Recalibrated whole-exome sequencing alignment data of papillary thyroid cancer of Saudi Arabia
The dataset consists of samples from papillary thyroid cancer patients. A total of 11 DNA samples from blood/normal and cancer tissue are subjected to whole exome sequencing using Illumina. The fastq files generated were aligned with reference genome ‘hg19’, duplicates were marked, realignment around indels and quality recalibration were performed to produce good quality variants. The recalibrated “.bam” files are included with this dataset.
- 11 samples
- DAC: EGAC00001000010
- HMB DUO:0000006 (version: 2021-02-23)health or medical or biomedical researchThis data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.
- NPUNCU DUO:0000018 (version: 2021-02-23)not for profit, non commercial use onlyThis data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.
- PS DUO:0000027 (version: 2021-02-23)project specific restrictionThis data use modifier indicates that use is limited to use within an approved project.
- GRU DUO:0000042 (version: 2021-02-23)general research useThis data use permission indicates that use is allowed for general research use for any research purpose.
ICGC Data Access
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00002258628 | bam | 13.1 GB | ||
| EGAF00002258629 | bam | 14.3 GB | ||
| EGAF00002258630 | bam | 16.5 GB | ||
| EGAF00002258631 | bam | 22.0 GB | ||
| EGAF00002258632 | bam | 15.9 GB | ||
| EGAF00002258633 | bam | 21.0 GB | ||
| EGAF00002258634 | bam | 20.8 GB | ||
| EGAF00002258635 | bam | 15.9 GB | ||
| EGAF00002258636 | bam | 23.1 GB | ||
| EGAF00002258637 | bam | 19.4 GB | ||
| EGAF00002258638 | bam | 17.9 GB | ||
| 11 Files (199.7 GB) | ||||