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Genomic profiling of well-differentiated and dedifferentiated liposarcoma from the same patient

Well-differentiated, dedifferentiated, and matched normal tissues from liposarcoma (51 specimens) from 17 patients were obtained for whole exome sequencing. Tumors were submitted from 9 patients were used for RNA sequencing. The bam files are made available in this dataset.

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UNIVERSITY OF TEXAS MD ANDERSON CANCER CENTER DEPARTMENT OF GENOMIC MEDICINE DATA ACCESS AGREEMENT

UNIVERSITY OF TEXAS MD ANDERSON CANCER CENTER DEPARTMENT OF GENOMIC MEDICINE DATA ACCESS AGREEMENT This agreement discloses the conditions under which any human genomic, proteomic, and immune profiling Data generated by the University of Texas Department of Genomic Medicine is to be accessed from public databases such as dbGAP and EGA. By signing this agreement, you, the User and Associates (collaborators, staff scientists, and trainees) agree to abide by the terms and conditions of data access set out in this agreement. Terms and Conditions: 1. The Data is to be used for research only including analyses of somatic, germline, structural variants, differential expression patterns, and immune infiltrates. 2. The Data is to be stored in an appropriate password-protected computational infrastructure monitored by your institutional information technology group. 3. You, as the User, are a laboratory head, principal investigator and take responsibility for the distribution, use, storage, and management of the Data in question. 4. You, the User and Associates are to be co-signees of an IRB protocol for the use of this data. The IRB protocol number should be referenced in the Materials Transfers Agreement. 5. The Materials Transfers Agreement should also state the purpose and goal of the Data usage. 6. You may use the Data for research that could result in intellectual property or commercial product. 7. Confidentiality of Data Subjects will be preserved by you the User and Associates. 8. The accession number of the study under which the Data is received should be incorporated and referenced appropriately in any publication that results from use of the Data. 9. Any breach of this agreement will result in termination and immediate permanent deletion of Data. 10. The Data is subject to international laws. Database: ___________________________________ Study Accession Number: ___________________________ Name of Applicant(s): ______________________________ _______________________________ _______________________________ Signature of Applicant(s) ___________________________ ______________________________ _________________________________ Email address of Applicant(s): _______________________ ________________________ _________________________ Telephone number of Applicant(s): ___________________ Name of the Information Technology Director of the Institution: _______________________________ Signature of the Institutional Authority: ______________________________ Print Name: __________________________ User Institution:_______________________ Date:_________________________________

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00001879495 bam 38.7 GB
EGAF00001879496 bam 43.3 GB
EGAF00001879497 bam 76.9 GB
EGAF00001879498 bam 37.0 GB
EGAF00001879499 bam 40.0 GB
EGAF00001879500 bam 73.1 GB
EGAF00001879501 bam 23.1 GB
EGAF00001879502 bam 21.6 GB
EGAF00001879503 bam 10.5 GB
EGAF00001879504 bam 26.8 GB
EGAF00001879505 bam 40.0 GB
EGAF00001879506 bam 11.8 GB
EGAF00001879507 bam 23.4 GB
EGAF00001879508 bam 24.2 GB
EGAF00001879509 bam 10.4 GB
EGAF00001879510 bam 40.5 GB
EGAF00001879511 bam 42.7 GB
EGAF00001879512 bam 36.2 GB
EGAF00001879513 bam 43.3 GB
EGAF00001879514 bam 32.0 GB
EGAF00001879515 bam 46.8 GB
EGAF00001879516 bam 42.6 GB
EGAF00001879517 bam 52.4 GB
EGAF00001879518 bam 47.1 GB
EGAF00001879519 bam 34.5 GB
EGAF00001879520 bam 65.3 GB
EGAF00001879521 bam 41.1 GB
EGAF00001879522 bam 11.7 GB
EGAF00001879523 bam 27.8 GB
EGAF00001879524 bam 12.9 GB
EGAF00001879525 bam 31.6 GB
EGAF00001879526 bam 30.5 GB
EGAF00001879527 bam 14.9 GB
EGAF00001879528 bam 32.2 GB
EGAF00001879529 bam 35.5 GB
EGAF00001879530 bam 15.0 GB
EGAF00001879531 bam 24.7 GB
EGAF00001879532 bam 17.2 GB
EGAF00001879533 bam 14.3 GB
EGAF00001879534 bam 26.2 GB
EGAF00001879535 bam 22.4 GB
EGAF00001879536 bam 16.4 GB
EGAF00001879537 bam 14.2 GB
EGAF00001879538 bam 28.5 GB
EGAF00001879539 bam 14.0 GB
EGAF00001879540 bam 26.5 GB
EGAF00001879541 bam 26.8 GB
EGAF00001879542 bam 15.8 GB
EGAF00001879543 bam 22.8 GB
EGAF00001879544 bam 20.2 GB
EGAF00001879545 bam 12.2 GB
EGAF00001879546 bam 5.6 GB
EGAF00001879547 bam 4.3 GB
EGAF00001879548 bam 11.7 GB
EGAF00001879549 bam 14.2 GB
EGAF00001879550 bam 12.8 GB
EGAF00001879551 bam 8.1 GB
EGAF00001879552 bam 8.2 GB
EGAF00001879553 bam 7.2 GB
EGAF00001879554 bam 10.7 GB
EGAF00001879555 bam 4.3 GB
EGAF00001879556 bam 5.5 GB
EGAF00001879557 bam 12.3 GB
EGAF00001879558 bam 12.5 GB
EGAF00001879559 bam 2.8 GB
EGAF00001879560 bam 8.2 GB
EGAF00001879561 bam 7.8 GB
EGAF00001879562 bam 18.3 GB
EGAF00001879563 bam 6.3 GB
69 Files (1.7 TB)