 GB
EGAF00002301110 fastq.gz 37.8 GB
EGAF00002301111 fastq.gz 35.7 GB
EGAF00002301112 fastq.gz 40.7 GB
EGAF00002301113 fastq.gz 57.1 GB
EGAF00002301114 fastq.gz 71.0 GB
EGAF00002301115 fastq.gz 27.2 GB
EGAF00002301116 fastq.gz 32.1 GB
EGAF00002301117 fastq.gz 60.4 GB
EGAF00002301118 fastq.gz 74.7 GB
EGAF00002301119 fastq.gz 65.2 GB
EGAF00002301120 fastq.gz 70.6 GB
EGAF00002301121 fastq.gz 31.2 GB
EGAF00002301122 fastq.gz 35.4 GB
EGAF00002301123 fastq.gz 31.4 GB
EGAF00002301124 fastq.gz 37.3 GB
EGAF00002301125 fastq.gz 71.0 GB
EGAF00002301126 fastq.gz 83.8 GB
EGAF00002301127 fastq.gz 29.0 GB
EGAF00002301128 fastq.gz 34.0 GB
EGAF00002301129 fastq.gz 32.3 GB
EGAF00002301130 fastq.gz 37.7 GB
EGAF00002301131 fastq.gz 40.7 GB
EGAF00002301132 fastq.gz 45.6 GB
EGAF00002301133 fastq.gz 86.5 GB
EGAF00002301134 fastq.gz 96.9 GB
EGAF00002301135 fastq.gz 71.0 GB
EGAF00002301136 fastq.gz 79.7 GB
EGAF00002301137 fastq.gz 43.3 GB
EGAF00002301138 fastq.gz 52.8 GB
EGAF00002301139 fastq.gz 33.1 GB
EGAF00002301140 fastq.gz 37.2 GB
EGAF00002301141 fastq.gz 93.2 GB
EGAF00002301142 fastq.gz 105.4 GB
EGAF00002301143 fastq.gz 64.2 GB
EGAF00002301144 fastq.gz 72.7 GB
EGAF00002301145 fastq.gz 73.4 GB
EGAF00002301146 fastq.gz 82.9 GB
EGAF00002301147 fastq.gz 27.5 GB
EGAF00002301148 fastq.gz 30.9 GB
EGAF00002301149 fastq.gz 63.8 GB
EGAF00002301150 fastq.gz 70.0 GB
EGAF00002301151 fastq.gz 70.8 GB
EGAF00002301152 fastq.gz 77.9 GB
170 Files (7.6 TB)