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Homologous recombination deficient breast cancers

Exome sequencing data from homologous recombination deficient primary breast cancers as assessed by the functional RAD51 based HR test. There are 12 tumour samples, of which 10 also have matching normal.

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Breast cancer DNA repair policy

Breast cancer DNA repair policy includes the controlled public distribution of exome sequencing data of primary breast cancers with defects in DNA repair pathways Access to this data will be controlled by the DAC. Access to data is permitted after submission of a research question, which will be evaluated by the DAC main contact. The data can only be used for this particular research question. In the event of publication, the original publication of this data must be properly referenced (Functional ex vivo assay reveals homologous recombination deficiency in breast cancer beyond BRCA gene defects, Titia G. Meijer, Nicole S. Verkaik, Anieta M. Sieuwerts, Job van Riet, Kishan A.T. Naipal, Carolien H.M. van Deurzen, Michael A. den Bakker, Hein F.B.M. Sleddens, Hendrikus-Jan Dubbink, T. Dorine den Toom, Winand N.M. Dinjens, Esther Lips, Petra M. Nederlof, Marcel Smid, Harmen J. G. van de Werken, Roland Kanaar, John W. M. Martens, Agnes Jager and Dik C. van Gent, Clin Cancer Res. 2018 Aug 23. pii: clincanres.0063.2018. doi: 10.1158/1078-0432.CCR-18-0063. [Epub ahead of print]) as well as co-authorship of the DAC main contact must be guaranteed.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00001841250 bam 7.7 GB
EGAF00001841251 bam 3.4 GB
EGAF00001841252 bam 7.9 GB
EGAF00001841253 bam 3.0 GB
EGAF00001841254 bam 5.9 GB
EGAF00001841255 bam 6.0 GB
EGAF00001841256 bam 6.9 GB
EGAF00001841257 bam 2.6 GB
EGAF00001841258 bam 22.1 GB
EGAF00001841259 bam 3.7 GB
EGAF00001841260 bam 6.5 GB
EGAF00001841261 bam 10.8 GB
EGAF00001841262 bam 6.6 GB
EGAF00001841263 bam 7.0 GB
EGAF00001841264 bam 7.2 GB
EGAF00001841265 bam 6.4 GB
EGAF00001841266 bam 2.1 GB
EGAF00001841267 bam 10.0 GB
EGAF00001841268 bam 5.4 GB
EGAF00001841269 bam 9.1 GB
EGAF00001841270 bam 11.9 GB
EGAF00001841388 fastq.bz2 293.9 MB
EGAF00001841389 fastq.bz2 297.7 MB
EGAF00001841390 fastq.bz2 1.4 GB
EGAF00001841391 fastq.bz2 1.4 GB
EGAF00001841392 fastq.bz2 3.0 GB
EGAF00001841393 fastq.bz2 2.9 GB
EGAF00001841394 fastq.bz2 2.4 GB
EGAF00001841395 fastq.bz2 2.4 GB
EGAF00001841396 fastq.bz2 446.1 MB
EGAF00001841397 fastq.bz2 476.3 MB
EGAF00001841398 fastq.bz2 1.3 GB
EGAF00001841399 fastq.bz2 1.2 GB
EGAF00001841400 fastq.bz2 2.2 GB
EGAF00001841401 fastq.bz2 2.2 GB
EGAF00001841402 fastq.bz2 7.0 GB
EGAF00001841403 fastq.bz2 7.2 GB
EGAF00001841404 fastq.bz2 1.7 GB
EGAF00001841405 fastq.bz2 1.7 GB
EGAF00001841406 fastq.bz2 2.9 GB
EGAF00001841407 fastq.bz2 2.9 GB
EGAF00001841408 fastq.bz2 3.2 GB
EGAF00001841409 fastq.bz2 3.1 GB
EGAF00001841410 fastq.bz2 1.6 GB
EGAF00001841411 fastq.bz2 1.6 GB
EGAF00001841412 fastq.bz2 1.2 GB
EGAF00001841413 fastq.bz2 1.3 GB
EGAF00001841414 fastq.bz2 3.3 GB
EGAF00001841415 fastq.bz2 3.3 GB
EGAF00001841416 fastq.bz2 2.9 GB
EGAF00001841417 fastq.bz2 2.8 GB
EGAF00001841418 fastq.bz2 173.9 MB
EGAF00001841419 fastq.bz2 165.3 MB
EGAF00001841420 fastq.bz2 814.0 MB
EGAF00001841421 fastq.bz2 852.1 MB
EGAF00001841422 fastq.bz2 3.5 GB
EGAF00001841423 fastq.bz2 3.7 GB
EGAF00001841424 fastq.gz 6.6 GB
EGAF00001841425 fastq.gz 6.9 GB
EGAF00001841426 fastq.gz 3.2 GB
EGAF00001841427 fastq.gz 3.4 GB
EGAF00001841428 fastq.gz 5.5 GB
EGAF00001841429 fastq.gz 5.8 GB
EGAF00001841430 fastq.gz 6.0 GB
EGAF00001841431 fastq.gz 6.3 GB
EGAF00001841432 fastq.gz 1.2 GB
EGAF00001841433 fastq.gz 1.2 GB
EGAF00001841434 fastq.bz2 1.6 GB
EGAF00001841435 fastq.bz2 1.6 GB
EGAF00001841436 fastq.bz2 2.1 GB
EGAF00001841437 fastq.bz2 2.3 GB
EGAF00001841438 fastq.bz2 1.9 GB
EGAF00001841439 fastq.bz2 1.9 GB
EGAF00001841440 fastq.bz2 1.2 GB
EGAF00001841441 fastq.bz2 1.2 GB
EGAF00001841442 fastq.bz2 1.5 GB
EGAF00001841443 fastq.bz2 1.5 GB
EGAF00001841444 fastq.bz2 3.1 GB
EGAF00001841445 fastq.bz2 3.1 GB
79 Files (299.7 GB)