RNA sequencing of high hyperdiploid and ETV6/RUNX1-positive pediatric acute lymphoblastic leukemia
RNA-sequencing data of pediatric B-cell precursor acute lymphoblastic leukemia, including 18 high hyperdiploid cases and 9 ETV6/RUNX1-positive cases. Sequencing libraries were constructed using the Human Ribo-Zero rRNA Removal Kit (Illumina, San Diego, CA) and sequenced on an Illumina NextSeq 500. RNA sequencing data were processed using the TCGA mRNA-seq pipeline (https://docs.gdc.cancer.gov/Data/Bioinformatics_Pipelines/Expression_mRNA_Pipeline/#mrna-analysis-pipeline).
- 27 samples
- DAC: EGAC00001000950
- Technology: NextSeq 500
- HMB DUO:0000006 (version: 2019-01-07)health or medical or biomedical researchThis data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.
- NPUNCU DUO:0000018 (version: 2019-01-07)not for profit, non commercial use onlyThis data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.
Access to individual-level genotype data is available by application to the High hyperdiploid ALL sequencing data Data Access Commitee
DATA ACCESS AGREEMENT between Lund University, P. O. Box 117, SE-221 00 Lund, Sweden, (hereinafter referred to as the “University”); and [name], [address], (hereinafter referred to as the “Recipient”); each a ‘Party’ and together the ‘Parties’. This agreement (the “Agreement”) is made on the last day of signature here below (the “Agreement Date”). BACKGROUND (A) The University’s Department of clinical genetics is the owner of human genetic data relating to the research article by Yang et al. entitled “Transcriptional dysregulation and changes in chromatin architecture in high hyperdiploid childhood acute lymphoblastic leukemia” and submitted to Nature Genetics, for which the University has received approval from the Regional Ethics Committee (Regionala Etikprövningsnämnden) under the permission number Dnr 2011/289. (B) Pursuant to the request by the Recipient, the University has agreed to make the Data available to it for research purposes. 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Recipient further agrees to not attempt to identify the Data Subjects, redistribute the Data, or any subset or derivative of the Data, that could be used to identify the Data Subject, or in any other way compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 3.2 Where required under applicable laws regulating cross-border transfers of Personal Data, including European data protection laws, the parties, or their affiliates, will execute any further agreements or undertakings required to enable the lawful transfer of Personal Data, including where appropriate the EU standard contractual clauses for transfers of Personal Data to non-EU data processors set out in European Commission Decision 2010/87/EC of 5 February 2010 available at: http://eurlex.europa.eu/LexUriServ/LexUriServ.do?uri=OJ:L:2010:039:0005:0018:EN:PDF or such standard contractual clauses as are then in force. 3.3 The Recipient agrees that it shall take all reasonable security precautions to keep the Data confidential, such precautions to be no less onerous than those applied in respect of the Recipient’s own confidential information. 4 Errors The Recipient agrees to notify the University of any errors detected in the Data. 5 Ownership of the Data 5.1 The Data and all intellectual property in them shall at all times remain the property of the University. 5.2 The Recipient and its Users shall have the right to develop Intellectual Property based on comparisons with their own data. 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In this event, the University or its appointed agent will contact Recipient to inform Recipient of any changes and Recipient agrees that Recipient’s continued use of the Data shall be dependent on the parties entering into a new version of the Agreement. 10.3 The Recipient may not assign or transfer all or any of its rights or obligations under this Agreement without the prior written consent of the University. 10.4 This Agreement is subject to Swedish substantive law. 10.5 Any dispute, controversy or claim arising out of or in connection with this Agreement, or the breach, termination or invalidity thereof, shall be solved by Swedish courts. This Agreement has been drawn up in two (2) original copies, each Party receiving one duly signed copy thereof. Signed …………………………….. Signed ……………………………… Authorised signature for and on behalf of Lund University Authorised signature for and on behalf of Recipient [please fill in the name of recipient] Name Name Position Position Dated Dated For the User (s):I acknowledge that I have read and understand the terms of this Agreement Signed ……………………………… Name Position Dated
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
Study ID | Study Title | Study Type |
---|---|---|
EGAS00001003079 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
ID | File Type | Size | Located in | |
---|---|---|---|---|
EGAF00002041518 | bam | 6.9 GB | ||
EGAF00002041519 | bam | 4.5 GB | ||
EGAF00002041520 | bam | 7.9 GB | ||
EGAF00002041521 | bam | 10.5 GB | ||
EGAF00002041522 | bam | 6.5 GB | ||
EGAF00002041523 | bam | 12.0 GB | ||
EGAF00002041524 | bam | 11.4 GB | ||
EGAF00002041525 | bam | 8.2 GB | ||
EGAF00002041526 | bam | 16.7 GB | ||
EGAF00002041527 | bam | 9.0 GB | ||
EGAF00002041528 | bam | 5.4 GB | ||
EGAF00002041529 | bam | 7.2 GB | ||
EGAF00002041530 | bam | 9.0 GB | ||
EGAF00002041531 | bam | 10.2 GB | ||
EGAF00002041532 | bam | 8.7 GB | ||
EGAF00002041533 | bam | 7.0 GB | ||
EGAF00002041534 | bam | 9.5 GB | ||
EGAF00002041535 | bam | 8.6 GB | ||
EGAF00002041536 | bam | 14.8 GB | ||
EGAF00002041537 | bam | 5.9 GB | ||
EGAF00002041538 | bam | 11.8 GB | ||
EGAF00002041539 | bam | 10.0 GB | ||
EGAF00002041541 | bam | 17.4 GB | ||
EGAF00002041542 | bam | 6.5 GB | ||
EGAF00002041543 | bam | 8.2 GB | ||
EGAF00002041544 | bam | 9.5 GB | ||
EGAF00002051881 | bam | 6.8 GB | ||
27 Files (250.3 GB) |