Transcriptome sequencing of Gingivo-buccal Cancer - ICGC India Project YR03
This dataset pertains to transcriptome sequencing of paired RNA samples.RNA was isolated from the tumor and adjacent normal tissues of 12 patients (24 samples). We have performed rRNA removal followed by total RNA sequencing in Illumina HiSeq platform.We have uploaded TopHat2 aligned BAM files.
- 07/03/2018
- 24 samples
- DAC: EGAC00001000010
- Technology: Illumina HiSeq 2500
- HMB DUO:0000006 (version: 2021-02-23)health or medical or biomedical researchThis data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.
- NPUNCU DUO:0000018 (version: 2021-02-23)not for profit, non commercial use onlyThis data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.
- PS DUO:0000027 (version: 2021-02-23)project specific restrictionThis data use modifier indicates that use is limited to use within an approved project.
- GRU DUO:0000042 (version: 2021-02-23)general research useThis data use permission indicates that use is allowed for general research use for any research purpose.
ICGC Data Access
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001002851 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00001871996 | bam | 11.1 GB | ||
| EGAF00001871997 | bam | 6.7 GB | ||
| EGAF00001871998 | bam | 10.7 GB | ||
| EGAF00001871999 | bam | 10.0 GB | ||
| EGAF00001872000 | bam | 9.3 GB | ||
| EGAF00001872001 | bam | 12.5 GB | ||
| EGAF00001872002 | bam | 10.1 GB | ||
| EGAF00001872003 | bam | 6.7 GB | ||
| EGAF00001872004 | bam | 9.8 GB | ||
| EGAF00001872005 | bam | 7.9 GB | ||
| EGAF00001872006 | bam | 7.1 GB | ||
| EGAF00001872007 | bam | 7.3 GB | ||
| EGAF00001872008 | bam | 6.8 GB | ||
| EGAF00001872009 | bam | 7.4 GB | ||
| EGAF00001872010 | bam | 7.1 GB | ||
| EGAF00001872011 | bam | 9.0 GB | ||
| EGAF00001872012 | bam | 14.3 GB | ||
| EGAF00001872013 | bam | 9.1 GB | ||
| EGAF00001872014 | bam | 9.3 GB | ||
| EGAF00001872015 | bam | 8.5 GB | ||
| EGAF00001872016 | bam | 8.0 GB | ||
| EGAF00001872017 | bam | 7.7 GB | ||
| EGAF00001872018 | bam | 7.2 GB | ||
| EGAF00001872019 | bam | 8.5 GB | ||
| 24 Files (212.0 GB) | ||||