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Whole exome and transcriptome sequencing of gastric cancer patients

Whole exome and RNA-seq of matched normal gastric mucosa (n=34) and gastric cancer tissues (n=34) from gastric cancer patients (n=34)

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Agreement for accessing data of NGS based ctDNA tests

Data Access Agreement I. DEFINITIONS AND INTERPRETATIONS 1) “Data producers” refer to “Geneseeq Technology Inc.” 2) “User Institution” refers to institution requesting data access. 3) “Authorized Personnel” refers to individuals in the User Institution that are granted data access, including principle investigators who submit the application and other registered users in Appendix I. II. TERMS AND CONDITIONS 1) The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix I) and only for Research Purposes. Description of research projects (Appendix I) need to be submitted and reviewed by Data Access Committee (DCA) before data access. 2) Minimum protection measures are required for file access. Unencrypted data files can be held on a secured institutional compute system. It is suggested to set password logins and screenlocks for the data storage computers. For data transportation with USB or other portable hard drives, the data must be encrypted. 3) The User Institution agrees to preserve, at all times, the confidentiality of these Data. It is required to take all reasonable care to limit the possibility of identifying Research Participants in any research papers or publications. 4) The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorized Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 5) The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 6) The User Institution agrees to follow the Fort Lauderdale Guidelines (https://wellcome.ac.uk/sites/default/files/wtd003207_0.pdf) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognizing the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 7) The User Institution agrees to follow the Publication Policy in Appendix II. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analyzing these Data. 8) The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 9) The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 10) The User Institution will notify Geneseeq Technology Inc. within 30 days of any changes or departures of Authorized Personnel. 11) The User Institution will notify Geneseeq Technology Inc. prior to any significant changes to the protocol for the Project. 12) The User Institution will notify Geneseeq Technology Inc. as soon as it becomes aware of a breach of the terms or conditions of this agreement. 13) Geneseeq Technology Inc. may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. In the event that changes are required, the Data Producers will inform the User Institution of the changes and the User Institution may elect to accept the changes or terminate the agreement. 14) If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. APPENDIX I – APPLICANT INFORMATION 1. Name of User Institute 2. Project name 3. Project description and research aims 4. Information of principle investigator* 1) Name: 2) Position: 3) Institutional email address: 4) Phone Number: 5) Full postal address: 6) Registered users in this project (Include the information of all students and research staff who will have access to the data for the project): a. Name of Registered User b. Institutional Email c. Job Title *Co-investigators or collaborators in other Institutions must submit a separate data access application. APPENDIX II – PUBLICATION POLICY Data producers intend to publish the results of their analysis of this dataset and do not consider its deposition into public databases to be the equivalent of such publications. Data producers anticipate that the dataset could be useful to other qualified researchers for a variety of purposes. However, some areas of work are subject to a publication moratorium. The publication moratorium covers any publications (including oral communications) that describe the use of the dataset. For research papers, submission for publication should not occur until 24 months after these data were first made available on the relevant hosting database, unless Data producers has provided written consent to earlier submission. In any publications based on these data, please describe how the data can be accessed, including the name of the hosting database (e.g., The European Genome-phenome Archive at the European Bioinformatics Institute) and its accession numbers (e.g., EGAS00000000029), and acknowledge its use in a form agreed by the User Institution with Data producers.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00002031172 fastq.gz 3.5 GB
EGAF00002031173 fastq.gz 4.3 GB
EGAF00002031174 fastq.gz 2.9 GB
EGAF00002031175 fastq.gz 3.5 GB
EGAF00002031176 fastq.gz 2.8 GB
EGAF00002031177 fastq.gz 3.3 GB
EGAF00002031178 fastq.gz 3.1 GB
EGAF00002031179 fastq.gz 3.7 GB
EGAF00002031180 fastq.gz 2.8 GB
EGAF00002031181 fastq.gz 3.3 GB
EGAF00002031182 fastq.gz 3.1 GB
EGAF00002031183 fastq.gz 3.6 GB
EGAF00002031184 fastq.gz 3.1 GB
EGAF00002031185 fastq.gz 3.6 GB
EGAF00002031186 fastq.gz 3.2 GB
EGAF00002031187 fastq.gz 3.8 GB
EGAF00002031188 fastq.gz 3.0 GB
EGAF00002031189 fastq.gz 3.4 GB
EGAF00002031190 fastq.gz 2.9 GB
EGAF00002031191 fastq.gz 3.4 GB
EGAF00002031192 fastq.gz 3.4 GB
EGAF00002031193 fastq.gz 3.9 GB
EGAF00002031194 fastq.gz 2.8 GB
EGAF00002031195 fastq.gz 3.4 GB
EGAF00002031196 fastq.gz 2.9 GB
EGAF00002031197 fastq.gz 3.4 GB
EGAF00002031198 fastq.gz 2.7 GB
EGAF00002031199 fastq.gz 3.1 GB
EGAF00002031200 fastq.gz 2.9 GB
EGAF00002031201 fastq.gz 3.5 GB
EGAF00002031202 fastq.gz 2.4 GB
EGAF00002031203 fastq.gz 2.7 GB
EGAF00002031204 fastq.gz 3.0 GB
EGAF00002031205 fastq.gz 3.5 GB
EGAF00002031206 fastq.gz 2.6 GB
EGAF00002031207 fastq.gz 3.1 GB
EGAF00002031208 fastq.gz 2.3 GB
EGAF00002031209 fastq.gz 2.6 GB
EGAF00002031210 fastq.gz 2.9 GB
EGAF00002031211 fastq.gz 3.4 GB
EGAF00002031212 fastq.gz 2.7 GB
EGAF00002031213 fastq.gz 3.2 GB
EGAF00002031214 fastq.gz 2.8 GB
EGAF00002031215 fastq.gz 3.3 GB
EGAF00002031216 fastq.gz 2.7 GB
EGAF00002031217 fastq.gz 3.1 GB
EGAF00002031218 fastq.gz 2.9 GB
EGAF00002031219 fastq.gz 3.4 GB
EGAF00002031220 fastq.gz 2.8 GB
EGAF00002031221 fastq.gz 3.3 GB
EGAF00002031222 fastq.gz 2.9 GB
EGAF00002031223 fastq.gz 3.4 GB
EGAF00002031224 fastq.gz 2.5 GB
EGAF00002031225 fastq.gz 2.9 GB
EGAF00002031226 fastq.gz 2.9 GB
EGAF00002031227 fastq.gz 3.5 GB
EGAF00002031228 fastq.gz 3.3 GB
EGAF00002031229 fastq.gz 3.8 GB
EGAF00002031230 fastq.gz 3.3 GB
EGAF00002031231 fastq.gz 3.8 GB
EGAF00002031232 fastq.gz 3.3 GB
EGAF00002031233 fastq.gz 3.8 GB
EGAF00002031234 fastq.gz 3.3 GB
EGAF00002031235 fastq.gz 4.0 GB
EGAF00002031236 fastq.gz 3.3 GB
EGAF00002031237 fastq.gz 3.8 GB
EGAF00002031238 fastq.gz 3.7 GB
EGAF00002031239 fastq.gz 4.3 GB
EGAF00002031240 fastq.gz 2.8 GB
EGAF00002031241 fastq.gz 3.3 GB
EGAF00002031242 fastq.gz 2.9 GB
EGAF00002031243 fastq.gz 3.4 GB
EGAF00002031244 fastq.gz 7.2 GB
EGAF00002031245 fastq.gz 8.2 GB
EGAF00002031246 fastq.gz 2.8 GB
EGAF00002031247 fastq.gz 3.2 GB
EGAF00002031248 fastq.gz 6.7 GB
EGAF00002031249 fastq.gz 7.8 GB
EGAF00002031250 fastq.gz 2.8 GB
EGAF00002031251 fastq.gz 3.2 GB
EGAF00002031252 fastq.gz 7.6 GB
EGAF00002031253 fastq.gz 8.8 GB
EGAF00002031254 fastq.gz 2.9 GB
EGAF00002031255 fastq.gz 3.4 GB
EGAF00002031256 fastq.gz 6.7 GB
EGAF00002031257 fastq.gz 7.7 GB
EGAF00002031258 fastq.gz 2.7 GB
EGAF00002031259 fastq.gz 3.1 GB
EGAF00002031260 fastq.gz 7.7 GB
EGAF00002031261 fastq.gz 9.0 GB
EGAF00002031262 fastq.gz 2.9 GB
EGAF00002031263 fastq.gz 3.3 GB
EGAF00002031264 fastq.gz 8.1 GB
EGAF00002031265 fastq.gz 9.5 GB
EGAF00002031266 fastq.gz 2.9 GB
EGAF00002031267 fastq.gz 3.4 GB
EGAF00002031268 fastq.gz 8.0 GB
EGAF00002031269 fastq.gz 9.5 GB
EGAF00002031270 fastq.gz 2.9 GB
EGAF00002031271 fastq.gz 3.3 GB
EGAF00002031272 fastq.gz 6.9 GB
EGAF00002031273 fastq.gz 8.0 GB
EGAF00002031274 fastq.gz 10.4 GB
EGAF00002031275 fastq.gz 12.2 GB
EGAF00002031276 fastq.gz 4.3 GB
EGAF00002031277 fastq.gz 5.1 GB
EGAF00002031278 fastq.gz 6.9 GB
EGAF00002031279 fastq.gz 7.9 GB
EGAF00002031280 fastq.gz 3.6 GB
EGAF00002031281 fastq.gz 4.2 GB
EGAF00002031282 fastq.gz 6.9 GB
EGAF00002031283 fastq.gz 8.0 GB
EGAF00002031284 fastq.gz 3.6 GB
EGAF00002031285 fastq.gz 4.2 GB
EGAF00002031286 fastq.gz 9.2 GB
EGAF00002031287 fastq.gz 10.7 GB
EGAF00002031288 fastq.gz 3.0 GB
EGAF00002031289 fastq.gz 3.6 GB
EGAF00002031290 fastq.gz 6.1 GB
EGAF00002031291 fastq.gz 7.0 GB
EGAF00002031292 fastq.gz 3.9 GB
EGAF00002031293 fastq.gz 4.5 GB
EGAF00002031294 fastq.gz 6.7 GB
EGAF00002031295 fastq.gz 7.8 GB
EGAF00002031296 fastq.gz 2.6 GB
EGAF00002031297 fastq.gz 3.0 GB
EGAF00002031298 fastq.gz 7.2 GB
EGAF00002031299 fastq.gz 8.3 GB
EGAF00002031300 fastq.gz 2.8 GB
EGAF00002031301 fastq.gz 3.3 GB
EGAF00002031302 fastq.gz 7.1 GB
EGAF00002031303 fastq.gz 8.2 GB
EGAF00002031304 fastq.gz 3.3 GB
EGAF00002031305 fastq.gz 3.9 GB
EGAF00002031306 fastq.gz 6.4 GB
EGAF00002031307 fastq.gz 7.4 GB
EGAF00002031308 fastq.gz 2.5 GB
EGAF00002031309 fastq.gz 3.0 GB
EGAF00002031310 fastq.gz 7.2 GB
EGAF00002031311 fastq.gz 8.4 GB
EGAF00002031312 fastq.gz 2.9 GB
EGAF00002031313 fastq.gz 3.4 GB
EGAF00002031314 fastq.gz 10.9 GB
EGAF00002031315 fastq.gz 12.8 GB
EGAF00002031316 fastq.gz 3.8 GB
EGAF00002031317 fastq.gz 4.5 GB
EGAF00002031318 fastq.gz 7.4 GB
EGAF00002031319 fastq.gz 8.7 GB
EGAF00002031320 fastq.gz 2.9 GB
EGAF00002031321 fastq.gz 3.4 GB
EGAF00002031322 fastq.gz 7.6 GB
EGAF00002031323 fastq.gz 8.8 GB
EGAF00002031324 fastq.gz 2.8 GB
EGAF00002031325 fastq.gz 3.3 GB
EGAF00002031326 fastq.gz 7.5 GB
EGAF00002031327 fastq.gz 8.7 GB
EGAF00002031328 fastq.gz 3.3 GB
EGAF00002031329 fastq.gz 3.9 GB
EGAF00002031330 fastq.gz 9.1 GB
EGAF00002031331 fastq.gz 10.6 GB
EGAF00002031332 fastq.gz 3.3 GB
EGAF00002031333 fastq.gz 3.9 GB
EGAF00002031334 fastq.gz 9.7 GB
EGAF00002031335 fastq.gz 11.3 GB
EGAF00002031336 fastq.gz 3.1 GB
EGAF00002031337 fastq.gz 3.6 GB
EGAF00002031338 fastq.gz 14.1 GB
EGAF00002031339 fastq.gz 17.3 GB
EGAF00002031340 fastq.gz 2.6 GB
EGAF00002031341 fastq.gz 3.0 GB
EGAF00002031342 fastq.gz 8.5 GB
EGAF00002031343 fastq.gz 9.9 GB
EGAF00002031344 fastq.gz 2.9 GB
EGAF00002031345 fastq.gz 3.5 GB
EGAF00002031346 fastq.gz 8.5 GB
EGAF00002031347 fastq.gz 10.0 GB
EGAF00002031348 fastq.gz 3.0 GB
EGAF00002031349 fastq.gz 3.5 GB
EGAF00002031350 fastq.gz 8.2 GB
EGAF00002031351 fastq.gz 9.6 GB
EGAF00002031352 fastq.gz 3.6 GB
EGAF00002031353 fastq.gz 4.3 GB
EGAF00002031354 fastq.gz 9.0 GB
EGAF00002031355 fastq.gz 10.4 GB
EGAF00002031356 fastq.gz 2.9 GB
EGAF00002031357 fastq.gz 3.4 GB
EGAF00002031358 fastq.gz 8.4 GB
EGAF00002031359 fastq.gz 9.8 GB
EGAF00002031360 fastq.gz 3.5 GB
EGAF00002031361 fastq.gz 4.1 GB
EGAF00002031362 fastq.gz 8.8 GB
EGAF00002031363 fastq.gz 10.2 GB
EGAF00002031364 fastq.gz 2.6 GB
EGAF00002031365 fastq.gz 3.1 GB
EGAF00002031366 fastq.gz 11.1 GB
EGAF00002031367 fastq.gz 13.4 GB
EGAF00002031368 fastq.gz 3.1 GB
EGAF00002031369 fastq.gz 3.6 GB
EGAF00002031370 fastq.gz 10.3 GB
EGAF00002031371 fastq.gz 12.0 GB
EGAF00002031372 fastq.gz 2.8 GB
EGAF00002031373 fastq.gz 3.3 GB
EGAF00002031374 fastq.gz 7.2 GB
EGAF00002031375 fastq.gz 8.3 GB
EGAF00002031376 fastq.gz 2.7 GB
EGAF00002031377 fastq.gz 3.2 GB
EGAF00002031378 fastq.gz 2.9 GB
EGAF00002031379 fastq.gz 3.5 GB
EGAF00002031380 fastq.gz 3.2 GB
EGAF00002031381 fastq.gz 3.7 GB
EGAF00002031382 fastq.gz 3.0 GB
EGAF00002031383 fastq.gz 3.6 GB
EGAF00002031384 fastq.gz 3.1 GB
EGAF00002031385 fastq.gz 3.7 GB
EGAF00002031386 fastq.gz 2.6 GB
EGAF00002031387 fastq.gz 3.0 GB
EGAF00002031388 fastq.gz 1.9 GB
EGAF00002031389 fastq.gz 2.3 GB
EGAF00002031390 fastq.gz 2.9 GB
EGAF00002031391 fastq.gz 3.4 GB
EGAF00002031392 fastq.gz 1.3 GB
EGAF00002031393 fastq.gz 1.5 GB
EGAF00002031394 fastq.gz 2.4 GB
EGAF00002031395 fastq.gz 2.7 GB
EGAF00002031396 fastq.gz 3.2 GB
EGAF00002031397 fastq.gz 3.8 GB
EGAF00002031398 fastq.gz 3.9 GB
EGAF00002031399 fastq.gz 4.7 GB
EGAF00002031400 fastq.gz 3.1 GB
EGAF00002031401 fastq.gz 3.7 GB
EGAF00002031402 fastq.gz 3.1 GB
EGAF00002031403 fastq.gz 3.7 GB
EGAF00002031404 fastq.gz 3.4 GB
EGAF00002031405 fastq.gz 4.0 GB
EGAF00002031406 fastq.gz 3.5 GB
EGAF00002031407 fastq.gz 4.1 GB
EGAF00002031408 fastq.gz 3.1 GB
EGAF00002031409 fastq.gz 3.6 GB
EGAF00002031410 fastq.gz 3.4 GB
EGAF00002031411 fastq.gz 3.9 GB
EGAF00002031412 fastq.gz 4.0 GB
EGAF00002031413 fastq.gz 4.6 GB
EGAF00002031414 fastq.gz 4.0 GB
EGAF00002031415 fastq.gz 4.6 GB
EGAF00002031416 fastq.gz 2.7 GB
EGAF00002031417 fastq.gz 3.1 GB
EGAF00002031418 fastq.gz 3.6 GB
EGAF00002031419 fastq.gz 4.1 GB
EGAF00002031420 fastq.gz 3.2 GB
EGAF00002031421 fastq.gz 3.7 GB
EGAF00002031422 fastq.gz 3.0 GB
EGAF00002031423 fastq.gz 3.5 GB
EGAF00002031424 fastq.gz 3.1 GB
EGAF00002031425 fastq.gz 3.6 GB
EGAF00002031426 fastq.gz 2.7 GB
EGAF00002031427 fastq.gz 3.1 GB
EGAF00002031428 fastq.gz 3.4 GB
EGAF00002031429 fastq.gz 3.9 GB
EGAF00002031430 fastq.gz 1.3 GB
EGAF00002031431 fastq.gz 1.5 GB
EGAF00002031432 fastq.gz 1.5 GB
EGAF00002031433 fastq.gz 1.7 GB
EGAF00002031434 fastq.gz 3.1 GB
EGAF00002031435 fastq.gz 3.5 GB
EGAF00002031436 fastq.gz 3.2 GB
EGAF00002031437 fastq.gz 3.7 GB
EGAF00002031438 fastq.gz 2.9 GB
EGAF00002031439 fastq.gz 3.4 GB
EGAF00002031440 fastq.gz 3.3 GB
EGAF00002031441 fastq.gz 3.8 GB
EGAF00002031442 fastq.gz 2.7 GB
EGAF00002031443 fastq.gz 3.1 GB
272 Files (1.3 TB)