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Low-coverage Whole Genome Sequencing, Colorectal adenomas, NKI-AvL TGO series Stool-Proteomics

For this tissue dataset, we applied low-pass whole genome sequencing to 98 non-advanced and advanced adenomas. As small number of lesions was sequenced multiple times, this dataset consists of 103 fastq files. These adenomas were classified as lesions with low-risk or high-risk of progression, according to the presence of specific DNA copy number changes (Carvalho et al, CancerPrevRes, 2018).

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Data Access Policy of NKI-AvL TGO

Data Access Policy of NKI-AvL TGO To request access to this specific dataset, and in order to comply with local and (inter)national regulations, please follow the steps described below: 1. Please fill in the information requested on the website: ega.nki.nl 2. Once you’ve submitted this information, the Data Access Committee (DAC) and the NKI-AVL Internal Review Board (IRB) will review your planned study and its goals and judge whether it is competing with our interests. The DAC and IRB can approve or decline your request or request a modification. 3. Upon approval by the IRB, you will receive a Data Transfer Agreement (DTA) that needs to be filled in and signed by the legal representative of your institute / company. 4. Upon acceptance of a signed DTA by our Knowledge Transfer & Contracting Office (KT&C), your party will receive a copy signed by our legal representative, and you will need to submit your access request via the EGA website

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00001993546 fastq.gz 646.4 MB
EGAF00001993547 fastq.gz 349.6 MB
EGAF00001993548 fastq.gz 467.8 MB
EGAF00001993549 fastq.gz 642.5 MB
EGAF00001993550 fastq.gz 342.6 MB
EGAF00001993551 fastq.gz 490.8 MB
EGAF00001993552 fastq.gz 472.0 MB
EGAF00001993553 fastq.gz 591.5 MB
EGAF00001993554 fastq.gz 296.0 MB
EGAF00001993555 fastq.gz 281.5 MB
EGAF00001993556 fastq.gz 244.1 MB
EGAF00001993557 fastq.gz 339.5 MB
EGAF00001993558 fastq.gz 531.6 MB
EGAF00001993559 fastq.gz 155.8 MB
EGAF00001993560 fastq.gz 345.7 MB
EGAF00001993561 fastq.gz 117.8 MB
EGAF00001993562 fastq.gz 430.8 MB
EGAF00001993563 fastq.gz 260.9 MB
EGAF00001993564 fastq.gz 524.5 MB
EGAF00001993565 fastq.gz 422.1 MB
EGAF00001993566 fastq.gz 471.7 MB
EGAF00001993567 fastq.gz 212.3 MB
EGAF00001993568 fastq.gz 346.7 MB
EGAF00001993569 fastq.gz 451.3 MB
EGAF00001993570 fastq.gz 310.1 MB
EGAF00001993571 fastq.gz 286.8 MB
EGAF00001993572 fastq.gz 344.2 MB
EGAF00001993573 fastq.gz 360.7 MB
EGAF00001993574 fastq.gz 302.4 MB
EGAF00001993575 fastq.gz 385.2 MB
EGAF00001993576 fastq.gz 524.4 MB
EGAF00001993577 fastq.gz 305.6 MB
EGAF00001993578 fastq.gz 502.1 MB
EGAF00001993579 fastq.gz 257.1 MB
EGAF00001993580 fastq.gz 532.4 MB
EGAF00001993581 fastq.gz 592.8 MB
EGAF00001993582 fastq.gz 328.2 MB
EGAF00001993583 fastq.gz 326.7 MB
EGAF00001993584 fastq.gz 195.3 MB
EGAF00001993585 fastq.gz 335.7 MB
EGAF00001993586 fastq.gz 208.1 MB
EGAF00001993587 fastq.gz 394.5 MB
EGAF00001993588 fastq.gz 607.0 MB
EGAF00001993589 fastq.gz 249.0 MB
EGAF00001993590 fastq.gz 307.8 MB
EGAF00001993591 fastq.gz 255.5 MB
EGAF00001993592 fastq.gz 520.2 MB
EGAF00001993593 fastq.gz 206.0 MB
EGAF00001993594 fastq.gz 557.8 MB
EGAF00001993595 fastq.gz 193.5 MB
EGAF00001993596 fastq.gz 243.3 MB
EGAF00001993597 fastq.gz 280.8 MB
EGAF00001993598 fastq.gz 257.4 MB
EGAF00001993599 fastq.gz 441.0 MB
EGAF00001993600 fastq.gz 156.2 MB
EGAF00001993601 fastq.gz 337.2 MB
EGAF00001993602 fastq.gz 218.3 MB
EGAF00001993603 fastq.gz 273.4 MB
EGAF00001993604 fastq.gz 139.7 MB
EGAF00001993605 fastq.gz 410.2 MB
EGAF00001993606 fastq.gz 323.2 MB
EGAF00001993607 fastq.gz 392.6 MB
EGAF00001993608 fastq.gz 207.6 MB
EGAF00001993609 fastq.gz 235.4 MB
EGAF00001993610 fastq.gz 560.1 MB
EGAF00001993611 fastq.gz 637.5 MB
EGAF00001993612 fastq.gz 285.9 MB
EGAF00001993613 fastq.gz 269.6 MB
EGAF00001993614 fastq.gz 528.0 MB
EGAF00001993615 fastq.gz 281.8 MB
EGAF00001993616 fastq.gz 235.5 MB
EGAF00001993617 fastq.gz 264.8 MB
EGAF00001993618 fastq.gz 250.2 MB
EGAF00001993619 fastq.gz 486.2 MB
EGAF00001993620 fastq.gz 335.9 MB
EGAF00001993621 fastq.gz 352.9 MB
EGAF00001993622 fastq.gz 362.7 MB
EGAF00001993623 fastq.gz 295.5 MB
EGAF00001993624 fastq.gz 372.1 MB
EGAF00001993625 fastq.gz 427.6 MB
EGAF00001993626 fastq.gz 449.6 MB
EGAF00001993627 fastq.gz 176.9 MB
EGAF00001993628 fastq.gz 535.1 MB
EGAF00001993629 fastq.gz 294.5 MB
EGAF00001993630 fastq.gz 370.2 MB
EGAF00001993631 fastq.gz 307.3 MB
EGAF00001993632 fastq.gz 336.7 MB
EGAF00001993633 fastq.gz 292.7 MB
EGAF00001993634 fastq.gz 461.5 MB
EGAF00001993635 fastq.gz 262.3 MB
EGAF00001993636 fastq.gz 443.7 MB
EGAF00001993637 fastq.gz 410.5 MB
EGAF00001993638 fastq.gz 258.1 MB
EGAF00001993639 fastq.gz 591.6 MB
EGAF00001993640 fastq.gz 635.4 MB
EGAF00001993641 fastq.gz 542.1 MB
EGAF00001993642 fastq.gz 506.3 MB
EGAF00001993643 fastq.gz 584.6 MB
EGAF00001993644 fastq.gz 361.8 MB
EGAF00001993645 fastq.gz 489.9 MB
EGAF00001993646 fastq.gz 330.2 MB
EGAF00001993647 fastq.gz 155.1 MB
EGAF00001993648 fastq.gz 400.8 MB
103 Files (37.9 GB)