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Somatic mutations of 256 whole-genome sequenced colorectal cancer tumors.

Somatic mutations of 256 whole-genome sequenced colorectal tumors. 234 MSS, 19 MSI and 3 POLE mutants. See Katainen R. et al. CTCF/cohesin-binding sites are frequently mutated in cancer, Nature Genetics 2015. doi:10.1038/ng.3335

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Data Access Agreement of the study "Somatic point mutation data from microsatellite unstable colorectal cancers (EGAS00001003101)"

Data Access Agreement of the study Somatic point mutation data from microsatellite unstable colorectal cancers (EGAS00001003101) This agreement governs the terms of access to the controlled access datasets generated by the Department of Cancer Genetics of the University of Helsinki. In signing this agreement, you agree to be bound by the terms and conditions of access set out therein. For the sake of clarity, the terms of access set out in this agreement apply to the User and to the User Institution(s) (as defined below). The current agreement is limited to the data set EGAS00001003101 (as defined below) and does not cover other data generated at the different centres participating in the project. Definitions Data Producer: Department of Cancer Genetics of the University of Helsinki External Collaborator: A collaborator of the User, working for an institution other than the User Institution(s) (see below for definitions of User and User Institution(s)). Data set: The Controlled Access Datasets of the study EGAS00001003101 generated by the Data Producer. Project: “Somatic point mutation data from microsatellite unstable colorectal cancers” Research Participant: An individual having contributed their personal data to the project. User: An applicant (principal investigator), having signed this Data Access Agreement, whose User Institution has co-signed this Data Access Agreement, both of them having received acknowledgement of its acceptance. User Institution(s): Institution(s) at which the User is employed, affiliated or enrolled. A representative of it has co-signed this Data Access Agreement with the User and received acknowledgement of its acceptance. Terms and Conditions: In signing this Agreement: 1. The User and the User Institution(s) agree to use the Data only for the advancement of medical research. And not to use the data for the creation of products for sale or for any commercial purpose. 2. The User and the User Institution(s) agree to use the Data for no other purpose than the approved purpose and project described in the collaboration proposal; use of the Data for a other/new purpose or project will require a new application and approval. 3. The User and the User Institution(s) agree to preserve, at all times, the confidentiality of the information and Data set. In particular, they undertake not to use, or attempt to use the Data set to compromise or otherwise infringe the confidentiality of information on Research Participants. 4. The User and the User Institution(s) agree to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. The User and the User Institution(s) agree not to pursue any research with the goal to identify Research Participants and not to link or combine the Data set provided under this agreement to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User and the User Institution(s), or is freely available without restriction. 5. The User and the User Institution(s) agree not to transfer or disclose the Data set, in whole or part, or any material derived from the Data set, to anyone not listed in this application form, except as necessary for data safety monitoring, national audits or program management. Should the User or the User Institution(s) wish to share the Data set with an External Collaborator, the External Collaborator must complete a separate Collaborator's Form for Access to the Data set. 6. The User and the User Institution(s) accept that the Data is protected by and subject to international laws, including but not limited to the UK Data Protection Act 1998, and that You are responsible for ensuring compliance with any such applicable law. The Consortium Data Access Committee reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures in countries that have no national laws comparable to that which pertain in the EAA. 7. The User and the User Institution(s) accept that Data producers, depositors or copyright holders, or the funders of the Data set or any part of the Data set supplied: a) bear no legal responsibility for the accuracy or comprehensiveness of the Data set; b) accept no liability for indirect, consequential, or incidental, damages or losses arising from use of the Data set, or from the unavailability of, interruption in Data set access for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data set, over and above that published by the Consortium. 8. The User and the User Institution(s) agree not to make intellectual property claims on the Data set (including somatic mutations) and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of the Data set, or conclusion drawn directly from the Data set. 9. The User and the User Institution(s) can elect to perform further research that would add intellectual and resource capital to the data set and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User and the User Institution(s) agree to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health’s, Best Practices for the Licensing of Genomic Inventions or a similar national guideline that is in conformity with the OECD, Guidelines for the Licensing of the Genetic Inventions. 10. The User shall be free to publish the results of the research using the Data for the approved purpose. The User agrees to acknowledge in any such publication that the research makes use of Data generated by the Data Producer. 11. The User and the User Institution(s) agree to destroy any Data held, once it is no longer used for the indicated project described in this application form unless obligated to retain the data set for archival purposes in conformity with national audits or legal requirements. 12. The User and the User Institution(s) will notify the Data Access Committee as soon as they become aware of a breach of the terms or conditions of this agreement. 13. The User and the User Institution(s) agree that they will submit a final report to the Data Access Committee sixty (60) days on completion of the agreed purpose. The Data Access Committee agrees to treat the report and all information, data, results, and conclusions contained within such report as confidential information belonging to the User Institution. 14. If requested, the User and the User Institution(s) will allow data security and management documentation and corresponding physical installations to be inspected to verify that they are complying with the terms of this Data Access Agreement. 15. This Agreement shall be effective as of the date of the last party to sign below (“Effective Date”) and shall terminate three (3) years after the Effective Date, unless terminated sooner pursuant to Section 16 below. 16. The User and the User Institution(s) accept that this agreement may terminate immediately upon any breach of this agreement from the User and the User Institution(s). Either Party may terminate this Agreement upon thirty (30) days written notice for any reason. 17. In case of section 15 or 16 the User and the User Institution(s) will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User and the User Institution(s) from retaining the data set for archival purpose in conformity with national audits or legal requirements. 18. The following Sections of this Agreement shall survive its expiration or termination: Sections 1-11, 13-15, 19. 19. The User and the User Institution(s) agree to distribute a copy of this agreement and explain its content to any person mentioned in this application form. 20. This agreement shall be construed, interpreted and governed by the laws of Finland and shall be subject to the non-exclusive jurisdiction of the Finnish courts. For and on behalf of University of Helsinki _____________________________________________________ Signature of Institutional or Administrative Authority Print name ___________________________ Date ___________________________ Stamp For University of Helsinki, Department of Cancer Genetics _________________________________________________ Signature Print Name ___________________________ Date ___________________________ Stamp For and on behalf of User: Name of Applicant(s): ___________________________ ___________________________ ___________________________ ___________________________ Signature of Applicant(s): ___________________________ ___________________________ ___________________________ ___________________________ Date: ___________________________ For and on behalf of User Institution: Signature of Institutional or Administrative Authority: ___________________________ Print name: ___________________________ User Institution: ___________________________ Date: ___________________________ STAMP:

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002019451 vcf 4.8 MB
EGAF00002019452 vcf 4.4 MB
EGAF00002019453 vcf 10.6 MB
EGAF00002019454 vcf 7.7 MB
EGAF00002019455 vcf 242.4 MB
EGAF00002019456 vcf 2.7 MB
EGAF00002019457 vcf 6.0 MB
EGAF00002019458 vcf 3.8 MB
EGAF00002019459 vcf 7.4 MB
EGAF00002019460 vcf 6.3 MB
EGAF00002019461 vcf 2.9 MB
EGAF00002019462 vcf 8.7 MB
EGAF00002019463 vcf 2.2 MB
EGAF00002019464 vcf 57.5 MB
EGAF00002019465 vcf 5.1 MB
EGAF00002019466 vcf 52.7 MB
EGAF00002019467 vcf 5.3 MB
EGAF00002019468 vcf 6.6 MB
EGAF00002019469 vcf 6.0 MB
EGAF00002019470 vcf 4.9 MB
EGAF00002019471 vcf 5.3 MB
EGAF00002019472 vcf 8.5 MB
EGAF00002019473 vcf 6.8 MB
EGAF00002019474 vcf 6.1 MB
EGAF00002019475 vcf 5.5 MB
EGAF00002019476 vcf 4.6 MB
EGAF00002019477 vcf 5.5 MB
EGAF00002019478 vcf 5.6 MB
EGAF00002019479 vcf 5.1 MB
EGAF00002019480 vcf 5.6 MB
EGAF00002019481 vcf 4.0 MB
EGAF00002019482 vcf 4.6 MB
EGAF00002019483 vcf 5.6 MB
EGAF00002019484 vcf 3.9 MB
EGAF00002019485 vcf 9.3 MB
EGAF00002019486 vcf 8.5 MB
EGAF00002019487 vcf 7.3 MB
EGAF00002019488 vcf 9.4 MB
EGAF00002019489 vcf 6.0 MB
EGAF00002019490 vcf 4.5 MB
EGAF00002019491 vcf 3.7 MB
EGAF00002019492 vcf 5.5 MB
EGAF00002019493 vcf 6.9 MB
EGAF00002019494 vcf 7.1 MB
EGAF00002019495 vcf 6.8 MB
EGAF00002019496 vcf 6.7 MB
EGAF00002019497 vcf 4.0 MB
EGAF00002019498 vcf 4.5 MB
EGAF00002019499 vcf 4.8 MB
EGAF00002019500 vcf 6.2 MB
EGAF00002019501 vcf 6.7 MB
EGAF00002019502 vcf 6.0 MB
EGAF00002019503 vcf 5.6 MB
EGAF00002019504 vcf 6.6 MB
EGAF00002019505 vcf 5.6 MB
EGAF00002019506 vcf 4.5 MB
EGAF00002019507 vcf 6.7 MB
EGAF00002019508 vcf 571.5 MB
EGAF00002019509 vcf 2.1 MB
EGAF00002019510 vcf 10.7 MB
EGAF00002019511 vcf 7.9 MB
EGAF00002019512 vcf 5.2 MB
EGAF00002019513 vcf 1.8 MB
EGAF00002019514 vcf 9.8 MB
EGAF00002019515 vcf 5.5 MB
EGAF00002019516 vcf 6.2 MB
EGAF00002019517 vcf 2.4 MB
EGAF00002019518 vcf 71.1 MB
EGAF00002019519 vcf 8.6 MB
EGAF00002019520 vcf 4.6 MB
EGAF00002019521 vcf 6.6 MB
EGAF00002019522 vcf 6.4 MB
EGAF00002019523 vcf 4.0 MB
EGAF00002019524 vcf 4.9 MB
EGAF00002019525 vcf 5.1 MB
EGAF00002019526 vcf 2.3 MB
EGAF00002019527 vcf 5.4 MB
EGAF00002019528 vcf 5.5 MB
EGAF00002019529 vcf 7.3 MB
EGAF00002019530 vcf 1.5 MB
EGAF00002019531 vcf 4.9 MB
EGAF00002019532 vcf 1.8 MB
EGAF00002019533 vcf 5.7 MB
EGAF00002019534 vcf 8.1 MB
EGAF00002019535 vcf 2.7 MB
EGAF00002019536 vcf 1.8 MB
EGAF00002019537 vcf 1.7 MB
EGAF00002019538 vcf 2.3 MB
EGAF00002019539 vcf 10.0 MB
EGAF00002019540 vcf 7.9 MB
EGAF00002019541 vcf 5.7 MB
EGAF00002019542 vcf 5.3 MB
EGAF00002019543 vcf 5.4 MB
EGAF00002019544 vcf 5.2 MB
EGAF00002019545 vcf 5.4 MB
EGAF00002019546 vcf 5.0 MB
EGAF00002019547 vcf 4.8 MB
EGAF00002019548 vcf 8.0 MB
EGAF00002019549 vcf 5.3 MB
EGAF00002019550 vcf 498.7 MB
EGAF00002019551 vcf 6.2 MB
EGAF00002019552 vcf 4.6 MB
EGAF00002019553 vcf 6.0 MB
EGAF00002019554 vcf 7.2 MB
EGAF00002019555 vcf 8.5 MB
EGAF00002019556 vcf 5.3 MB
EGAF00002019557 vcf 4.5 MB
EGAF00002019558 vcf 6.0 MB
EGAF00002019559 vcf 30.4 MB
EGAF00002019560 vcf 6.2 MB
EGAF00002019561 vcf 8.1 MB
EGAF00002019562 vcf 4.2 MB
EGAF00002019563 vcf 77.7 MB
EGAF00002019564 vcf 7.3 MB
EGAF00002019565 vcf 7.3 MB
EGAF00002019566 vcf 59.5 MB
EGAF00002019567 vcf 6.2 MB
EGAF00002019568 vcf 55.1 MB
EGAF00002019569 vcf 5.4 MB
EGAF00002019570 vcf 6.5 MB
EGAF00002019571 vcf 3.5 MB
EGAF00002019572 vcf 4.6 MB
EGAF00002019573 vcf 7.3 MB
EGAF00002019574 vcf 7.9 MB
EGAF00002019575 vcf 100.3 MB
EGAF00002019576 vcf 28.4 MB
EGAF00002019577 vcf 6.5 MB
EGAF00002019578 vcf 9.5 MB
EGAF00002019579 vcf 4.4 MB
EGAF00002019580 vcf 7.3 MB
EGAF00002019581 vcf 4.8 MB
EGAF00002019582 vcf 7.4 MB
EGAF00002019583 vcf 4.3 MB
EGAF00002019584 vcf 5.1 MB
EGAF00002019585 vcf 5.9 MB
EGAF00002019586 vcf 7.6 MB
EGAF00002019587 vcf 4.0 MB
EGAF00002019588 vcf 5.5 MB
EGAF00002019589 vcf 9.9 MB
EGAF00002019590 vcf 2.2 MB
EGAF00002019591 vcf 2.5 MB
EGAF00002019592 vcf 60.7 MB
EGAF00002019593 vcf 79.3 MB
EGAF00002019594 vcf 5.5 MB
EGAF00002019595 vcf 5.4 MB
EGAF00002019596 vcf 9.9 MB
EGAF00002019597 vcf 8.8 MB
EGAF00002019598 vcf 6.6 MB
EGAF00002019599 vcf 3.9 MB
EGAF00002019600 vcf 7.5 MB
EGAF00002019601 vcf 6.2 MB
EGAF00002019602 vcf 4.2 MB
EGAF00002019603 vcf 2.8 MB
EGAF00002019604 vcf 3.3 MB
EGAF00002019605 vcf 6.7 MB
EGAF00002019606 vcf 2.4 MB
EGAF00002019607 vcf 2.5 MB
EGAF00002019608 vcf 4.5 MB
EGAF00002019609 vcf 5.1 MB
EGAF00002019610 vcf 8.7 MB
EGAF00002019611 vcf 16.5 MB
EGAF00002019612 vcf 8.0 MB
EGAF00002019613 vcf 5.5 MB
EGAF00002019614 vcf 6.1 MB
EGAF00002019615 vcf 7.6 MB
EGAF00002019616 vcf 2.8 MB
EGAF00002019617 vcf 2.8 MB
EGAF00002019618 vcf 8.1 MB
EGAF00002019619 vcf 7.2 MB
EGAF00002019620 vcf 5.5 MB
EGAF00002019621 vcf 6.4 MB
EGAF00002019622 vcf 5.8 MB
EGAF00002019623 vcf 1.3 MB
EGAF00002019624 vcf 6.2 MB
EGAF00002019625 vcf 1.5 MB
EGAF00002019626 vcf 5.4 MB
EGAF00002019627 vcf 1.6 MB
EGAF00002019628 vcf 5.6 MB
EGAF00002019629 vcf 5.7 MB
EGAF00002019630 vcf 5.4 MB
EGAF00002019631 vcf 2.5 MB
EGAF00002019632 vcf 10.3 MB
EGAF00002019633 vcf 7.1 MB
EGAF00002019634 vcf 5.2 MB
EGAF00002019635 vcf 7.1 MB
EGAF00002019636 vcf 6.0 MB
EGAF00002019637 vcf 7.9 MB
EGAF00002019638 vcf 8.7 MB
EGAF00002019639 vcf 6.0 MB
EGAF00002019640 vcf 6.4 MB
EGAF00002019641 vcf 4.4 MB
EGAF00002019642 vcf 4.9 MB
EGAF00002019643 vcf 6.5 MB
EGAF00002019644 vcf 3.9 MB
EGAF00002019645 vcf 4.7 MB
EGAF00002019646 vcf 6.0 MB
EGAF00002019647 vcf 3.6 MB
EGAF00002019648 vcf 4.5 MB
EGAF00002019649 vcf 3.2 MB
EGAF00002019650 vcf 7.0 MB
EGAF00002019652 vcf 46.0 MB
EGAF00002019653 vcf 6.2 MB
EGAF00002019654 vcf 5.0 MB
EGAF00002019656 vcf 49.4 MB
EGAF00002019657 vcf 7.6 MB
EGAF00002019658 vcf 4.3 MB
EGAF00002019659 vcf 5.9 MB
EGAF00002019660 vcf 5.6 MB
EGAF00002019661 vcf 62.4 MB
EGAF00002019662 vcf 7.7 MB
EGAF00002019663 vcf 6.5 MB
EGAF00002019664 vcf 8.7 MB
EGAF00002019665 vcf 49.0 MB
EGAF00002019666 vcf 5.5 MB
EGAF00002019667 vcf 6.3 MB
EGAF00002019668 vcf 4.0 MB
EGAF00002019669 vcf 7.6 MB
EGAF00002019670 vcf 7.5 MB
EGAF00002019671 vcf 6.0 MB
EGAF00002019672 vcf 4.7 MB
EGAF00002019673 vcf 7.3 MB
EGAF00002019674 vcf 4.7 MB
EGAF00002019675 vcf 2.0 MB
EGAF00002019676 vcf 6.9 MB
EGAF00002019677 vcf 6.6 MB
EGAF00002019678 vcf 48.1 MB
EGAF00002019679 vcf 8.2 MB
EGAF00002019680 vcf 3.4 MB
EGAF00002019681 vcf 6.9 MB
EGAF00002019682 vcf 8.6 MB
EGAF00002019683 vcf 9.4 MB
EGAF00002019684 vcf 5.1 MB
EGAF00002019685 vcf 3.7 MB
EGAF00002019686 vcf 4.4 MB
EGAF00002019687 vcf 7.1 MB
EGAF00002019688 vcf 8.0 MB
EGAF00002019689 vcf 4.0 MB
EGAF00002019690 vcf 4.6 MB
EGAF00002019691 vcf 5.0 MB
EGAF00002019692 vcf 4.7 MB
EGAF00002019693 vcf 8.0 MB
EGAF00002019694 vcf 6.7 MB
EGAF00002019695 vcf 3.9 MB
EGAF00002019696 vcf 6.2 MB
EGAF00002019697 vcf 9.3 MB
EGAF00002019698 vcf 5.8 MB
EGAF00002019699 vcf 50.4 MB
EGAF00002019700 vcf 39.6 MB
EGAF00002019701 vcf 3.3 MB
EGAF00002019702 vcf 470.5 kB
EGAF00002019703 vcf 76.2 MB
EGAF00002019704 vcf 6.5 MB
EGAF00002019705 vcf 6.8 MB
EGAF00002019706 vcf 6.5 MB
254 Files (3.7 GB)