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Whole genome sequencing of multiple myeloma patient samples.

Tumor (CD138+ plasma cells) and non-tumor (peripheral blood white cells or stem cell harvest) DNA from patients with a plasma cell dyscrasias were sequenced. Whole genome sequencing using high molecular weight DNA was performed using the 10X Genomics Chromium platform on either a HiSeq4000 or NovaSeq (Illumina) using 100 to 150 bp paired-end reads. The dataset consists of 111 patients, and 223 samples in total (matched tumor and control per patient; one patient had 2 tumor samples sequenced). Diseases consisted of 2 MGUS patients, 8 SMM patients, 91 newly diagnosed myeloma patients, 1 previously treated patient, 4 relapsed MM patients, and 5 PCL patients. Paired RNA-seq data are available for 81 of the samples under study EGAS00001003411.

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UAMS - Deidentified Data Transfer Agreement 2016

Terms subject to change based on each transfer 2016 Data Transfer Agreement This Data Transfer Agreement (this "Agreement") is entered into effective as of the last signature date of this Agreement (“Effective Date”) by and between [company] ("Recipient"),and the Board of Trustees of the University of Arkansas acting for and on behalf of the University of Arkansas for Medical Sciences ("Provider") in order to document the transferof certain de-identified data, as defined below and the mutual covenants and promises hereinafter set forth as agreed to by Recipient and Provider. Provider and Recipient maybe referred to herein individually as a "Party" or collectively as the "Parties".WHEREAS, the Parties agree that this Agreement shall govern only the transfer of the Study Data, as defined herein, if the Parties agree in writing to same. 1. "Study Data" shall be defined to mean de-identified data collected under informed consent related to the research study entitled [please insert title]. 2. Provider certifies that the Study Data shall be provided in a de-identified fashion. Under no circumstances shall Provider provide Recipient with the name, address, social security number, or any other identifier which would permit Recipient to identify the research subjects from whom such Study Data was collected. The Recipient, through [recipient scientist name], certifies that they neither have nor will seek to obtain information from Provider that identifies or can be used to identify or link de-identified data to any research subject, and in the event that either receives any PHI, such PHI shall be kept confidential, not used or disclosed, and shall be immediately returned to Provider. 3. Subject to, and in accordance with terms set in this Agreement, Recipient shall use Study Data for the following research purposes only (and for no other purpose): [indicate purpose/research/reference number if applicable] 4. Recipient shall only disclose Study Data to Recipient’s employees who have a need to know and who are directly responsible for the activities related to the Purpose. The Recipient, through [recipient scientist name], who shall serve as the Principal Investigator of the research study utilizing the Study Data, will ensure that all such parties are informed of the terms and conditions under this Agreement. 5. Recipient shall not use or further disclose the Study Data other than as permitted or required by this Agreement or as otherwise required by law. Recipient shall report to Provider immediately within upon Recipient’s discovery of any unauthorized use or disclosure of the Study Data not provided for by this Agreement. Recipient shall provide the following information: (1) the nature of the use or disclosure; (2) the information used or disclosed; (3) who made the use or disclosure; and (4) what corrective action will be taken by Recipient as a result of the use or disclosure. Recipient shall take any other actions available to it to mitigate any detrimental effects of the use or disclosure. 6. Recipient and its employees shall not identify or attempt to identify the individual(s) to whom the Study Data pertains or contact or attempt to contact the individual(s) who Recipient believes to be the subject of any Study Data. The obligations set forth in this Section 6 shall survive the termination or expiration of this Agreement for any reason. 7. As principal investigator, [recipient scientist name] has agreed to provide any results gained from the analysis of the Study Data with Provider. Provider Institution shall maintain these results in confidence pending publication and/or presentation of the results of the analysis being conducted on the Study Data. However, if Recipient has not published within six (6) months of the completion of the Study at Recipient’s institution, Provider shall have the right to publish or present independently any results from its work at Provider’s institution. [this term will change to joint publication if that is what is agreed]. 8. Subject to Applicable Laws, none of Provider, Principal Investigator, or Recipient shall use the name, trademark, trade name or logo of the other in any publication, press release, or promotional material with respect to the Study without the prior written approval of the other party; provided, however, that Recipient shall have the right to identify Provider as the site at which the Study Data was generated and to identify those individuals responsible for conducting the Study. Provider retains the right to use Recipient’s name, and a non-confidential descriptor, on any and all funding applications it may seek in the future. 9. This Agreement may be terminated by either Party, for any reason, upon thirty (30) days' advance written notice to the other Party, and this Agreement may be terminated upon mutual written agreement signed by the authorized representatives of both of the Parties. Notwithstanding anything to the contrary, Recipient and [recipient scientist name] shall not use or disclose any information provided by Provider except in accordance with the terms of this Agreement and applicable law. This obligation shall extend in perpetuity. Recipient agrees that upon termination of this Agreement, Recipient shall, at its expense, (a) return or destroy all Study Data received from Provider and retain no copies of such Study Data. 10. Any notice required or permitted hereunder shall be in writing and shall be deemed given as of the date it is: (i) delivered by hand; (ii) received by registered or certified mail, postage prepaid, return receipt requested; (iii) confirmed as received if by facsimile; or (iv) received by nationally recognized, overnight courier, and addressed to the party to receive such notice at the address set forth below, or such other address as is subsequently specified in writing. If to Recipient: [ please provide ] If to Provider: University of Arkansas for Medical Sciences By Post: 4301 West Markham Drive, MS#860 Little Rock, AR 72205 By Courier: Ed II, 5th Floor, Suite 104 Little Rock, AR 72205 Attn: Sr. Research Contracts Attorney 11. Recipient and Provider shall not assign or transfer any rights or obligations hereunder, or any part hereof, without the prior written consent of the other Party. 12. Entire Agreement. This Agreement constitutes the entire agreement and understanding between the Parties and supersedes any prior or contemporaneous negotiations, agreements, understandings, or arrangements of any nature or kind with respect to the subject matter herein. 13. This Agreement may be executed simultaneously in any number of counterparts (including scanned copies of signature in portable document format “pdf” and delivered via electronic mail), each of which shall be deemed an original and all of which taken together shall constitute one and the same instrument. IN WITNESS WHEREOF, the parties have executed this Data Transfer Agreement as of the [Effective Date] Board of Trustees of the University of Arkansas [Name of Recpient] Acting For And On Behalf Of The University of Arkansas for Medical Sciences By: ___________________________________ By: ________________________ Name: Suzanne Alstadt Name: Title: Director, Office of Research and Title: Sponsored Programs Date: _________________________________ Date: ______________________ READ AND UNDERSTOOD BY PRINCIPAL INVESTIGATOR By: ________________________________ Date: _______________________________

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002233612 bam 206.9 GB
EGAF00002233613 bam 219.8 GB
EGAF00002233614 bam 159.0 GB
EGAF00002233615 bam 148.1 GB
EGAF00002233616 bam 108.2 GB
EGAF00002233617 bam 124.9 GB
EGAF00002233618 bam 135.4 GB
EGAF00002233619 bam 127.5 GB
EGAF00002233620 bam 108.0 GB
EGAF00002233621 bam 96.2 GB
EGAF00002233622 bam 175.0 GB
EGAF00002233623 bam 150.3 GB
EGAF00002233624 bam 163.9 GB
EGAF00002233625 bam 193.6 GB
EGAF00002233626 bam 128.7 GB
EGAF00002233627 bam 147.1 GB
EGAF00002233628 bam 143.1 GB
EGAF00002233629 bam 154.6 GB
EGAF00002233630 bam 107.7 GB
EGAF00002233631 bam 131.8 GB
EGAF00002233632 bam 134.1 GB
EGAF00002233633 bam 151.0 GB
EGAF00002233634 bam 151.9 GB
EGAF00002233635 bam 97.9 GB
EGAF00002233636 bam 108.4 GB
EGAF00002233637 bam 148.7 GB
EGAF00002233638 bam 147.0 GB
EGAF00002233639 bam 142.9 GB
EGAF00002233640 bam 140.0 GB
EGAF00002233641 bam 129.9 GB
EGAF00002233642 bam 131.1 GB
EGAF00002233643 bam 149.0 GB
EGAF00002233644 bam 109.5 GB
EGAF00002233645 bam 139.4 GB
EGAF00002233646 bam 138.7 GB
EGAF00002233647 bam 107.7 GB
EGAF00002233648 bam 97.4 GB
EGAF00002233649 bam 158.5 GB
EGAF00002233650 bam 198.4 GB
EGAF00002233651 bam 185.4 GB
EGAF00002233652 bam 219.9 GB
EGAF00002233653 bam 278.1 GB
EGAF00002233654 bam 193.3 GB
EGAF00002233655 bam 264.9 GB
EGAF00002233656 bam 237.7 GB
EGAF00002233657 bam 231.8 GB
EGAF00002233658 bam 232.1 GB
EGAF00002233659 bam 222.9 GB
EGAF00002233660 bam 244.8 GB
EGAF00002233661 bam 201.0 GB
EGAF00002233662 bam 181.5 GB
EGAF00002233663 bam 175.3 GB
EGAF00002233664 bam 231.3 GB
EGAF00002233665 bam 210.9 GB
EGAF00002233666 bam 204.3 GB
EGAF00002233667 bam 258.7 GB
EGAF00002233668 bam 241.8 GB
EGAF00002233669 bam 251.9 GB
EGAF00002233670 bam 247.2 GB
EGAF00002233671 bam 254.4 GB
EGAF00002233672 bam 176.0 GB
EGAF00002233673 bam 228.6 GB
EGAF00002233674 bam 205.6 GB
EGAF00002233675 bam 205.2 GB
EGAF00002233676 bam 142.0 GB
EGAF00002233677 bam 145.2 GB
EGAF00002233678 bam 138.1 GB
EGAF00002233679 bam 144.5 GB
EGAF00002233680 bam 150.8 GB
EGAF00002233681 bam 155.1 GB
EGAF00002233682 bam 141.6 GB
EGAF00002233683 bam 119.1 GB
EGAF00002233684 bam 138.2 GB
EGAF00002233685 bam 128.4 GB
EGAF00002233686 bam 154.7 GB
EGAF00002233687 bam 143.0 GB
EGAF00002233688 bam 122.2 GB
EGAF00002233689 bam 122.1 GB
EGAF00002233690 bam 157.1 GB
EGAF00002233691 bam 169.8 GB
EGAF00002233692 bam 155.4 GB
EGAF00002233693 bam 148.8 GB
EGAF00002233694 bam 137.4 GB
EGAF00002233695 bam 148.8 GB
EGAF00002233696 bam 159.9 GB
EGAF00002233697 bam 155.6 GB
EGAF00002233698 bam 154.3 GB
EGAF00002233699 bam 153.9 GB
EGAF00002233700 bam 177.3 GB
EGAF00002233701 bam 217.0 GB
EGAF00002233702 bam 158.9 GB
EGAF00002233703 bam 181.0 GB
EGAF00002233704 bam 163.0 GB
EGAF00002233705 bam 224.3 GB
EGAF00002233706 bam 397.8 GB
EGAF00002233707 bam 219.1 GB
EGAF00002233708 bam 220.5 GB
EGAF00002233709 bam 146.6 GB
EGAF00002233710 bam 144.4 GB
EGAF00002233711 bam 141.2 GB
EGAF00002233712 bam 173.2 GB
EGAF00002233713 bam 142.5 GB
EGAF00002233714 bam 147.4 GB
EGAF00002233715 bam 152.7 GB
EGAF00002233716 bam 163.8 GB
EGAF00002233717 bam 148.5 GB
EGAF00002233718 bam 160.9 GB
EGAF00002233719 bam 161.7 GB
EGAF00002233720 bam 139.1 GB
EGAF00002233721 bam 157.4 GB
EGAF00002233722 bam 155.7 GB
EGAF00002233723 bam 180.3 GB
EGAF00002233724 bam 230.9 GB
EGAF00002233725 bam 213.0 GB
EGAF00002233726 bam 173.7 GB
EGAF00002233727 bam 133.4 GB
EGAF00002233728 bam 153.1 GB
EGAF00002233729 bam 150.2 GB
EGAF00002233730 bam 114.8 GB
EGAF00002233731 bam 139.2 GB
EGAF00002233732 bam 162.8 GB
EGAF00002233733 bam 139.2 GB
EGAF00002233734 bam 135.5 GB
EGAF00002233735 bam 137.8 GB
EGAF00002233736 bam 136.9 GB
EGAF00002233737 bam 135.1 GB
EGAF00002233738 bam 133.3 GB
EGAF00002233739 bam 156.4 GB
EGAF00002233740 bam 218.6 GB
EGAF00002233741 bam 240.8 GB
EGAF00002233742 bam 194.6 GB
EGAF00002233743 bam 238.1 GB
EGAF00002233744 bam 184.2 GB
EGAF00002233745 bam 189.8 GB
EGAF00002233746 bam 173.3 GB
EGAF00002233747 bam 200.9 GB
EGAF00002233748 bam 226.1 GB
EGAF00002233749 bam 213.9 GB
EGAF00002233750 bam 190.4 GB
EGAF00002233751 bam 279.9 GB
EGAF00002233752 bam 231.5 GB
EGAF00002233753 bam 195.9 GB
EGAF00002233754 bam 187.4 GB
EGAF00002233755 bam 174.8 GB
EGAF00002233756 bam 142.8 GB
EGAF00002233757 bam 160.6 GB
EGAF00002233758 bam 150.4 GB
EGAF00002233759 bam 184.0 GB
EGAF00002233760 bam 132.6 GB
EGAF00002233761 bam 149.3 GB
EGAF00002233762 bam 154.7 GB
EGAF00002233763 bam 141.5 GB
EGAF00002233764 bam 133.0 GB
EGAF00002233765 bam 143.8 GB
EGAF00002233766 bam 142.6 GB
EGAF00002233767 bam 129.9 GB
EGAF00002233768 bam 135.2 GB
EGAF00002233769 bam 234.1 GB
EGAF00002233770 bam 168.0 GB
EGAF00002233771 bam 159.3 GB
EGAF00002233772 bam 173.4 GB
EGAF00002233773 bam 130.4 GB
EGAF00002233774 bam 116.5 GB
EGAF00002233775 bam 170.3 GB
EGAF00002233776 bam 157.5 GB
EGAF00002233777 bam 153.3 GB
EGAF00002233778 bam 156.3 GB
EGAF00002233779 bam 217.0 GB
EGAF00002233780 bam 172.9 GB
EGAF00002233781 bam 158.6 GB
EGAF00002233782 bam 155.5 GB
EGAF00002233783 bam 155.8 GB
EGAF00002233784 bam 80.2 GB
EGAF00002233785 bam 159.9 GB
EGAF00002233786 bam 145.7 GB
EGAF00002233787 bam 154.4 GB
EGAF00002233788 bam 147.0 GB
EGAF00002233789 bam 139.4 GB
EGAF00002233790 bam 130.0 GB
EGAF00002233791 bam 242.5 GB
EGAF00002233792 bam 170.1 GB
EGAF00002233793 bam 131.2 GB
EGAF00002233794 bam 131.2 GB
EGAF00002233795 bam 159.2 GB
EGAF00002233796 bam 138.2 GB
EGAF00002233797 bam 143.1 GB
EGAF00002233798 bam 243.2 GB
EGAF00002233799 bam 149.7 GB
EGAF00002233800 bam 162.6 GB
EGAF00002233801 bam 162.7 GB
EGAF00002233802 bam 144.9 GB
EGAF00002233803 bam 145.0 GB
EGAF00002233804 bam 152.7 GB
EGAF00002233805 bam 147.9 GB
EGAF00002233806 bam 167.1 GB
EGAF00002233807 bam 105.9 GB
EGAF00002233808 bam 141.8 GB
EGAF00002233809 bam 129.6 GB
EGAF00002233810 bam 160.6 GB
EGAF00002233811 bam 164.7 GB
EGAF00002233812 bam 147.9 GB
EGAF00002233813 bam 128.6 GB
EGAF00002233814 bam 200.9 GB
EGAF00002233815 bam 159.3 GB
EGAF00002233816 bam 175.3 GB
EGAF00002233817 bam 191.2 GB
EGAF00002233818 bam 156.9 GB
EGAF00002233819 bam 143.9 GB
EGAF00002233820 bam 170.9 GB
EGAF00002233821 bam 128.8 GB
EGAF00002233822 bam 166.5 GB
EGAF00002233823 bam 131.7 GB
EGAF00002233824 bam 129.4 GB
EGAF00002233825 bam 139.5 GB
EGAF00002233826 bam 158.2 GB
EGAF00002233827 bam 141.1 GB
EGAF00002233828 bam 248.5 GB
EGAF00002233829 bam 240.3 GB
EGAF00002233830 bam 139.3 GB
EGAF00002233831 bam 144.3 GB
EGAF00002233832 bam 142.3 GB
EGAF00002233833 bam 147.9 GB
EGAF00002233834 bam 109.3 GB
EGAF00002233835 bam 134.6 GB
EGAF00002233836 bam 244.2 GB
EGAF00002233837 bam 249.1 GB
EGAF00002233838 bam 308.1 GB
EGAF00002233839 bam 256.3 GB
EGAF00002233840 bam 232.2 GB
EGAF00002233841 bam 230.6 GB
EGAF00002233842 bam 211.5 GB
231 Files (38.8 TB)