Somatic mutations in 106 small intestine adenocarcinoma
106 FFPE tumor samples from small bowel were sequenced with Illumina HiSeq 4000. Exome capture was performed with NimbleGen SeqCap EZ Exome Library v3 Kit. Reads were aligned with BWA–MEM v.0.7.12 to GRCh37 reference genome. Variant calls were produced with GATK HaplotypeCaller. Variant calls were filtered against all data from gnomAD database using allele frequency threshold 0.0001 in order to remove germline variation.
- 26/02/2018
- 106 samples
- DAC: EGAC00001000649
Policy for the pseudomyxoma peritonei exome sequencing vcf-files
Permission to access the pseudomyxoma peritonei exome sequencing vcf-files will be given to pseudomyxoma peritonei research.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00001847651 | vcf | 849.6 kB | ||
| EGAF00001847652 | vcf | 329.1 kB | ||
| EGAF00001847653 | vcf | 294.9 kB | ||
| EGAF00001847655 | vcf | 388.3 kB | ||
| EGAF00001847656 | vcf | 343.3 kB | ||
| EGAF00001847657 | vcf | 447.8 kB | ||
| EGAF00001847659 | vcf | 304.0 kB | ||
| EGAF00001847660 | vcf | 357.2 kB | ||
| EGAF00001847661 | vcf | 327.8 kB | ||
| EGAF00001847681 | vcf | 306.5 kB | ||
| EGAF00001847682 | vcf | 315.2 kB | ||
| EGAF00001847683 | vcf | 1.5 MB | ||
| EGAF00001847685 | vcf | 456.8 kB | ||
| EGAF00001847686 | vcf | 333.5 kB | ||
| EGAF00001847687 | vcf | 316.0 kB | ||
| EGAF00001847688 | vcf | 331.6 kB | ||
| EGAF00001847690 | vcf | 296.6 kB | ||
| EGAF00001847691 | vcf | 315.0 kB | ||
| EGAF00001847692 | vcf | 351.5 kB | ||
| EGAF00001847711 | vcf | 355.1 kB | ||
| EGAF00001847960 | vcf | 268.9 kB | ||
| EGAF00001847961 | vcf | 265.4 kB | ||
| EGAF00001847962 | vcf | 398.0 kB | ||
| EGAF00001847964 | vcf | 329.5 kB | ||
| EGAF00001847965 | vcf | 311.0 kB | ||
| EGAF00001847966 | vcf | 322.7 kB | ||
| EGAF00001847968 | vcf | 293.8 kB | ||
| EGAF00001848003 | vcf | 324.8 kB | ||
| EGAF00001848004 | vcf | 323.3 kB | ||
| EGAF00001848006 | vcf | 1.5 MB | ||
| EGAF00001848007 | vcf | 329.2 kB | ||
| EGAF00001848008 | vcf | 338.1 kB | ||
| EGAF00001848010 | vcf | 326.5 kB | ||
| EGAF00001848011 | vcf | 392.8 kB | ||
| EGAF00001848012 | vcf | 339.5 kB | ||
| EGAF00001848014 | vcf | 355.8 kB | ||
| EGAF00001848037 | vcf | 295.7 kB | ||
| EGAF00001848038 | vcf | 321.0 kB | ||
| EGAF00001848039 | vcf | 2.0 MB | ||
| EGAF00001848041 | vcf | 2.0 MB | ||
| EGAF00001848042 | vcf | 303.0 kB | ||
| EGAF00001848043 | vcf | 346.1 kB | ||
| EGAF00001848045 | vcf | 272.9 kB | ||
| EGAF00001848046 | vcf | 439.4 kB | ||
| EGAF00001848047 | vcf | 327.4 kB | ||
| EGAF00001848071 | vcf | 312.6 kB | ||
| EGAF00001848072 | vcf | 502.3 kB | ||
| EGAF00001848073 | vcf | 375.2 kB | ||
| EGAF00001848074 | vcf | 308.3 kB | ||
| EGAF00001848076 | vcf | 1.6 MB | ||
| EGAF00001848077 | vcf | 364.3 kB | ||
| EGAF00001848078 | vcf | 485.9 kB | ||
| EGAF00001848080 | vcf | 287.6 kB | ||
| EGAF00001848081 | vcf | 812.8 kB | ||
| EGAF00001848082 | vcf | 379.5 kB | ||
| EGAF00001848111 | vcf | 375.1 kB | ||
| EGAF00001848112 | vcf | 307.0 kB | ||
| EGAF00001848113 | vcf | 294.4 kB | ||
| EGAF00001848114 | vcf | 312.6 kB | ||
| EGAF00001848116 | vcf | 325.7 kB | ||
| EGAF00001848117 | vcf | 350.3 kB | ||
| EGAF00001848118 | vcf | 1.8 MB | ||
| EGAF00001848119 | vcf | 274.1 kB | ||
| EGAF00001848121 | vcf | 481.2 kB | ||
| EGAF00001848122 | vcf | 358.7 kB | ||
| EGAF00001848149 | vcf | 3.4 MB | ||
| EGAF00001848150 | vcf | 287.3 kB | ||
| EGAF00001848152 | vcf | 279.7 kB | ||
| EGAF00001848153 | vcf | 300.2 kB | ||
| EGAF00001848154 | vcf | 276.3 kB | ||
| EGAF00001848156 | vcf | 287.2 kB | ||
| EGAF00001848157 | vcf | 286.3 kB | ||
| EGAF00001848158 | vcf | 839.8 kB | ||
| EGAF00001848160 | vcf | 275.6 kB | ||
| EGAF00001848179 | vcf | 339.1 kB | ||
| EGAF00001848181 | vcf | 314.8 kB | ||
| EGAF00001848182 | vcf | 335.0 kB | ||
| EGAF00001848183 | vcf | 394.0 kB | ||
| EGAF00001848184 | vcf | 343.9 kB | ||
| EGAF00001848186 | vcf | 297.7 kB | ||
| EGAF00001848187 | vcf | 854.7 kB | ||
| EGAF00001848188 | vcf | 318.0 kB | ||
| EGAF00001848190 | vcf | 359.7 kB | ||
| 83 Files (41.4 MB) | ||||