RNA-seq profiling of NKX6.1 reporter iPSC lines for isolation and analysis of functionally relevant neuronal and pancreas populations
We generated human induced pluripotent stem cell (iPSC) lines with a GFP reporter inserted in the endogenous NKX6.1 locus. Characterisation of the reporter lines demonstrated faithful GFP labelling of NKX6.1 expression during pancreas and motor neuron differentiation. We performed three independent in vitro differentiations towards the pancreatic endocrine lineage. We FACS-purified GFP positive and negative cells from stage 7 cultures, and generated Smart-Seq2 RNA-sequencing libraries for the pre-sorted cells, as well as the two GFP-sorted cell populations. Gene expression profiling by RNA-sequencing reveals that the NKX6.1-positive population closely resembles mature human beta cells and the functional evaluation of purified populations shows that the glucose-responsive beta-like cells are enriched within the NKX6.1-positive population. These reporter lines provide a valuable resource to the scientific community for the derivation of functional relevant pancreas and neuronal cell subtypes.
- 15 samples
- DAC: EGAC00001000335
- Technology: Illumina HiSeq 4000
Human Endocrine Pancreas iPSC Model Data Access Agreement
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Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
Study ID | Study Title | Study Type |
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EGAS00001002802 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
ID | File Type | Size | Located in | |
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EGAF00001835932 | bam | 3.1 GB | ||
EGAF00001835933 | bam | 3.1 GB | ||
EGAF00001835934 | bam | 3.1 GB | ||
EGAF00001835935 | bam | 3.3 GB | ||
EGAF00001835936 | bam | 3.0 GB | ||
EGAF00001835937 | bam | 3.0 GB | ||
EGAF00001835938 | bam | 3.2 GB | ||
EGAF00001835939 | bam | 3.2 GB | ||
EGAF00001835940 | bam | 3.3 GB | ||
EGAF00001835941 | bam | 3.0 GB | ||
EGAF00001835942 | bam | 3.2 GB | ||
EGAF00001835943 | bam | 3.3 GB | ||
EGAF00001835944 | bam | 3.0 GB | ||
EGAF00001835945 | bam | 3.1 GB | ||
EGAF00001835946 | bam | 3.1 GB | ||
15 Files (47.2 GB) |