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Whole genome sequencing of metastatic cutaneous squamous cell carcinoma

This dataset includes somatic small variant calling files derived from fifteen metastatic samples from cutaneous squamous cell carcinoma matched to normal blood samples. These samples were whole-genome sequenced by HiSeq X Ten and the resulting reads were mapped against the human genome (hg37) using BWA-MEM 0.7.10-r789. Somatic variant calling was then performed using strelka 1 (version 2.0.17).

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Policy for HNSCI DAC

Any user requesting access to these controlled datasets must apply for authorization, which is granted by a Data Access Committee (DAC). DACs review and approve or disapprove all requests from the research community for data access. Any user accessing data from this repository should not attempt to identify individual human research participants from whom the data were obtained. They should also acknowledge in all oral or written presentations, disclosures, or publications the specific dataset(s) or applicable accession number(s) through which the investigator accessed any data.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002278720 vcf 323.1 MB
EGAF00002278721 vcf 135.9 MB
EGAF00002278722 vcf 62.8 MB
EGAF00002278723 vcf 337.6 MB
EGAF00002278724 vcf 128.6 MB
EGAF00002278725 vcf 96.4 MB
EGAF00002278726 vcf 107.7 MB
EGAF00002278727 vcf 154.7 MB
EGAF00002278728 vcf 73.4 MB
EGAF00002278729 vcf 127.1 MB
EGAF00002278730 vcf 41.8 MB
EGAF00002278731 vcf 129.3 MB
EGAF00002278732 vcf 191.4 MB
13 Files (1.9 GB)