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Whole exome sequencing files for St. Jude Clinical Pilot

This dataset contains whole exome sequencing BAM files for 78 tumor-normal pairs (a total of 156 samples) used in the St. Jude Clinical Pilot. Mapping was performed using BWA. This dataset accompanies the paper "Clinical Cancer Genomic Profiling by Three-Platform Sequencing of Whole Genome, Whole Exome and Transcriptome"

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DAC to obtain datasets submitted by St. Jude Children's Research Hospital - Washington University Pediatric Cancer Genome Project

This document refers to a data set, which has been submitted to the European Genome Archive (EGA) for the restricted access by legitimate academic institutions that have agreed to comply with the terms of a Data Access Agreement drafted by the St. Jude Children's Research Hospital - Washington University Pediatric Cancer Genome Project Steering Committee. There are a number of steps that a researcher must take to obtain access to this data and the process is overseen by our Data Access Committee, called the St. Jude Children's Research Hospital - Washington University Pediatric Cancer Genome Project Steering Committee. For an overview of the guidelines and information concerning data access, such as general principles, application procedure, and assessment criteria, please visit http://explore.pediatriccancergenomeproject.org/dataAccess/GuidelinesAndInformation.pdf. For the data access agreement or an application, please visit http://explore.pediatriccancergenomeproject.org/dataAccess/ApplicationForm.pdf. For all other inquiries, please email PCGP_data_request@stjude.org. We can confirm that this submission is consistent with the informed consent of the participants of the study or has been granted ethical approval and is in accordance with the applicable laws and regulations.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001002217 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002059093 bam 7.0 GB
EGAF00002059094 bam 10.9 GB
EGAF00002059095 bam 13.4 GB
EGAF00002059096 bam 14.7 GB
EGAF00002059097 bam 14.9 GB
EGAF00002059098 bam 10.4 GB
EGAF00002059099 bam 12.3 GB
EGAF00002059100 bam 17.1 GB
EGAF00002059102 bam 11.9 GB
EGAF00002059103 bam 13.8 GB
EGAF00002059104 bam 21.4 GB
EGAF00002059105 bam 11.6 GB
EGAF00002059106 bam 12.8 GB
EGAF00002059107 bam 8.5 GB
EGAF00002059108 bam 10.2 GB
EGAF00002059109 bam 9.6 GB
EGAF00002059110 bam 7.4 GB
EGAF00002059111 bam 11.6 GB
EGAF00002059112 bam 11.5 GB
EGAF00002059113 bam 9.9 GB
EGAF00002059114 bam 11.2 GB
EGAF00002059115 bam 8.0 GB
EGAF00002059116 bam 12.8 GB
EGAF00002059117 bam 15.1 GB
EGAF00002059118 bam 9.4 GB
EGAF00002059119 bam 12.0 GB
EGAF00002059120 bam 14.2 GB
EGAF00002059121 bam 11.5 GB
EGAF00002059122 bam 11.4 GB
EGAF00002059123 bam 18.7 GB
EGAF00002059124 bam 17.5 GB
EGAF00002059125 bam 9.4 GB
EGAF00002059126 bam 12.2 GB
EGAF00002059127 bam 10.3 GB
EGAF00002059128 bam 10.7 GB
EGAF00002059129 bam 8.1 GB
EGAF00002059130 bam 6.9 GB
EGAF00002059131 bam 8.5 GB
EGAF00002059132 bam 5.6 GB
EGAF00002059133 bam 20.2 GB
EGAF00002059134 bam 21.4 GB
EGAF00002059135 bam 14.5 GB
EGAF00002059136 bam 11.3 GB
EGAF00002059137 bam 14.3 GB
EGAF00002059138 bam 8.9 GB
EGAF00002059139 bam 14.4 GB
EGAF00002059140 bam 15.8 GB
EGAF00002059141 bam 18.1 GB
EGAF00002059142 bam 34.8 GB
EGAF00002059143 bam 14.5 GB
EGAF00002059144 bam 11.7 GB
EGAF00002059145 bam 12.0 GB
EGAF00002059146 bam 11.9 GB
EGAF00002059147 bam 14.0 GB
EGAF00002059148 bam 10.2 GB
EGAF00002059149 bam 10.7 GB
EGAF00002059150 bam 9.6 GB
EGAF00002059151 bam 12.5 GB
EGAF00002059152 bam 21.8 GB
EGAF00002059153 bam 8.9 GB
EGAF00002059154 bam 6.4 GB
EGAF00002059155 bam 13.6 GB
EGAF00002059156 bam 11.2 GB
EGAF00002059157 bam 6.1 GB
EGAF00002059158 bam 14.3 GB
EGAF00002059159 bam 22.2 GB
EGAF00002059160 bam 17.1 GB
EGAF00002059161 bam 13.9 GB
EGAF00002059162 bam 12.1 GB
EGAF00002059163 bam 11.9 GB
EGAF00002059164 bam 9.9 GB
EGAF00002059165 bam 23.4 GB
EGAF00002059166 bam 21.2 GB
EGAF00002059167 bam 13.1 GB
EGAF00002059168 bam 10.4 GB
EGAF00002059169 bam 11.5 GB
EGAF00002059170 bam 11.4 GB
EGAF00002059171 bam 35.0 GB
EGAF00002059172 bam 15.8 GB
EGAF00002059173 bam 18.9 GB
EGAF00002059174 bam 37.4 GB
EGAF00002059175 bam 16.7 GB
EGAF00002059176 bam 11.3 GB
EGAF00002059177 bam 10.4 GB
EGAF00002059178 bam 12.2 GB
EGAF00002059179 bam 12.4 GB
EGAF00002059180 bam 16.1 GB
EGAF00002059181 bam 8.8 GB
EGAF00002059182 bam 11.0 GB
EGAF00002059183 bam 14.6 GB
EGAF00002059184 bam 11.5 GB
EGAF00002059185 bam 15.1 GB
EGAF00002059186 bam 9.8 GB
EGAF00002059187 bam 20.0 GB
EGAF00002059188 bam 12.2 GB
EGAF00002059189 bam 26.8 GB
EGAF00002059190 bam 9.1 GB
EGAF00002059191 bam 25.2 GB
EGAF00002059192 bam 8.7 GB
EGAF00002059193 bam 27.2 GB
EGAF00002059194 bam 11.3 GB
EGAF00002059195 bam 35.8 GB
EGAF00002059196 bam 7.9 GB
EGAF00002059197 bam 15.5 GB
EGAF00002059198 bam 15.5 GB
EGAF00002059199 bam 11.8 GB
EGAF00002059200 bam 13.9 GB
EGAF00002059201 bam 15.3 GB
EGAF00002059202 bam 15.1 GB
EGAF00002059203 bam 13.1 GB
EGAF00002059204 bam 17.2 GB
EGAF00002059205 bam 11.7 GB
EGAF00002059206 bam 8.0 GB
EGAF00002059207 bam 11.6 GB
EGAF00002059208 bam 8.3 GB
EGAF00002059209 bam 11.4 GB
EGAF00002059210 bam 6.9 GB
EGAF00002059211 bam 18.4 GB
EGAF00002059212 bam 38.5 GB
EGAF00002059213 bam 11.6 GB
EGAF00002059214 bam 9.8 GB
EGAF00002059215 bam 18.6 GB
EGAF00002059216 bam 9.3 GB
EGAF00002059217 bam 7.2 GB
EGAF00002059218 bam 14.3 GB
EGAF00002059219 bam 13.8 GB
EGAF00002059220 bam 12.0 GB
EGAF00002059221 bam 8.3 GB
EGAF00002059222 bam 7.2 GB
EGAF00002059223 bam 7.4 GB
EGAF00002059224 bam 13.2 GB
EGAF00002059225 bam 5.9 GB
EGAF00002059226 bam 10.9 GB
EGAF00002059227 bam 14.9 GB
EGAF00002059228 bam 16.9 GB
EGAF00002059229 bam 14.0 GB
EGAF00002059230 bam 22.7 GB
EGAF00002059231 bam 14.2 GB
EGAF00002059232 bam 16.9 GB
EGAF00002059233 bam 18.5 GB
EGAF00002059234 bam 19.7 GB
EGAF00002059235 bam 12.3 GB
EGAF00002059236 bam 14.4 GB
EGAF00002059237 bam 19.7 GB
EGAF00002059238 bam 8.9 GB
EGAF00002059239 bam 11.6 GB
EGAF00002059240 bam 13.4 GB
EGAF00002059241 bam 21.5 GB
EGAF00002059242 bam 7.2 GB
EGAF00002059243 bam 15.8 GB
EGAF00002059244 bam 38.7 GB
EGAF00002059245 bam 8.0 GB
EGAF00002059246 bam 6.3 GB
EGAF00002059247 bam 7.3 GB
EGAF00002059248 bam 6.5 GB
155 Files (2.1 TB)