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Cancer gene panel (T200.1) sequencing analysis of adult type ovarian granulosa cell tumors (Validation cohort from Hillman, et al)

Cancer gene panel (T200.1) sequencing data from tumor/normal pairs for adult type ovarian granulosa cell tumor sequencing project. This data set contains 55 tumor panel sequencing data and 44 matched normal panel sequencing data generated using the MD Anderson Cancer Center T200.1 cancer gene hybrid capture platform, with sequencing performed on an Illumina HiSeq 2000. This dataset contains BAM files generated by aligning paired-end reads to the hg19 reference genome.

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UNIVERSITY OF TEXAS MD ANDERSON CANCER CENTER DEPARTMENT OF GENOMIC MEDICINE - DATA ACCESS AGREEMENT

This agreement discloses the conditions under which any human genomic, proteomic, and immune profiling Data generated by the University of Texas Department of Genomic Medicine is to be accessed from public databases such as dbGAP and EGA. By signing this agreement, you, the User and Associates (collaborators, staff scientists, and trainees) agree to abide by the terms and conditions of data access set out in this agreement. Terms and Conditions: 1. The Data is to be used for research only including analyses of somatic, germline, structural variants, differential expression patterns, and immune infiltrates. 2. The Data is to be stored in an appropriate password-protected computational infrastructure monitored by your institutional information technology group. 3. You, as the User, are a laboratory head, principal investigator and take responsibility for the distribution, use, storage, and management of the Data in question. 4. You, the User and any collaborators, staff scientists, and trainees are to be co-signees of an IRB-protocol for the use of this data. The IRB protocol number should be referenced in the Materials Transfers Agreement. 5. The Materials Transfers Agreement should also state the purpose and goal of the Data usage. 6. You may use the Data for research that could result in intellectual property or commercial product. 7. Confidentiality of Data Subjects will be preserved by you the User and Associates. 8. The accession number of the study under which the Data is received should be incorporated and referenced appropriately in any publication that results from use of the Data. 9. Any breach of this agreement will result in termination and immediate permanent deletion of Data. The Data is subject to international laws.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00001997718 bam 6.8 GB
EGAF00001997719 bam 7.7 GB
EGAF00001997720 bam 7.6 GB
EGAF00001997721 bam 4.7 GB
EGAF00001997722 bam 4.9 GB
EGAF00001997723 bam 9.9 GB
EGAF00001997724 bam 6.0 GB
EGAF00001997725 bam 6.6 GB
EGAF00001997726 bam 8.3 GB
EGAF00001997727 bam 8.1 GB
EGAF00001997728 bam 6.6 GB
EGAF00001997729 bam 8.3 GB
EGAF00001997730 bam 7.0 GB
EGAF00001997731 bam 7.8 GB
EGAF00001997732 bam 7.8 GB
EGAF00001997733 bam 8.5 GB
EGAF00001997734 bam 6.0 GB
EGAF00001997735 bam 6.8 GB
EGAF00001997736 bam 7.4 GB
EGAF00001997737 bam 7.1 GB
EGAF00001997738 bam 6.9 GB
EGAF00001997739 bam 5.9 GB
EGAF00001997740 bam 7.1 GB
EGAF00001997741 bam 8.0 GB
EGAF00001997742 bam 7.7 GB
EGAF00001997743 bam 8.4 GB
EGAF00001997744 bam 7.7 GB
EGAF00001997745 bam 6.8 GB
EGAF00001997746 bam 7.4 GB
EGAF00001997747 bam 7.6 GB
EGAF00001997748 bam 7.8 GB
EGAF00001997749 bam 7.0 GB
EGAF00001997750 bam 7.0 GB
EGAF00001997751 bam 6.0 GB
EGAF00001997752 bam 7.3 GB
EGAF00001997753 bam 5.8 GB
EGAF00001997754 bam 9.0 GB
EGAF00001997755 bam 8.9 GB
EGAF00001997756 bam 7.3 GB
EGAF00001997757 bam 8.0 GB
EGAF00001997758 bam 8.2 GB
EGAF00001997759 bam 7.5 GB
EGAF00001997760 bam 7.6 GB
EGAF00001997761 bam 7.2 GB
EGAF00001997762 bam 7.1 GB
EGAF00001997763 bam 7.4 GB
EGAF00001997764 bam 7.5 GB
EGAF00001997765 bam 5.6 GB
EGAF00001997766 bam 6.9 GB
EGAF00001997767 bam 7.4 GB
EGAF00001997768 bam 6.5 GB
EGAF00001997769 bam 6.9 GB
EGAF00001997770 bam 6.5 GB
EGAF00001997771 bam 8.0 GB
EGAF00001997772 bam 4.3 GB
EGAF00001997773 bam 4.2 GB
EGAF00001997774 bam 8.0 GB
EGAF00001997775 bam 4.5 GB
EGAF00001997776 bam 6.8 GB
EGAF00001997777 bam 8.2 GB
EGAF00001997778 bam 8.2 GB
EGAF00001997779 bam 7.0 GB
EGAF00001997780 bam 6.9 GB
EGAF00001997781 bam 7.1 GB
EGAF00001997782 bam 7.7 GB
EGAF00001997783 bam 7.6 GB
EGAF00001997784 bam 8.0 GB
EGAF00001997785 bam 6.9 GB
EGAF00001997786 bam 7.8 GB
EGAF00001997787 bam 5.6 GB
EGAF00001997788 bam 8.5 GB
EGAF00001997789 bam 7.3 GB
EGAF00001997790 bam 7.3 GB
EGAF00001997791 bam 7.6 GB
EGAF00001997792 bam 7.9 GB
EGAF00001997793 bam 7.5 GB
EGAF00001997794 bam 7.2 GB
EGAF00001997795 bam 6.4 GB
EGAF00001997796 bam 8.3 GB
EGAF00001997797 bam 7.2 GB
EGAF00001997798 bam 4.5 GB
EGAF00001997799 bam 4.1 GB
EGAF00001997800 bam 6.3 GB
EGAF00001997801 bam 7.7 GB
EGAF00001997802 bam 7.4 GB
EGAF00001997803 bam 7.3 GB
EGAF00001997804 bam 7.1 GB
EGAF00001997805 bam 7.8 GB
EGAF00001997806 bam 7.3 GB
EGAF00001997807 bam 6.1 GB
EGAF00001997808 bam 6.5 GB
EGAF00001997809 bam 7.7 GB
EGAF00001997810 bam 6.5 GB
EGAF00001997811 bam 6.7 GB
EGAF00001997812 bam 6.0 GB
EGAF00001997813 bam 8.4 GB
EGAF00001997814 bam 6.2 GB
EGAF00001997815 bam 7.9 GB
EGAF00001997816 bam 7.7 GB
99 Files (704.8 GB)