Dataset for the study - Detection of cell-free DNA fragmentation and copy number alterations in cerebrospinal fluid from glioma patients
FASTQ files from sequencing to < 0.4x depth of coverage of thirteen glioma patients. Indexed sequencing libraries were prepared using a commercially available kit (ThruPLEX-Plasma Seq, Rubicon Genomics). Libraries were pooled in equimolar amounts and sequenced on a HiSeq 4000 (Illumina) generating 150-bp paired-end reads.
- 13 samples
- DAC: EGAC00001001037
- Technology: Illumina HiSeq 4000
Data access committee policy for the study - Detection of cell-free DNA fragmentation and copy number alterations in cerebrospinal fluid from glioma patients
Conditions of access: The account holder will abide by all current and future policies of the EGA for computer use All EGA specific policies and standard operating procedures (SOPs) must also be followed. All applicable policies will be provided to the authorized users. Method of access: The EGA will create a personal account for the authorized person. The account username and password together with a RSA key provide access to the secure EGA infrastructure. A separate document with detailed guidelines on how to access and use these tools is provided to each account holder. The EGA help-desk provides training when needed. Review: All individuals request access to the EGA user authorization tools will be reviewed annually EGA committee. Request of access: Access is granted to those Data Access Committee (DAC) members named in this section. The DAC members reserve the right to decline request to access.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00002216850 | fq.gz | 293.7 MB | ||
| EGAF00002216851 | fq.gz | 328.4 MB | ||
| EGAF00002216852 | fq.gz | 555.5 MB | ||
| EGAF00002216853 | fq.gz | 619.1 MB | ||
| EGAF00002216854 | fq.gz | 416.3 MB | ||
| EGAF00002216855 | fq.gz | 478.7 MB | ||
| EGAF00002216856 | fq.gz | 1.0 GB | ||
| EGAF00002216857 | fq.gz | 1.2 GB | ||
| EGAF00002216858 | fq.gz | 445.4 MB | ||
| EGAF00002216859 | fq.gz | 508.8 MB | ||
| EGAF00002216860 | fq.gz | 1.1 GB | ||
| EGAF00002216861 | fq.gz | 1.3 GB | ||
| EGAF00002216862 | fq.gz | 2.2 GB | ||
| EGAF00002216863 | fq.gz | 2.5 GB | ||
| EGAF00002216864 | fq.gz | 1.0 GB | ||
| EGAF00002216865 | fq.gz | 1.2 GB | ||
| EGAF00002216866 | fq.gz | 1.1 GB | ||
| EGAF00002216867 | fq.gz | 1.3 GB | ||
| EGAF00002216868 | fq.gz | 1.1 GB | ||
| EGAF00002216869 | fq.gz | 1.3 GB | ||
| EGAF00002216870 | fq.gz | 473.4 MB | ||
| EGAF00002216871 | fq.gz | 527.0 MB | ||
| EGAF00002216872 | fq.gz | 754.3 MB | ||
| EGAF00002216873 | fq.gz | 875.2 MB | ||
| EGAF00002216874 | fq.gz | 609.7 MB | ||
| EGAF00002216875 | fq.gz | 611.6 MB | ||
| 26 Files (23.8 GB) | ||||