Homologous recombination deficient breast cancers
Exome sequencing data from homologous recombination deficient primary breast cancers as assessed by the functional RAD51 based HR test. There are 12 tumour samples, of which 10 also have matching normal.
- 22 samples
- DAC: EGAC00001000811
- Technology: Illumina HiSeq 2500
Breast cancer DNA repair policy
Breast cancer DNA repair policy includes the controlled public distribution of exome sequencing data of primary breast cancers with defects in DNA repair pathways Access to this data will be controlled by the DAC. Access to data is permitted after submission of a research question, which will be evaluated by the DAC main contact. The data can only be used for this particular research question. In the event of publication, the original publication of this data must be properly referenced (Functional ex vivo assay reveals homologous recombination deficiency in breast cancer beyond BRCA gene defects, Titia G. Meijer, Nicole S. Verkaik, Anieta M. Sieuwerts, Job van Riet, Kishan A.T. Naipal, Carolien H.M. van Deurzen, Michael A. den Bakker, Hein F.B.M. Sleddens, Hendrikus-Jan Dubbink, T. Dorine den Toom, Winand N.M. Dinjens, Esther Lips, Petra M. Nederlof, Marcel Smid, Harmen J. G. van de Werken, Roland Kanaar, John W. M. Martens, Agnes Jager and Dik C. van Gent, Clin Cancer Res. 2018 Aug 23. pii: clincanres.0063.2018. doi: 10.1158/1078-0432.CCR-18-0063. [Epub ahead of print]) as well as co-authorship of the DAC main contact must be guaranteed.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
Study ID | Study Title | Study Type |
---|---|---|
Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
ID | File Type | Size | Located in | |
---|---|---|---|---|
EGAF00001841250 | bam | 7.7 GB | ||
EGAF00001841251 | bam | 3.4 GB | ||
EGAF00001841252 | bam | 7.9 GB | ||
EGAF00001841253 | bam | 3.0 GB | ||
EGAF00001841254 | bam | 5.9 GB | ||
EGAF00001841255 | bam | 6.0 GB | ||
EGAF00001841256 | bam | 6.9 GB | ||
EGAF00001841257 | bam | 2.6 GB | ||
EGAF00001841258 | bam | 22.1 GB | ||
EGAF00001841259 | bam | 3.7 GB | ||
EGAF00001841260 | bam | 6.5 GB | ||
EGAF00001841261 | bam | 10.8 GB | ||
EGAF00001841262 | bam | 6.6 GB | ||
EGAF00001841263 | bam | 7.0 GB | ||
EGAF00001841264 | bam | 7.2 GB | ||
EGAF00001841265 | bam | 6.4 GB | ||
EGAF00001841266 | bam | 2.1 GB | ||
EGAF00001841267 | bam | 10.0 GB | ||
EGAF00001841268 | bam | 5.4 GB | ||
EGAF00001841269 | bam | 9.1 GB | ||
EGAF00001841270 | bam | 11.9 GB | ||
EGAF00001841388 | fastq.bz2 | 293.9 MB | ||
EGAF00001841389 | fastq.bz2 | 297.7 MB | ||
EGAF00001841390 | fastq.bz2 | 1.4 GB | ||
EGAF00001841391 | fastq.bz2 | 1.4 GB | ||
EGAF00001841392 | fastq.bz2 | 3.0 GB | ||
EGAF00001841393 | fastq.bz2 | 2.9 GB | ||
EGAF00001841394 | fastq.bz2 | 2.4 GB | ||
EGAF00001841395 | fastq.bz2 | 2.4 GB | ||
EGAF00001841396 | fastq.bz2 | 446.1 MB | ||
EGAF00001841397 | fastq.bz2 | 476.3 MB | ||
EGAF00001841398 | fastq.bz2 | 1.3 GB | ||
EGAF00001841399 | fastq.bz2 | 1.2 GB | ||
EGAF00001841400 | fastq.bz2 | 2.2 GB | ||
EGAF00001841401 | fastq.bz2 | 2.2 GB | ||
EGAF00001841402 | fastq.bz2 | 7.0 GB | ||
EGAF00001841403 | fastq.bz2 | 7.2 GB | ||
EGAF00001841404 | fastq.bz2 | 1.7 GB | ||
EGAF00001841405 | fastq.bz2 | 1.7 GB | ||
EGAF00001841406 | fastq.bz2 | 2.9 GB | ||
EGAF00001841407 | fastq.bz2 | 2.9 GB | ||
EGAF00001841408 | fastq.bz2 | 3.2 GB | ||
EGAF00001841409 | fastq.bz2 | 3.1 GB | ||
EGAF00001841410 | fastq.bz2 | 1.6 GB | ||
EGAF00001841411 | fastq.bz2 | 1.6 GB | ||
EGAF00001841412 | fastq.bz2 | 1.2 GB | ||
EGAF00001841413 | fastq.bz2 | 1.3 GB | ||
EGAF00001841414 | fastq.bz2 | 3.3 GB | ||
EGAF00001841415 | fastq.bz2 | 3.3 GB | ||
EGAF00001841416 | fastq.bz2 | 2.9 GB | ||
EGAF00001841417 | fastq.bz2 | 2.8 GB | ||
EGAF00001841418 | fastq.bz2 | 173.9 MB | ||
EGAF00001841419 | fastq.bz2 | 165.3 MB | ||
EGAF00001841420 | fastq.bz2 | 814.0 MB | ||
EGAF00001841421 | fastq.bz2 | 852.1 MB | ||
EGAF00001841422 | fastq.bz2 | 3.5 GB | ||
EGAF00001841423 | fastq.bz2 | 3.7 GB | ||
EGAF00001841424 | fastq.gz | 6.6 GB | ||
EGAF00001841425 | fastq.gz | 6.9 GB | ||
EGAF00001841426 | fastq.gz | 3.2 GB | ||
EGAF00001841427 | fastq.gz | 3.4 GB | ||
EGAF00001841428 | fastq.gz | 5.5 GB | ||
EGAF00001841429 | fastq.gz | 5.8 GB | ||
EGAF00001841430 | fastq.gz | 6.0 GB | ||
EGAF00001841431 | fastq.gz | 6.3 GB | ||
EGAF00001841432 | fastq.gz | 1.2 GB | ||
EGAF00001841433 | fastq.gz | 1.2 GB | ||
EGAF00001841434 | fastq.bz2 | 1.6 GB | ||
EGAF00001841435 | fastq.bz2 | 1.6 GB | ||
EGAF00001841436 | fastq.bz2 | 2.1 GB | ||
EGAF00001841437 | fastq.bz2 | 2.3 GB | ||
EGAF00001841438 | fastq.bz2 | 1.9 GB | ||
EGAF00001841439 | fastq.bz2 | 1.9 GB | ||
EGAF00001841440 | fastq.bz2 | 1.2 GB | ||
EGAF00001841441 | fastq.bz2 | 1.2 GB | ||
EGAF00001841442 | fastq.bz2 | 1.5 GB | ||
EGAF00001841443 | fastq.bz2 | 1.5 GB | ||
EGAF00001841444 | fastq.bz2 | 3.1 GB | ||
EGAF00001841445 | fastq.bz2 | 3.1 GB | ||
79 Files (299.7 GB) |