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Whole genome sequencing files for St. Jude Clinical Pilot

This dataset contains whole genome sequencing BAM files for 78 tumor-normal pairs (a total of 156 samples) used in the St. Jude Clinical Pilot. Mapping was performed using BWA. This dataset accompanies the paper "Clinical Cancer Genomic Profiling by Three-Platform Sequencing of Whole Genome, Whole Exome and Transcriptome"

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DAC to obtain datasets submitted by St. Jude Children's Research Hospital - Washington University Pediatric Cancer Genome Project

This document refers to a data set, which has been submitted to the European Genome Archive (EGA) for the restricted access by legitimate academic institutions that have agreed to comply with the terms of a Data Access Agreement drafted by the St. Jude Children's Research Hospital - Washington University Pediatric Cancer Genome Project Steering Committee. There are a number of steps that a researcher must take to obtain access to this data and the process is overseen by our Data Access Committee, called the St. Jude Children's Research Hospital - Washington University Pediatric Cancer Genome Project Steering Committee. For an overview of the guidelines and information concerning data access, such as general principles, application procedure, and assessment criteria, please visit http://explore.pediatriccancergenomeproject.org/dataAccess/GuidelinesAndInformation.pdf. For the data access agreement or an application, please visit http://explore.pediatriccancergenomeproject.org/dataAccess/ApplicationForm.pdf. For all other inquiries, please email PCGP_data_request@stjude.org. We can confirm that this submission is consistent with the informed consent of the participants of the study or has been granted ethical approval and is in accordance with the applicable laws and regulations.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002058937 bam 85.3 GB
EGAF00002058938 bam 106.8 GB
EGAF00002058939 bam 102.3 GB
EGAF00002058940 bam 69.4 GB
EGAF00002058941 bam 104.3 GB
EGAF00002058942 bam 116.0 GB
EGAF00002058943 bam 107.2 GB
EGAF00002058944 bam 74.1 GB
EGAF00002058945 bam 108.5 GB
EGAF00002058946 bam 114.6 GB
EGAF00002058947 bam 106.6 GB
EGAF00002058948 bam 86.5 GB
EGAF00002058949 bam 106.6 GB
EGAF00002058950 bam 118.7 GB
EGAF00002058951 bam 105.3 GB
EGAF00002058952 bam 109.0 GB
EGAF00002058953 bam 86.6 GB
EGAF00002058954 bam 104.4 GB
EGAF00002058955 bam 117.6 GB
EGAF00002058956 bam 98.1 GB
EGAF00002058957 bam 114.4 GB
EGAF00002058958 bam 92.6 GB
EGAF00002058959 bam 155.5 GB
EGAF00002058960 bam 122.6 GB
EGAF00002058961 bam 129.4 GB
EGAF00002058962 bam 94.0 GB
EGAF00002058963 bam 102.2 GB
EGAF00002058964 bam 102.6 GB
EGAF00002058965 bam 109.9 GB
EGAF00002058966 bam 81.8 GB
EGAF00002058967 bam 93.7 GB
EGAF00002058968 bam 107.1 GB
EGAF00002058969 bam 121.6 GB
EGAF00002058970 bam 129.8 GB
EGAF00002058971 bam 117.7 GB
EGAF00002058972 bam 114.3 GB
EGAF00002058973 bam 116.1 GB
EGAF00002058974 bam 102.1 GB
EGAF00002058975 bam 167.8 GB
EGAF00002058976 bam 93.3 GB
EGAF00002058977 bam 102.3 GB
EGAF00002058978 bam 104.3 GB
EGAF00002058979 bam 95.2 GB
EGAF00002058980 bam 86.9 GB
EGAF00002058981 bam 86.2 GB
EGAF00002058982 bam 108.8 GB
EGAF00002058983 bam 127.0 GB
EGAF00002058984 bam 84.6 GB
EGAF00002058985 bam 113.6 GB
EGAF00002058986 bam 115.3 GB
EGAF00002058987 bam 114.1 GB
EGAF00002058988 bam 115.4 GB
EGAF00002058989 bam 106.5 GB
EGAF00002058990 bam 102.6 GB
EGAF00002058991 bam 82.7 GB
EGAF00002058992 bam 99.6 GB
EGAF00002058994 bam 97.2 GB
EGAF00002058995 bam 129.1 GB
EGAF00002058996 bam 55.7 GB
EGAF00002058997 bam 93.6 GB
EGAF00002058998 bam 90.5 GB
EGAF00002058999 bam 122.3 GB
EGAF00002059000 bam 123.7 GB
EGAF00002059001 bam 123.7 GB
EGAF00002059002 bam 89.9 GB
EGAF00002059003 bam 104.5 GB
EGAF00002059004 bam 123.3 GB
EGAF00002059005 bam 60.4 GB
EGAF00002059006 bam 71.4 GB
EGAF00002059007 bam 83.0 GB
EGAF00002059008 bam 90.1 GB
EGAF00002059009 bam 100.8 GB
EGAF00002059010 bam 95.3 GB
EGAF00002059011 bam 113.3 GB
EGAF00002059012 bam 126.4 GB
EGAF00002059013 bam 106.2 GB
EGAF00002059014 bam 110.8 GB
EGAF00002059015 bam 66.4 GB
EGAF00002059016 bam 52.3 GB
EGAF00002059017 bam 113.8 GB
EGAF00002059018 bam 117.2 GB
EGAF00002059019 bam 93.4 GB
EGAF00002059020 bam 92.1 GB
EGAF00002059021 bam 90.5 GB
EGAF00002059022 bam 97.4 GB
EGAF00002059023 bam 106.4 GB
EGAF00002059024 bam 104.9 GB
EGAF00002059025 bam 182.4 GB
EGAF00002059026 bam 159.7 GB
EGAF00002059027 bam 149.9 GB
EGAF00002059028 bam 104.6 GB
EGAF00002059029 bam 103.6 GB
EGAF00002059030 bam 85.7 GB
EGAF00002059031 bam 111.9 GB
EGAF00002059032 bam 115.6 GB
EGAF00002059033 bam 92.3 GB
EGAF00002059034 bam 95.4 GB
EGAF00002059035 bam 90.8 GB
EGAF00002059036 bam 81.7 GB
EGAF00002059037 bam 95.4 GB
EGAF00002059038 bam 81.7 GB
EGAF00002059039 bam 97.3 GB
EGAF00002059040 bam 103.1 GB
EGAF00002059041 bam 114.7 GB
EGAF00002059042 bam 101.5 GB
EGAF00002059043 bam 156.5 GB
EGAF00002059044 bam 112.7 GB
EGAF00002059045 bam 112.2 GB
EGAF00002059046 bam 102.5 GB
EGAF00002059047 bam 106.6 GB
EGAF00002059048 bam 105.7 GB
EGAF00002059049 bam 72.9 GB
EGAF00002059050 bam 103.3 GB
EGAF00002059051 bam 155.3 GB
EGAF00002059052 bam 160.4 GB
EGAF00002059053 bam 102.9 GB
EGAF00002059054 bam 112.1 GB
EGAF00002059055 bam 100.3 GB
EGAF00002059056 bam 111.6 GB
EGAF00002059057 bam 112.2 GB
EGAF00002059058 bam 193.2 GB
EGAF00002059059 bam 151.1 GB
EGAF00002059060 bam 163.1 GB
EGAF00002059061 bam 184.9 GB
EGAF00002059062 bam 128.1 GB
EGAF00002059063 bam 166.1 GB
EGAF00002059064 bam 182.2 GB
EGAF00002059065 bam 86.7 GB
EGAF00002059066 bam 120.3 GB
EGAF00002059067 bam 93.6 GB
EGAF00002059068 bam 89.5 GB
EGAF00002059069 bam 94.1 GB
EGAF00002059070 bam 102.7 GB
EGAF00002059071 bam 110.2 GB
EGAF00002059072 bam 85.0 GB
EGAF00002059073 bam 116.1 GB
EGAF00002059074 bam 109.8 GB
EGAF00002059075 bam 80.5 GB
EGAF00002059076 bam 103.2 GB
EGAF00002059077 bam 94.2 GB
EGAF00002059078 bam 101.5 GB
EGAF00002059079 bam 175.7 GB
EGAF00002059080 bam 173.2 GB
EGAF00002059081 bam 196.6 GB
EGAF00002059082 bam 175.9 GB
EGAF00002059083 bam 180.9 GB
EGAF00002059084 bam 170.6 GB
EGAF00002059085 bam 193.0 GB
EGAF00002059086 bam 167.4 GB
EGAF00002059087 bam 192.8 GB
EGAF00002059088 bam 158.3 GB
EGAF00002059089 bam 105.4 GB
EGAF00002059090 bam 123.1 GB
EGAF00002059091 bam 77.2 GB
EGAF00002059092 bam 99.8 GB
155 Files (17.4 TB)