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HERBY trial WES

Whole exome sequencing of non-brainstem paediatric high grade glioma from the HERBY phase II randomised trial. DNA from 86 cases was subjected to Illumina paired end whole exome sequencing using a customised SureSelect Human All Exon V6 capture set. Germline DNA from whole blood was sequenced for 83 cases. 26 cases were sequenced from both fresh frozen tissue and FFPE material, 10 were sequenced from only fresh frozen material and 50 from only FFPE. Data is provided as bwa aligned BAM files

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ICR_pHGG_Data_Access_Policy

HUMAN GENETIC DATA ACCESS AGREEMENT FOR INSTITUTIONSBetween:(1) The Institute of Cancer Research: Royal Cancer Hospital of 123 Old Brompton Road, London SW7 3RP, UK (“ICR”); and(2) [ please insert the legal name and address of your institution ] (the “Recipient”).In response to the Recipient's request for access to the Data (as set out in Appendix A), ICR and the Recipient agree as follows:1Definitions1.1“ICR sequencing” shall mean the project undertaken by ICR to identify genetic sequence variants and mutations in paediatric High Grade Gliomas;1.2 “Data” shall mean all and any human genetic data obtained from ICR sequencing including the age, sex and tumour pathology of a Data Subject. Explicitly, Data does not include samples or biological materials;1.3 “Data Subject” shall mean the person (irrespective of state of health) to whom Data refers and who has been informed of the purpose for which the Data is held and has given his/her informed consent thereto;1.4 “Intellectual Property” means (i) patents, designs, trade marks and trade names (whether registered or unregistered), copyright and related rights, database rights, know-how and confidential information; (ii) all other intellectual property rights and similar or equivalent rights anywhere in the world which currently exist or are recognised in the future; and (iii) applications, extensions and renewals in relation to any such rights;1.5 “Registered User” shall mean a Researcher (or an individual conducting Research under the direct supervision of that Researcher) that is employed by the Recipient and is bound by confidentiality and non-use obligations in respect of Data and who has signed this Agreement and has received acknowledgement of its acceptance. For the avoidance of doubt, “Registered User” may also include students of the Recipient, visiting academics, contractors, sub-contractors or independent consultants provided that any such individual is bound by confidentiality and non-use obligations no less onerous then those binding the Recipient’s employees;1.6 “Research” shall mean research undertaken by the Recipient that seeks to advance the understanding and treatment of cancer and closely related diseases, and work on statistical methods that may be applied to such Research as set out in ;1.7“Researcher(s)” shall mean an individual or individuals carrying out Research who:(a) in the case of an individual seeking access to Data held solely under the control of ICR, has authored a relevant peer-reviewed article that ICR can locate on PubMed and who is still working in the field; or(b) in the case of an individual seeking access to Data held as part of a wider consortium, is a successful applicant to the consortium data access committee.2Purpose2.1The Recipient agrees to use Data only for Research.3 Confidentiality3.1 The Recipient agrees to preserve, at all times, the confidentiality of Data pertaining to identifiable Data Subjects. In particular, the Recipient undertakes not to use, or attempt to use the Data to deliberately compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. Recipient or Registered Users will not use Data either alone or in conjunction with any other information in any effort whatsoever to establish the individual identities of any Data Subject from whom Data were obtained.4 Data Protection4.1 The Recipient agrees that it, and its Registered Users, are covered by and shall comply with the obligations contained in the Data Protection Act 1998 as amended from time to time, or equivalent national provisions no less onerous then those contained in the Data Protection Act. In particular, the Recipient shall be responsible for ensuring that Registered Users understand and will comply with their duties under such legislation in relation to the handling, storage and use of Data and the rights of Data Subjects.4.2 The Recipient agrees that it, and its Registered Users, shall not analyse or make any use of the Data in such a way that has the potential to:(a) lead to the identification of any Data Subject; or(b) compromise the anonymity of any Data Subject in any way.5 Access and Governance5.1 The Recipient agrees that it shall take all reasonable security precautions to keep the Data confidential, such precautions to be no less onerous than those applied in respect of the Recipient’s own confidential information.5.2 The Recipient agrees to only give access to Data, in whole or part, or any material derived from the Data, to a Registered User. The Recipient agrees that before it gives any Registered User access to Data, it shall first show the Registered User a copy of this Agreement and shall inform the Registered User that he or she must comply with the obligations contained in this Agreement and sign up to the provisions of this Agreement in the form set out at the end of this Agreement. The Recipient shall provide ICR with a copy of the Registered User’s acceptance form within thirty (30) days of the date of acceptance by the Registered User.5.3 The Recipient agrees that it shall only give Registered Users that are not Researchers (including but not limited to students or new researchers to the field) access to the Data if they are supervised by a Researcher who will take responsibility for such Registered Users’ use of the Data.5.4 ICR reserves the right to request and inspect data security and management documentation to ensure the adequacy of data protection measures in countries that have no national laws comparable to that pertaining in the European Economic Area (EEA).6Errors6.1The Recipient agrees to notify the CGP of any errors detected in the Data.7Data reissue7.1 The Recipient accepts that Data will be reissued from time to time, with suitable versioning. If Data is reissued at the request of sample donors and/or as the result of other ethical scrutiny, the Recipient agrees to destroy all earlier versions of the Data.8Intellectual Property8.1The Recipient recognises that nothing in this Agreement shall operate to transfer to the Recipient or its Registered Users any Intellectual Property rights in or relating to the Data.8.2The Data shall at all times remain the property of ICR or of ICR’s designated assignee. Recipient shall retain title to any Intellectual Property made through the Recipient’s use of the Data, except to the extent such Intellectual property incorporates the Data.8.3 The Recipient and its Registered Users shall have the right to develop Intellectual Property based on comparisons with their own data.9Publications9.1 The Recipient agrees to acknowledge in any work based in whole or part on the Data, the published paper from which the Data derives, the version of the Data, and the role of the CGP and its funders in its distribution. The Recipient agrees to use the acknowledgement wording provided for the relevant Data in its publication. The Recipient will also declare in any such work that those who carried out the original analysis and collection of the Data bear no responsibility for the further analysis or interpretation of it by the Recipient.10Termination of Agreement10.1 This Agreement will terminate immediately upon any breach of the provisions of this Agreement by the Recipient or by the Recipient’s Registered Users.10.2The Recipient accepts that the changing ethical framework of human genetic research may lead to: (i) alteration to the provisions of this Agreement, in which case the Recipient may accept such alterations or terminate this Agreement; or (ii) the withdrawal of this Agreement in extreme circumstances.10.3 Either party shall have the right to terminate this Agreement with immediate effect upon giving written notice of termination to the other party.10.4 In the event that this Agreement is terminated in accordance with this Clause 10 the Recipient shall return or destroy all Data at the direction of ICR.11Costs11.1 The Recipient acknowledges that ICR shall incur costs in providing the Data to the Recipient, including but not limited to administrative costs and the cost of obtaining appropriate data storage devices. The Recipient agrees to pay, on the request of ICR, such reasonable costs as ICR may incur in providing the Data, within thirty (30) days of ICR making such a request for payment.12 Legal statement12.1The Recipient acknowledges that ICR and all other parties involved in the creation, funding or protection of the Data:(a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of the Data; and(b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of the Data, or from the unavailability of, or break in access to the Data for whatever reason.12.2 The Recipient understands that all the Data is protected by copyright and other intellectual property rights, such that duplication or sale of all of or part of the Data on any media is not permitted under any circumstances, except with the prior written consent of ICR.13 Governing Law13.1 This Agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this Agreement or its formation) shall be construed, interpreted and governed by the laws of England and Wales and shall be subject to the exclusive jurisdiction of the English courts. AGREED by the parties through their authorised signatoriesINSTITUTE OF CANCER RESEARCHAuthorised Signature:Name:Title:Date:RECIPIENT INSTITUTION:Recipient Name:Address:Telephone No:Email:Researcher Signature:Name:Title:Date:Registered User Signature:Name:Title:Date:Please send completed forms to:Chris Jones PhD FRCPathLeader, Glioma TeamDivisions of Molecular Pathology and Cancer TherapeuticsThe Institute of Cancer Research15 Cotswold Road, Sutton, Surrey SM2 5NG, UKTel: +44 (0)20 8722 4416 | Email: chris.jones@icr.ac.ukICR complies with the requirements of the Data Protection Act 1998 with regard to the collection, storage, processing and disclosure of personal information and is committed to upholding the Act's core Data Protection Principles. Information collected under the Agreement will be used for the purposes of maintaining the Agreement, and may be used for statistical reporting.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00001913360 bam 10.1 GB
EGAF00001913361 bam 4.6 GB
EGAF00001913362 bam 12.0 GB
EGAF00001913363 bam 4.7 GB
EGAF00001913364 bam 10.6 GB
EGAF00001913365 bam 14.5 GB
EGAF00001913366 bam 5.7 GB
EGAF00001913367 bam 7.0 GB
EGAF00001913368 bam 5.5 GB
EGAF00001913369 bam 7.0 GB
EGAF00001913370 bam 4.4 GB
EGAF00001913371 bam 12.7 GB
EGAF00001913372 bam 5.5 GB
EGAF00001913373 bam 9.4 GB
EGAF00001913374 bam 4.0 GB
EGAF00001913375 bam 8.6 GB
EGAF00001913376 bam 4.3 GB
EGAF00001913377 bam 12.2 GB
EGAF00001913378 bam 15.0 GB
EGAF00001913379 bam 10.5 GB
EGAF00001913380 bam 3.9 GB
EGAF00001913381 bam 7.6 GB
EGAF00001913382 bam 4.8 GB
EGAF00001913383 bam 10.8 GB
EGAF00001913384 bam 4.5 GB
EGAF00001913385 bam 10.6 GB
EGAF00001913386 bam 4.5 GB
EGAF00001913387 bam 10.9 GB
EGAF00001913388 bam 10.7 GB
EGAF00001913389 bam 4.7 GB
EGAF00001913390 bam 11.8 GB
EGAF00001913391 bam 4.8 GB
EGAF00001913392 bam 9.2 GB
EGAF00001913393 bam 4.5 GB
EGAF00001913394 bam 11.6 GB
EGAF00001913395 bam 4.4 GB
EGAF00001913396 bam 14.3 GB
EGAF00001913397 bam 12.3 GB
EGAF00001913398 bam 6.2 GB
EGAF00001913399 bam 15.2 GB
EGAF00001913400 bam 18.2 GB
EGAF00001913401 bam 5.5 GB
EGAF00001913402 bam 13.2 GB
EGAF00001913403 bam 5.8 GB
EGAF00001913404 bam 12.2 GB
EGAF00001913405 bam 5.4 GB
EGAF00001913406 bam 13.1 GB
EGAF00001913407 bam 5.3 GB
EGAF00001913408 bam 11.9 GB
EGAF00001913409 bam 5.4 GB
EGAF00001913410 bam 16.1 GB
EGAF00001913411 bam 6.1 GB
EGAF00001913412 bam 7.8 GB
EGAF00001913413 bam 14.6 GB
EGAF00001913414 bam 7.3 GB
EGAF00001913415 bam 12.2 GB
EGAF00001913416 bam 6.0 GB
EGAF00001913417 bam 4.6 GB
EGAF00001913418 bam 16.6 GB
EGAF00001913419 bam 10.8 GB
EGAF00001913420 bam 4.7 GB
EGAF00001913421 bam 11.0 GB
EGAF00001913422 bam 10.4 GB
EGAF00001913423 bam 3.8 GB
EGAF00001913424 bam 12.4 GB
EGAF00001913425 bam 4.4 GB
EGAF00001913426 bam 8.8 GB
EGAF00001913427 bam 12.3 GB
EGAF00001913428 bam 4.8 GB
EGAF00001913429 bam 11.0 GB
EGAF00001913430 bam 4.4 GB
EGAF00001913431 bam 13.5 GB
EGAF00001913432 bam 12.8 GB
EGAF00001913433 bam 4.9 GB
EGAF00001913434 bam 13.1 GB
EGAF00001913435 bam 12.9 GB
EGAF00001913436 bam 7.8 GB
EGAF00001913437 bam 19.7 GB
EGAF00001913438 bam 6.6 GB
EGAF00001913439 bam 10.5 GB
EGAF00001913440 bam 12.4 GB
EGAF00001913441 bam 4.7 GB
EGAF00001913442 bam 18.9 GB
EGAF00001913443 bam 5.8 GB
EGAF00001913444 bam 11.9 GB
EGAF00001913445 bam 5.6 GB
EGAF00001913446 bam 11.1 GB
EGAF00001913447 bam 4.0 GB
EGAF00001913448 bam 7.6 GB
EGAF00001913449 bam 4.4 GB
EGAF00001913450 bam 9.1 GB
EGAF00001913451 bam 4.6 GB
EGAF00001913452 bam 8.3 GB
EGAF00001913453 bam 4.2 GB
EGAF00001913454 bam 24.0 GB
EGAF00001913455 bam 5.3 GB
EGAF00001913456 bam 11.2 GB
EGAF00001913457 bam 5.1 GB
EGAF00001913458 bam 12.9 GB
EGAF00001913459 bam 10.7 GB
EGAF00001913460 bam 4.7 GB
EGAF00001913461 bam 13.6 GB
EGAF00001913462 bam 10.9 GB
EGAF00001913463 bam 4.7 GB
EGAF00001913464 bam 9.5 GB
EGAF00001913465 bam 11.9 GB
EGAF00001913466 bam 4.7 GB
EGAF00001913467 bam 7.0 GB
EGAF00001913468 bam 5.3 GB
EGAF00001913469 bam 10.6 GB
EGAF00001913470 bam 5.5 GB
EGAF00001913471 bam 10.9 GB
EGAF00001913472 bam 4.1 GB
EGAF00001913473 bam 10.3 GB
EGAF00001913474 bam 8.0 GB
EGAF00001913475 bam 12.3 GB
EGAF00001913476 bam 4.8 GB
EGAF00001913477 bam 9.1 GB
EGAF00001913478 bam 4.8 GB
EGAF00001913479 bam 17.5 GB
EGAF00001913480 bam 4.6 GB
EGAF00001913481 bam 15.8 GB
EGAF00001913482 bam 3.7 GB
EGAF00001913483 bam 9.0 GB
EGAF00001913484 bam 4.4 GB
EGAF00001913485 bam 8.7 GB
EGAF00001913486 bam 3.5 GB
EGAF00001913487 bam 8.0 GB
EGAF00001913488 bam 4.8 GB
EGAF00001913489 bam 10.4 GB
EGAF00001913490 bam 4.8 GB
EGAF00001913491 bam 6.6 GB
EGAF00001913492 bam 4.4 GB
EGAF00001913493 bam 8.4 GB
EGAF00001913494 bam 12.2 GB
EGAF00001913495 bam 5.2 GB
EGAF00001913496 bam 11.5 GB
EGAF00001913497 bam 3.5 GB
EGAF00001913498 bam 12.3 GB
EGAF00001913499 bam 4.9 GB
EGAF00001913500 bam 9.3 GB
EGAF00001913501 bam 12.7 GB
EGAF00001913502 bam 6.9 GB
EGAF00001913503 bam 9.9 GB
EGAF00001913504 bam 13.8 GB
EGAF00001913505 bam 5.5 GB
EGAF00001913506 bam 10.8 GB
EGAF00001913507 bam 12.9 GB
EGAF00001913508 bam 5.1 GB
EGAF00001913509 bam 11.0 GB
EGAF00001913510 bam 14.0 GB
EGAF00001913511 bam 5.0 GB
EGAF00001913512 bam 12.6 GB
EGAF00001913513 bam 4.4 GB
EGAF00001913514 bam 10.2 GB
EGAF00001913515 bam 13.8 GB
EGAF00001913516 bam 5.9 GB
EGAF00001913517 bam 10.4 GB
EGAF00001913518 bam 5.4 GB
EGAF00001913519 bam 10.2 GB
EGAF00001913520 bam 4.0 GB
EGAF00001913521 bam 6.4 GB
EGAF00001913522 bam 4.6 GB
EGAF00001913523 bam 12.7 GB
EGAF00001913524 bam 6.1 GB
EGAF00001913525 bam 10.3 GB
EGAF00001913526 bam 3.9 GB
EGAF00001913527 bam 12.8 GB
EGAF00001913528 bam 6.0 GB
EGAF00001913529 bam 11.2 GB
EGAF00001913530 bam 11.9 GB
EGAF00001913531 bam 5.8 GB
EGAF00001913532 bam 9.4 GB
EGAF00001913533 bam 4.6 GB
EGAF00001913534 bam 8.4 GB
EGAF00001913535 bam 15.7 GB
EGAF00001913536 bam 5.2 GB
EGAF00001913537 bam 9.6 GB
EGAF00001913538 bam 4.1 GB
EGAF00001913539 bam 13.1 GB
EGAF00001913540 bam 10.7 GB
EGAF00001913541 bam 6.6 GB
EGAF00001913542 bam 4.6 GB
EGAF00001913543 bam 10.9 GB
EGAF00001913544 bam 4.6 GB
EGAF00001913545 bam 11.8 GB
EGAF00001913546 bam 4.7 GB
EGAF00001913547 bam 7.5 GB
EGAF00001913548 bam 12.0 GB
EGAF00001913549 bam 5.0 GB
EGAF00001913550 bam 10.2 GB
EGAF00001913551 bam 4.5 GB
EGAF00001913552 bam 10.3 GB
EGAF00001913553 bam 5.1 GB
EGAF00001913554 bam 13.9 GB
195 Files (1.7 TB)