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RNA-Seq files for St. Jude Clinical Pilot

This dataset contains whole genome sequencing BAM files for 78 tumor-normal pairs (a total of 156 samples) used in the St. Jude Clinical Pilot. Mapping was performed using BWA. This dataset accompanies the paper "Clinical Cancer Genomic Profiling by Three-Platform Sequencing of Whole Genome, Whole Exome and Transcriptome"

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DAC to obtain datasets submitted by St. Jude Children's Research Hospital - Washington University Pediatric Cancer Genome Project

This document refers to a data set, which has been submitted to the European Genome Archive (EGA) for the restricted access by legitimate academic institutions that have agreed to comply with the terms of a Data Access Agreement drafted by the St. Jude Children's Research Hospital - Washington University Pediatric Cancer Genome Project Steering Committee. There are a number of steps that a researcher must take to obtain access to this data and the process is overseen by our Data Access Committee, called the St. Jude Children's Research Hospital - Washington University Pediatric Cancer Genome Project Steering Committee. For an overview of the guidelines and information concerning data access, such as general principles, application procedure, and assessment criteria, please visit http://explore.pediatriccancergenomeproject.org/dataAccess/GuidelinesAndInformation.pdf. For the data access agreement or an application, please visit http://explore.pediatriccancergenomeproject.org/dataAccess/ApplicationForm.pdf. For all other inquiries, please email PCGP_data_request@stjude.org. We can confirm that this submission is consistent with the informed consent of the participants of the study or has been granted ethical approval and is in accordance with the applicable laws and regulations.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001002217 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002057677 bam 5.4 GB
EGAF00002057678 bam 7.5 GB
EGAF00002057679 bam 5.7 GB
EGAF00002057680 bam 5.8 GB
EGAF00002057682 bam 11.2 GB
EGAF00002057683 bam 2.8 GB
EGAF00002057684 bam 7.1 GB
EGAF00002057685 bam 10.1 GB
EGAF00002057686 bam 6.3 GB
EGAF00002057687 bam 4.0 GB
EGAF00002057688 bam 4.0 GB
EGAF00002057689 bam 5.6 GB
EGAF00002057690 bam 6.8 GB
EGAF00002057691 bam 5.9 GB
EGAF00002057692 bam 6.1 GB
EGAF00002057693 bam 8.5 GB
EGAF00002057694 bam 5.6 GB
EGAF00002057695 bam 7.2 GB
EGAF00002057696 bam 6.8 GB
EGAF00002057697 bam 10.8 GB
EGAF00002057698 bam 6.4 GB
EGAF00002057699 bam 7.9 GB
EGAF00002057700 bam 8.4 GB
EGAF00002057701 bam 5.0 GB
EGAF00002057702 bam 10.1 GB
EGAF00002057703 bam 6.5 GB
EGAF00002057704 bam 8.4 GB
EGAF00002057705 bam 6.0 GB
EGAF00002057706 bam 11.2 GB
EGAF00002057707 bam 5.2 GB
EGAF00002057708 bam 6.4 GB
EGAF00002057709 bam 9.5 GB
EGAF00002057710 bam 5.1 GB
EGAF00002057711 bam 11.6 GB
EGAF00002057712 bam 13.7 GB
EGAF00002057713 bam 8.3 GB
EGAF00002057714 bam 5.9 GB
EGAF00002057715 bam 7.9 GB
EGAF00002057716 bam 8.4 GB
EGAF00002057717 bam 4.5 GB
EGAF00002057718 bam 6.2 GB
EGAF00002057719 bam 8.1 GB
EGAF00002057720 bam 9.0 GB
EGAF00002057721 bam 7.7 GB
EGAF00002057722 bam 5.6 GB
EGAF00002057723 bam 7.7 GB
EGAF00002057724 bam 42.9 GB
EGAF00002057725 bam 45.6 GB
EGAF00002057726 bam 9.0 GB
EGAF00002057727 bam 8.0 GB
EGAF00002057728 bam 9.6 GB
EGAF00002057729 bam 5.6 GB
EGAF00002057730 bam 6.9 GB
EGAF00002057731 bam 11.3 GB
EGAF00002057732 bam 12.5 GB
EGAF00002057733 bam 4.6 GB
EGAF00002057734 bam 5.9 GB
EGAF00002057735 bam 6.3 GB
EGAF00002057736 bam 5.8 GB
EGAF00002057737 bam 7.3 GB
EGAF00002057738 bam 5.3 GB
EGAF00002057739 bam 14.7 GB
EGAF00002057740 bam 14.1 GB
EGAF00002057741 bam 9.4 GB
EGAF00002057742 bam 7.0 GB
EGAF00002057743 bam 10.2 GB
EGAF00002057744 bam 7.9 GB
EGAF00002057745 bam 12.1 GB
EGAF00002057746 bam 7.4 GB
EGAF00002057747 bam 8.9 GB
EGAF00002057748 bam 9.8 GB
EGAF00002057749 bam 7.3 GB
EGAF00002057750 bam 6.3 GB
EGAF00002057751 bam 5.5 GB
EGAF00002057752 bam 4.6 GB
EGAF00002057753 bam 5.2 GB
EGAF00002057754 bam 5.6 GB
77 Files (656.8 GB)