Circulating tumour DNA abundance and potential utility in de novo metastatic prostate cancer
We set out to determine ctDNA abundance at de novo mCSPC diagnosis and whether ctDNA provides complementary clinically relevant information to a prostate biopsy. We collected and sequenced 77 plasma cell-free DNA samples from 53 newly diagnosed patients with mCSPC. Targeted sequencing was also performed on DNA from 48 diagnostic prostate tissue samples.
- 178 samples
- DAC: EGAC00001001099
- Technology: Illumina HiSeq 2500
Data Access Policy for the DNA sequencing data included in the study "Circulating tumour DNA abundance and potential utility in de novo metastatic prostate cancer"
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
Study ID | Study Title | Study Type |
---|---|---|
Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
ID | File Type | Size | Located in | |
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EGAF00002287056 | fq.gz | 670.8 MB | ||
EGAF00002287057 | fq.gz | 685.7 MB | ||
EGAF00002287058 | fq.gz | 141.0 MB | ||
EGAF00002287059 | fq.gz | 156.1 MB | ||
EGAF00002287060 | fq.gz | 261.2 MB | ||
EGAF00002287061 | fq.gz | 264.4 MB | ||
EGAF00002287062 | fq.gz | 553.8 MB | ||
EGAF00002287063 | fq.gz | 568.4 MB | ||
EGAF00002287064 | fq.gz | 149.5 MB | ||
EGAF00002287065 | fq.gz | 161.4 MB | ||
EGAF00002287066 | fq.gz | 292.1 MB | ||
EGAF00002287067 | fq.gz | 295.7 MB | ||
EGAF00002287068 | fq.gz | 745.8 MB | ||
EGAF00002287069 | fq.gz | 761.7 MB | ||
EGAF00002287070 | fq.gz | 95.5 MB | ||
EGAF00002287071 | fq.gz | 105.5 MB | ||
EGAF00002287072 | fq.gz | 259.8 MB | ||
EGAF00002287073 | fq.gz | 263.2 MB | ||
EGAF00002287074 | fq.gz | 767.5 MB | ||
EGAF00002287075 | fq.gz | 778.8 MB | ||
EGAF00002287076 | fq.gz | 441.6 MB | ||
EGAF00002287077 | fq.gz | 451.7 MB | ||
EGAF00002287078 | fq.gz | 493.8 MB | ||
EGAF00002287079 | fq.gz | 504.3 MB | ||
EGAF00002287080 | fq.gz | 174.2 MB | ||
EGAF00002287081 | fq.gz | 189.7 MB | ||
EGAF00002287082 | fq.gz | 258.3 MB | ||
EGAF00002287083 | fq.gz | 268.6 MB | ||
EGAF00002287084 | fq.gz | 490.4 MB | ||
EGAF00002287085 | fq.gz | 500.3 MB | ||
EGAF00002287086 | fq.gz | 189.3 MB | ||
EGAF00002287087 | fq.gz | 211.2 MB | ||
EGAF00002287088 | fq.gz | 381.7 MB | ||
EGAF00002287089 | fq.gz | 390.6 MB | ||
EGAF00002287090 | fq.gz | 92.0 MB | ||
EGAF00002287091 | fq.gz | 95.6 MB | ||
EGAF00002287092 | fq.gz | 360.6 MB | ||
EGAF00002287093 | fq.gz | 365.5 MB | ||
EGAF00002287094 | fq.gz | 171.6 MB | ||
EGAF00002287095 | fq.gz | 194.0 MB | ||
EGAF00002287096 | fq.gz | 72.1 MB | ||
EGAF00002287097 | fq.gz | 74.4 MB | ||
EGAF00002287098 | fq.gz | 316.0 MB | ||
EGAF00002287099 | fq.gz | 323.6 MB | ||
EGAF00002287100 | fq.gz | 314.2 MB | ||
EGAF00002287101 | fq.gz | 321.5 MB | ||
EGAF00002287102 | fq.gz | 88.9 MB | ||
EGAF00002287103 | fq.gz | 99.7 MB | ||
EGAF00002287104 | fq.gz | 989.3 MB | ||
EGAF00002287105 | fq.gz | 1.0 GB | ||
EGAF00002287106 | fq.gz | 150.9 MB | ||
EGAF00002287107 | fq.gz | 173.0 MB | ||
EGAF00002287108 | fq.gz | 258.2 MB | ||
EGAF00002287109 | fq.gz | 261.8 MB | ||
EGAF00002287110 | fq.gz | 461.0 MB | ||
EGAF00002287111 | fq.gz | 470.2 MB | ||
EGAF00002287112 | fq.gz | 92.4 MB | ||
EGAF00002287113 | fq.gz | 106.8 MB | ||
EGAF00002287114 | fq.gz | 96.6 MB | ||
EGAF00002287115 | fq.gz | 101.8 MB | ||
EGAF00002287116 | fq.gz | 366.8 MB | ||
EGAF00002287117 | fq.gz | 370.5 MB | ||
EGAF00002287118 | fq.gz | 147.8 MB | ||
EGAF00002287119 | fq.gz | 167.9 MB | ||
EGAF00002287120 | fq.gz | 101.6 MB | ||
EGAF00002287121 | fq.gz | 105.1 MB | ||
EGAF00002287122 | fq.gz | 326.3 MB | ||
EGAF00002287123 | fq.gz | 330.5 MB | ||
EGAF00002287124 | fq.gz | 112.6 MB | ||
EGAF00002287125 | fq.gz | 128.4 MB | ||
EGAF00002287126 | fq.gz | 136.1 MB | ||
EGAF00002287127 | fq.gz | 144.4 MB | ||
EGAF00002287128 | fq.gz | 398.2 MB | ||
EGAF00002287129 | fq.gz | 404.6 MB | ||
EGAF00002287130 | fq.gz | 461.2 MB | ||
EGAF00002287131 | fq.gz | 473.1 MB | ||
EGAF00002287132 | fq.gz | 126.3 MB | ||
EGAF00002287133 | fq.gz | 130.9 MB | ||
EGAF00002287134 | fq.gz | 710.4 MB | ||
EGAF00002287135 | fq.gz | 718.6 MB | ||
EGAF00002287136 | fq.gz | 246.6 MB | ||
EGAF00002287137 | fq.gz | 270.2 MB | ||
EGAF00002287138 | fq.gz | 258.5 MB | ||
EGAF00002287139 | fq.gz | 260.1 MB | ||
EGAF00002287140 | fq.gz | 3.9 GB | ||
EGAF00002287141 | fq.gz | 4.0 GB | ||
EGAF00002287142 | fq.gz | 453.3 MB | ||
EGAF00002287143 | fq.gz | 554.5 MB | ||
EGAF00002287144 | fq.gz | 384.8 MB | ||
EGAF00002287145 | fq.gz | 394.0 MB | ||
EGAF00002287146 | fq.gz | 453.4 MB | ||
EGAF00002287147 | fq.gz | 461.8 MB | ||
EGAF00002287148 | fq.gz | 125.4 MB | ||
EGAF00002287149 | fq.gz | 138.3 MB | ||
EGAF00002287150 | fq.gz | 257.1 MB | ||
EGAF00002287151 | fq.gz | 264.6 MB | ||
EGAF00002287152 | fq.gz | 718.8 MB | ||
EGAF00002287153 | fq.gz | 720.1 MB | ||
EGAF00002287154 | fq.gz | 234.9 MB | ||
EGAF00002287155 | fq.gz | 236.3 MB | ||
EGAF00002287156 | fq.gz | 580.5 MB | ||
EGAF00002287157 | fq.gz | 598.9 MB | ||
EGAF00002287158 | fq.gz | 172.4 MB | ||
EGAF00002287159 | fq.gz | 192.0 MB | ||
EGAF00002287160 | fq.gz | 241.1 MB | ||
EGAF00002287161 | fq.gz | 242.0 MB | ||
EGAF00002287162 | fq.gz | 667.5 MB | ||
EGAF00002287163 | fq.gz | 680.9 MB | ||
EGAF00002287164 | fq.gz | 68.5 MB | ||
EGAF00002287165 | fq.gz | 72.6 MB | ||
EGAF00002287166 | fq.gz | 262.5 MB | ||
EGAF00002287167 | fq.gz | 268.1 MB | ||
EGAF00002287168 | fq.gz | 1.1 GB | ||
EGAF00002287169 | fq.gz | 1.1 GB | ||
EGAF00002287170 | fq.gz | 349.9 MB | ||
EGAF00002287171 | fq.gz | 354.0 MB | ||
EGAF00002287172 | fq.gz | 561.6 MB | ||
EGAF00002287173 | fq.gz | 569.8 MB | ||
EGAF00002287174 | fq.gz | 192.8 MB | ||
EGAF00002287175 | fq.gz | 212.6 MB | ||
EGAF00002287176 | fq.gz | 237.8 MB | ||
EGAF00002287177 | fq.gz | 244.4 MB | ||
EGAF00002287178 | fq.gz | 1.1 GB | ||
EGAF00002287179 | fq.gz | 1.1 GB | ||
EGAF00002287180 | fq.gz | 292.8 MB | ||
EGAF00002287181 | fq.gz | 297.4 MB | ||
EGAF00002287182 | fq.gz | 460.7 MB | ||
EGAF00002287183 | fq.gz | 468.1 MB | ||
EGAF00002287184 | fq.gz | 114.2 MB | ||
EGAF00002287185 | fq.gz | 121.5 MB | ||
EGAF00002287186 | fq.gz | 227.6 MB | ||
EGAF00002287187 | fq.gz | 233.1 MB | ||
EGAF00002287188 | fq.gz | 743.9 MB | ||
EGAF00002287189 | fq.gz | 760.6 MB | ||
EGAF00002287190 | fq.gz | 475.5 MB | ||
EGAF00002287191 | fq.gz | 481.2 MB | ||
EGAF00002287192 | fq.gz | 511.2 MB | ||
EGAF00002287193 | fq.gz | 515.8 MB | ||
EGAF00002287194 | fq.gz | 958.5 MB | ||
EGAF00002287195 | fq.gz | 947.3 MB | ||
EGAF00002287196 | fq.gz | 161.9 MB | ||
EGAF00002287197 | fq.gz | 178.9 MB | ||
EGAF00002287198 | fq.gz | 269.7 MB | ||
EGAF00002287199 | fq.gz | 276.4 MB | ||
EGAF00002287200 | fq.gz | 588.0 MB | ||
EGAF00002287201 | fq.gz | 656.5 MB | ||
EGAF00002287202 | fq.gz | 522.8 MB | ||
EGAF00002287203 | fq.gz | 584.8 MB | ||
EGAF00002287204 | fq.gz | 1.2 GB | ||
EGAF00002287205 | fq.gz | 1.2 GB | ||
EGAF00002287206 | fq.gz | 1.1 GB | ||
EGAF00002287207 | fq.gz | 1.2 GB | ||
EGAF00002287208 | fq.gz | 169.3 MB | ||
EGAF00002287209 | fq.gz | 185.3 MB | ||
EGAF00002287210 | fq.gz | 316.1 MB | ||
EGAF00002287211 | fq.gz | 351.1 MB | ||
EGAF00002287212 | fq.gz | 702.3 MB | ||
EGAF00002287213 | fq.gz | 797.7 MB | ||
EGAF00002287214 | fq.gz | 715.2 MB | ||
EGAF00002287215 | fq.gz | 732.0 MB | ||
EGAF00002287216 | fq.gz | 158.7 MB | ||
EGAF00002287217 | fq.gz | 171.4 MB | ||
EGAF00002287218 | fq.gz | 283.4 MB | ||
EGAF00002287219 | fq.gz | 326.8 MB | ||
EGAF00002287220 | fq.gz | 710.8 MB | ||
EGAF00002287221 | fq.gz | 711.0 MB | ||
EGAF00002287222 | fq.gz | 452.0 MB | ||
EGAF00002287223 | fq.gz | 450.6 MB | ||
EGAF00002287224 | fq.gz | 217.7 MB | ||
EGAF00002287225 | fq.gz | 242.5 MB | ||
EGAF00002287226 | fq.gz | 301.0 MB | ||
EGAF00002287227 | fq.gz | 304.9 MB | ||
EGAF00002287228 | fq.gz | 1.0 GB | ||
EGAF00002287229 | fq.gz | 1.1 GB | ||
EGAF00002287230 | fq.gz | 844.2 MB | ||
EGAF00002287231 | fq.gz | 975.2 MB | ||
EGAF00002287232 | fq.gz | 190.9 MB | ||
EGAF00002287233 | fq.gz | 206.3 MB | ||
EGAF00002287234 | fq.gz | 290.1 MB | ||
EGAF00002287235 | fq.gz | 356.6 MB | ||
EGAF00002287236 | fq.gz | 453.3 MB | ||
EGAF00002287237 | fq.gz | 529.7 MB | ||
EGAF00002287238 | fq.gz | 391.6 MB | ||
EGAF00002287239 | fq.gz | 403.7 MB | ||
EGAF00002287240 | fq.gz | 155.6 MB | ||
EGAF00002287241 | fq.gz | 171.4 MB | ||
EGAF00002287242 | fq.gz | 268.6 MB | ||
EGAF00002287243 | fq.gz | 322.8 MB | ||
EGAF00002287244 | fq.gz | 3.8 GB | ||
EGAF00002287245 | fq.gz | 3.9 GB | ||
EGAF00002287246 | fq.gz | 141.9 MB | ||
EGAF00002287247 | fq.gz | 158.2 MB | ||
EGAF00002287248 | fq.gz | 281.0 MB | ||
EGAF00002287249 | fq.gz | 283.4 MB | ||
EGAF00002287250 | fq.gz | 1.2 GB | ||
EGAF00002287251 | fq.gz | 1.2 GB | ||
EGAF00002287252 | fq.gz | 120.0 MB | ||
EGAF00002287253 | fq.gz | 123.7 MB | ||
EGAF00002287254 | fq.gz | 346.6 MB | ||
EGAF00002287255 | fq.gz | 353.1 MB | ||
EGAF00002287256 | fq.gz | 127.3 MB | ||
EGAF00002287257 | fq.gz | 140.5 MB | ||
EGAF00002287258 | fq.gz | 126.0 MB | ||
EGAF00002287259 | fq.gz | 130.3 MB | ||
EGAF00002287260 | fq.gz | 234.2 MB | ||
EGAF00002287261 | fq.gz | 237.6 MB | ||
EGAF00002287262 | fq.gz | 131.5 MB | ||
EGAF00002287263 | fq.gz | 150.2 MB | ||
EGAF00002287264 | fq.gz | 126.8 MB | ||
EGAF00002287265 | fq.gz | 130.8 MB | ||
EGAF00002287266 | fq.gz | 314.1 MB | ||
EGAF00002287267 | fq.gz | 318.2 MB | ||
EGAF00002287268 | fq.gz | 173.2 MB | ||
EGAF00002287269 | fq.gz | 199.4 MB | ||
EGAF00002287270 | fq.gz | 131.0 MB | ||
EGAF00002287271 | fq.gz | 134.9 MB | ||
EGAF00002287272 | fq.gz | 412.9 MB | ||
EGAF00002287273 | fq.gz | 419.1 MB | ||
EGAF00002287274 | fq.gz | 511.5 MB | ||
EGAF00002287275 | fq.gz | 521.4 MB | ||
EGAF00002287276 | fq.gz | 109.6 MB | ||
EGAF00002287277 | fq.gz | 114.4 MB | ||
EGAF00002287278 | fq.gz | 363.1 MB | ||
EGAF00002287279 | fq.gz | 366.6 MB | ||
EGAF00002287280 | fq.gz | 106.6 MB | ||
EGAF00002287281 | fq.gz | 110.5 MB | ||
EGAF00002287282 | fq.gz | 455.7 MB | ||
EGAF00002287283 | fq.gz | 508.7 MB | ||
EGAF00002287284 | fq.gz | 478.8 MB | ||
EGAF00002287285 | fq.gz | 483.6 MB | ||
EGAF00002287286 | fq.gz | 561.9 MB | ||
EGAF00002287287 | fq.gz | 559.5 MB | ||
EGAF00002287288 | fq.gz | 161.9 MB | ||
EGAF00002287289 | fq.gz | 179.1 MB | ||
EGAF00002287290 | fq.gz | 283.2 MB | ||
EGAF00002287291 | fq.gz | 288.1 MB | ||
EGAF00002287292 | fq.gz | 691.4 MB | ||
EGAF00002287293 | fq.gz | 706.0 MB | ||
EGAF00002287294 | fq.gz | 62.5 MB | ||
EGAF00002287295 | fq.gz | 68.0 MB | ||
EGAF00002287296 | fq.gz | 312.0 MB | ||
EGAF00002287297 | fq.gz | 314.4 MB | ||
EGAF00002287298 | fq.gz | 767.0 MB | ||
EGAF00002287299 | fq.gz | 774.2 MB | ||
EGAF00002287300 | fq.gz | 207.9 MB | ||
EGAF00002287301 | fq.gz | 235.4 MB | ||
EGAF00002287302 | fq.gz | 327.8 MB | ||
EGAF00002287303 | fq.gz | 331.9 MB | ||
EGAF00002287304 | fq.gz | 392.7 MB | ||
EGAF00002287305 | fq.gz | 398.2 MB | ||
EGAF00002287306 | fq.gz | 141.3 MB | ||
EGAF00002287307 | fq.gz | 158.9 MB | ||
EGAF00002287308 | fq.gz | 151.3 MB | ||
EGAF00002287309 | fq.gz | 156.1 MB | ||
EGAF00002287310 | fq.gz | 847.1 MB | ||
EGAF00002287311 | fq.gz | 845.3 MB | ||
EGAF00002287312 | fq.gz | 218.7 MB | ||
EGAF00002287313 | fq.gz | 245.5 MB | ||
EGAF00002287314 | fq.gz | 294.8 MB | ||
EGAF00002287315 | fq.gz | 296.4 MB | ||
EGAF00002287316 | fq.gz | 602.4 MB | ||
EGAF00002287317 | fq.gz | 615.6 MB | ||
EGAF00002287318 | fq.gz | 118.2 MB | ||
EGAF00002287319 | fq.gz | 134.2 MB | ||
EGAF00002287320 | fq.gz | 261.3 MB | ||
EGAF00002287321 | fq.gz | 262.5 MB | ||
EGAF00002287322 | fq.gz | 160.0 MB | ||
EGAF00002287323 | fq.gz | 164.5 MB | ||
EGAF00002287324 | fq.gz | 187.0 MB | ||
EGAF00002287325 | fq.gz | 207.9 MB | ||
EGAF00002287326 | fq.gz | 111.2 MB | ||
EGAF00002287327 | fq.gz | 115.0 MB | ||
EGAF00002287328 | fq.gz | 118.2 MB | ||
EGAF00002287329 | fq.gz | 134.1 MB | ||
EGAF00002287330 | fq.gz | 266.0 MB | ||
EGAF00002287331 | fq.gz | 267.3 MB | ||
EGAF00002287332 | fq.gz | 208.9 MB | ||
EGAF00002287333 | fq.gz | 234.1 MB | ||
EGAF00002287334 | fq.gz | 348.8 MB | ||
EGAF00002287335 | fq.gz | 356.1 MB | ||
EGAF00002287336 | fq.gz | 355.3 MB | ||
EGAF00002287337 | fq.gz | 369.2 MB | ||
EGAF00002287338 | fq.gz | 297.6 MB | ||
EGAF00002287339 | fq.gz | 307.0 MB | ||
EGAF00002287340 | fq.gz | 491.9 MB | ||
EGAF00002287341 | fq.gz | 495.9 MB | ||
EGAF00002287342 | fq.gz | 112.4 MB | ||
EGAF00002287343 | fq.gz | 123.0 MB | ||
EGAF00002287344 | fq.gz | 278.7 MB | ||
EGAF00002287345 | fq.gz | 282.0 MB | ||
EGAF00002287346 | fq.gz | 196.8 MB | ||
EGAF00002287347 | fq.gz | 201.1 MB | ||
EGAF00002287348 | fq.gz | 392.6 MB | ||
EGAF00002287349 | fq.gz | 403.8 MB | ||
EGAF00002287350 | fq.gz | 320.7 MB | ||
EGAF00002287351 | fq.gz | 322.9 MB | ||
EGAF00002287352 | fq.gz | 378.4 MB | ||
EGAF00002287353 | fq.gz | 383.6 MB | ||
EGAF00002287354 | fq.gz | 370.9 MB | ||
EGAF00002287355 | fq.gz | 379.1 MB | ||
EGAF00002287356 | fq.gz | 111.0 MB | ||
EGAF00002287357 | fq.gz | 113.5 MB | ||
EGAF00002287358 | fq.gz | 436.2 MB | ||
EGAF00002287359 | fq.gz | 444.3 MB | ||
EGAF00002287360 | fq.gz | 351.0 MB | ||
EGAF00002287361 | fq.gz | 359.3 MB | ||
EGAF00002287362 | fq.gz | 328.5 MB | ||
EGAF00002287363 | fq.gz | 331.9 MB | ||
EGAF00002287364 | fq.gz | 390.7 MB | ||
EGAF00002287365 | fq.gz | 399.3 MB | ||
EGAF00002287366 | fq.gz | 1.1 GB | ||
EGAF00002287367 | fq.gz | 1.2 GB | ||
EGAF00002287368 | fq.gz | 440.2 MB | ||
EGAF00002287369 | fq.gz | 452.2 MB | ||
EGAF00002287370 | fq.gz | 304.4 MB | ||
EGAF00002287371 | fq.gz | 307.0 MB | ||
EGAF00002287372 | fq.gz | 213.6 MB | ||
EGAF00002287373 | fq.gz | 217.7 MB | ||
EGAF00002287374 | fq.gz | 458.3 MB | ||
EGAF00002287375 | fq.gz | 465.9 MB | ||
EGAF00002287376 | fq.gz | 499.6 MB | ||
EGAF00002287377 | fq.gz | 514.4 MB | ||
EGAF00002287378 | fq.gz | 372.4 MB | ||
EGAF00002287379 | fq.gz | 377.8 MB | ||
EGAF00002287380 | fq.gz | 915.6 MB | ||
EGAF00002287381 | fq.gz | 1.0 GB | ||
EGAF00002287382 | fq.gz | 273.5 MB | ||
EGAF00002287383 | fq.gz | 280.1 MB | ||
EGAF00002287384 | fq.gz | 565.2 MB | ||
EGAF00002287385 | fq.gz | 569.0 MB | ||
EGAF00002287386 | fq.gz | 1.1 GB | ||
EGAF00002287387 | fq.gz | 1.2 GB | ||
EGAF00002287388 | fq.gz | 105.1 MB | ||
EGAF00002287389 | fq.gz | 116.5 MB | ||
EGAF00002287390 | fq.gz | 507.8 MB | ||
EGAF00002287391 | fq.gz | 527.4 MB | ||
EGAF00002287392 | fq.gz | 752.0 MB | ||
EGAF00002287393 | fq.gz | 765.0 MB | ||
EGAF00002287394 | fq.gz | 271.4 MB | ||
EGAF00002287395 | fq.gz | 294.3 MB | ||
EGAF00002287396 | fq.gz | 291.9 MB | ||
EGAF00002287397 | fq.gz | 303.2 MB | ||
EGAF00002287398 | fq.gz | 363.0 MB | ||
EGAF00002287399 | fq.gz | 373.3 MB | ||
EGAF00002287400 | fq.gz | 491.2 MB | ||
EGAF00002287401 | fq.gz | 503.3 MB | ||
EGAF00002287402 | fq.gz | 269.3 MB | ||
EGAF00002287403 | fq.gz | 278.6 MB | ||
EGAF00002287404 | fq.gz | 246.4 MB | ||
EGAF00002287405 | fq.gz | 253.1 MB | ||
EGAF00002287406 | fq.gz | 251.3 MB | ||
EGAF00002287407 | fq.gz | 254.7 MB | ||
EGAF00002287408 | fq.gz | 377.3 MB | ||
EGAF00002287409 | fq.gz | 381.8 MB | ||
EGAF00002287410 | fq.gz | 114.9 MB | ||
EGAF00002287411 | fq.gz | 130.8 MB | ||
356 Files (149.1 GB) |