Raw sequencing data for donor and patient fecal samples
Microbiome analysis was performed on the patient samples collected pre-FMT and on days after FMT, and on samples collected from the FMT donor. Genomic bacterial DNA was extracted from fecal samples using the QIAamp DNA Stool kit (Qiagen, Hilden, Germany), with the addition of a bead-beating lysis step. Genomic 16S ribosomal-RNA V4 variable regions were amplified and sequenced on the Illumina MiSeq platform.
- 11 samples
- DAC: EGAC00001001021
- Technology: Illumina MiSeq
All data will be available as described
Patient-related data not included in the paper were generated as part of clinical trials and may be subject to patient confidentiality. Any data and materials that can be shared will be released via a Material Transfer Agreement. Sequence data has been deposited at the European Genome-phenome Archive (EGA).
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001003217 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00002195005 | fastq.gz | 1.7 MB | ||
| EGAF00002195006 | fastq.gz | 2.2 MB | ||
| EGAF00002195007 | fastq.gz | 937.8 kB | ||
| EGAF00002195008 | fastq.gz | 857.6 kB | ||
| EGAF00002195009 | fastq.gz | 270.8 kB | ||
| EGAF00002195010 | fastq.gz | 906.0 kB | ||
| EGAF00002195011 | fastq.gz | 347.5 kB | ||
| EGAF00002195012 | fastq.gz | 1.3 MB | ||
| EGAF00002195013 | fastq.gz | 176.6 kB | ||
| EGAF00002195014 | fastq.gz | 970.6 kB | ||
| EGAF00002195015 | fastq.gz | 495.0 kB | ||
| 11 Files (10.2 MB) | ||||