Southern African Human Genome Programme dataset
The SAHGP characterises the genomes of 24 individuals (8 Coloured and 16 black southeastern Bantu-speakers) using deep whole genome sequencing (WGS).
- 27/11/2017
- 24 samples
- DAC: EGAC00001000734
SAHGP Policy
Ethics approval for this pilot study was obtained from the Human Research Ethics Committee (Medical) of the University of the Witwatersrand, Johannesburg (Ethics approval code: M121182). The participants were fully informed of the nature of the project. Informed consent was obtained from each participant for the sharing of DNA samples and data. The genome data was obtained using a grant from the South African National Department of Science and Technology (DST).
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001002639 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00001768069 | bam | 88.4 GB | ||
| EGAF00001768070 | bai | 8.8 MB | ||
| EGAF00001768071 | bam | 91.1 GB | ||
| EGAF00001768072 | bai | 8.8 MB | ||
| EGAF00001768073 | bam | 94.0 GB | ||
| EGAF00001768074 | bai | 8.8 MB | ||
| EGAF00001768075 | bam | 91.7 GB | ||
| EGAF00001768076 | bai | 8.8 MB | ||
| EGAF00001768077 | bam | 87.8 GB | ||
| EGAF00001768078 | bai | 8.8 MB | ||
| EGAF00001768079 | bam | 89.7 GB | ||
| EGAF00001768080 | bai | 8.8 MB | ||
| EGAF00001768081 | bam | 87.4 GB | ||
| EGAF00001768082 | bai | 8.8 MB | ||
| EGAF00001768083 | bam | 75.0 GB | ||
| EGAF00001768084 | bai | 8.8 MB | ||
| EGAF00001768085 | bam | 83.5 GB | ||
| EGAF00001768086 | bai | 8.8 MB | ||
| EGAF00001768087 | bam | 98.4 GB | ||
| EGAF00001768088 | bai | 8.8 MB | ||
| EGAF00001768089 | bam | 92.7 GB | ||
| EGAF00001768090 | bai | 8.8 MB | ||
| EGAF00001768091 | bam | 86.5 GB | ||
| EGAF00001768092 | bai | 8.8 MB | ||
| EGAF00001768093 | bam | 75.7 GB | ||
| EGAF00001768094 | bai | 8.8 MB | ||
| EGAF00001768095 | bam | 59.1 GB | ||
| EGAF00001768096 | bai | 8.7 MB | ||
| EGAF00001768097 | bam | 84.1 GB | ||
| EGAF00001768098 | bai | 8.8 MB | ||
| EGAF00001768099 | bam | 96.8 GB | ||
| EGAF00001768100 | bai | 8.8 MB | ||
| EGAF00001768101 | bam | 84.3 GB | ||
| EGAF00001768102 | bai | 8.8 MB | ||
| EGAF00001768103 | bam | 82.8 GB | ||
| EGAF00001768104 | bai | 8.8 MB | ||
| EGAF00001768105 | bam | 83.4 GB | ||
| EGAF00001768106 | bai | 8.8 MB | ||
| EGAF00001768107 | bam | 83.8 GB | ||
| EGAF00001768108 | bai | 8.8 MB | ||
| EGAF00001768109 | bam | 82.8 GB | ||
| EGAF00001768110 | bai | 8.8 MB | ||
| EGAF00001768111 | bam | 89.0 GB | ||
| EGAF00001768112 | bai | 8.8 MB | ||
| EGAF00001768113 | bam | 89.0 GB | ||
| EGAF00001768114 | bai | 8.8 MB | ||
| EGAF00001768115 | bam | 87.3 GB | ||
| EGAF00001768116 | bai | 8.8 MB | ||
| EGAF00001777253 | vcf | 156.5 MB | ||
| EGAF00001777254 | vcf | 9.8 kB | ||
| EGAF00001777255 | vcf | 334.0 MB | ||
| EGAF00001777256 | vcf | 2.0 GB | ||
| EGAF00001777257 | vcf | 120.6 MB | ||
| EGAF00001777258 | vcf | 23.8 GB | ||
| EGAF00001777259 | vcf | 156.5 MB | ||
| EGAF00001777260 | vcf | 8.6 kB | ||
| EGAF00001777261 | vcf | 323.0 MB | ||
| EGAF00001777262 | vcf | 2.0 GB | ||
| EGAF00001777263 | vcf | 316.8 MB | ||
| EGAF00001777264 | vcf | 2.0 GB | ||
| EGAF00001777265 | vcf | 111.5 MB | ||
| EGAF00001777266 | vcf | 20.2 GB | ||
| EGAF00001777267 | vcf | 156.5 MB | ||
| EGAF00001777268 | vcf | 9.6 kB | ||
| EGAF00001777269 | vcf | 317.4 MB | ||
| EGAF00001777270 | vcf | 2.0 GB | ||
| EGAF00001777271 | vcf | 113.4 MB | ||
| EGAF00001777272 | vcf | 320.2 MB | ||
| EGAF00001777273 | vcf | 2.0 GB | ||
| EGAF00001777274 | vcf | 118.5 MB | ||
| EGAF00001777275 | vcf | 21.7 GB | ||
| EGAF00001777276 | vcf | 156.5 MB | ||
| EGAF00001777277 | vcf | 7.6 kB | ||
| EGAF00001777278 | vcf | 309.0 MB | ||
| EGAF00001777279 | vcf | 2.0 GB | ||
| EGAF00001777280 | vcf | 115.9 MB | ||
| EGAF00001777281 | vcf | 20.4 GB | ||
| EGAF00001777282 | vcf | 156.5 MB | ||
| EGAF00001777283 | vcf | 6.4 kB | ||
| EGAF00001777284 | vcf | 290.1 MB | ||
| EGAF00001777285 | vcf | 1.8 GB | ||
| EGAF00001777286 | vcf | 116.2 MB | ||
| EGAF00001777287 | vcf | 18.3 GB | ||
| EGAF00001777288 | vcf | 156.5 MB | ||
| EGAF00001777289 | vcf | 7.9 kB | ||
| EGAF00001777290 | vcf | 298.5 MB | ||
| EGAF00001777291 | vcf | 1.9 GB | ||
| EGAF00001777292 | vcf | 119.8 MB | ||
| EGAF00001777293 | vcf | 20.7 GB | ||
| EGAF00001777294 | vcf | 156.5 MB | ||
| EGAF00001777295 | vcf | 9.1 kB | ||
| EGAF00001777296 | vcf | 285.8 MB | ||
| EGAF00001777297 | vcf | 1.8 GB | ||
| EGAF00001777298 | vcf | 110.8 MB | ||
| EGAF00001777299 | vcf | 22.9 GB | ||
| EGAF00001777300 | vcf | 156.5 MB | ||
| EGAF00001777301 | vcf | 7.3 kB | ||
| EGAF00001777302 | vcf | 282.6 MB | ||
| EGAF00001777303 | vcf | 1.8 GB | ||
| EGAF00001777304 | vcf | 124.2 MB | ||
| EGAF00001777305 | vcf | 22.0 GB | ||
| EGAF00001777306 | vcf | 156.5 MB | ||
| EGAF00001777307 | vcf | 6.6 kB | ||
| EGAF00001777308 | vcf | 299.9 MB | ||
| EGAF00001777309 | vcf | 1.8 GB | ||
| EGAF00001777310 | vcf | 119.2 MB | ||
| EGAF00001777311 | vcf | 15.9 GB | ||
| EGAF00001777312 | vcf | 156.5 MB | ||
| EGAF00001777313 | vcf | 6.6 kB | ||
| EGAF00001777314 | vcf | 306.1 MB | ||
| EGAF00001777315 | vcf | 1.9 GB | ||
| EGAF00001777316 | vcf | 125.6 MB | ||
| EGAF00001777317 | vcf | 17.0 GB | ||
| EGAF00001777318 | vcf | 156.5 MB | ||
| EGAF00001777319 | vcf | 6.6 kB | ||
| EGAF00001777320 | vcf | 310.7 MB | ||
| EGAF00001777321 | vcf | 1.9 GB | ||
| EGAF00001777322 | vcf | 114.1 MB | ||
| EGAF00001777323 | vcf | 18.0 GB | ||
| EGAF00001777324 | vcf | 156.5 MB | ||
| EGAF00001777325 | vcf | 10.1 kB | ||
| EGAF00001777326 | vcf | 316.7 MB | ||
| EGAF00001777327 | vcf | 2.0 GB | ||
| EGAF00001777328 | vcf | 109.5 MB | ||
| EGAF00001777329 | vcf | 19.4 GB | ||
| EGAF00001777330 | vcf | 119.4 MB | ||
| EGAF00001777331 | vcf | 16.2 GB | ||
| EGAF00001777332 | vcf | 156.5 MB | ||
| EGAF00001777333 | vcf | 6.3 kB | ||
| EGAF00001777334 | vcf | 294.7 MB | ||
| EGAF00001777335 | vcf | 1.9 GB | ||
| EGAF00001777336 | vcf | 108.4 MB | ||
| EGAF00001777337 | vcf | 15.3 GB | ||
| EGAF00001777338 | vcf | 156.5 MB | ||
| EGAF00001777339 | vcf | 8.8 kB | ||
| EGAF00001777340 | vcf | 320.7 MB | ||
| EGAF00001777341 | vcf | 2.0 GB | ||
| EGAF00001777342 | vcf | 108.8 MB | ||
| EGAF00001777343 | vcf | 16.7 GB | ||
| EGAF00001777344 | vcf | 156.5 MB | ||
| EGAF00001777345 | vcf | 19.8 GB | ||
| EGAF00001777346 | vcf | 156.5 MB | ||
| EGAF00001777347 | vcf | 9.0 kB | ||
| EGAF00001777348 | vcf | 320.6 MB | ||
| EGAF00001777349 | vcf | 2.0 GB | ||
| EGAF00001777350 | vcf | 110.4 MB | ||
| EGAF00001777351 | vcf | 22.7 GB | ||
| EGAF00001777352 | vcf | 156.5 MB | ||
| EGAF00001777353 | vcf | 7.0 kB | ||
| EGAF00001777354 | vcf | 156.5 MB | ||
| EGAF00001777355 | vcf | 9.0 kB | ||
| EGAF00001777356 | vcf | 316.8 MB | ||
| EGAF00001777357 | vcf | 2.0 GB | ||
| EGAF00001777358 | vcf | 105.9 MB | ||
| EGAF00001777359 | vcf | 20.1 GB | ||
| EGAF00001777360 | vcf | 156.5 MB | ||
| EGAF00001777361 | vcf | 8.0 kB | ||
| EGAF00001777362 | vcf | 8.6 kB | ||
| EGAF00001777363 | vcf | 328.9 MB | ||
| EGAF00001777364 | vcf | 2.1 GB | ||
| EGAF00001777365 | vcf | 128.9 MB | ||
| EGAF00001777366 | vcf | 23.2 GB | ||
| EGAF00001777367 | vcf | 156.5 MB | ||
| EGAF00001777368 | vcf | 9.2 kB | ||
| EGAF00001777369 | vcf | 325.2 MB | ||
| EGAF00001777370 | vcf | 2.0 GB | ||
| EGAF00001777371 | vcf | 122.1 MB | ||
| EGAF00001777372 | vcf | 21.0 GB | ||
| EGAF00001777373 | vcf | 156.5 MB | ||
| EGAF00001777374 | vcf | 7.6 kB | ||
| EGAF00001777375 | vcf | 324.4 MB | ||
| EGAF00001777376 | vcf | 2.0 GB | ||
| EGAF00001777377 | vcf | 121.1 MB | ||
| EGAF00001777378 | vcf | 18.3 GB | ||
| EGAF00001777379 | vcf | 156.5 MB | ||
| EGAF00001777380 | vcf | 10.9 kB | ||
| EGAF00001777381 | vcf | 323.2 MB | ||
| EGAF00001777382 | vcf | 2.0 GB | ||
| EGAF00001777383 | vcf | 113.7 MB | ||
| EGAF00001777384 | vcf | 14.9 GB | ||
| EGAF00001777385 | vcf | 156.5 MB | ||
| EGAF00001777386 | vcf | 10.6 kB | ||
| EGAF00001777387 | vcf | 308.4 MB | ||
| EGAF00001777388 | vcf | 2.0 GB | ||
| EGAF00001777389 | vcf | 87.5 MB | ||
| EGAF00001777390 | vcf | 15.2 GB | ||
| EGAF00001777391 | vcf | 156.5 MB | ||
| EGAF00001777392 | vcf | 9.4 kB | ||
| EGAF00001777393 | vcf | 329.4 MB | ||
| EGAF00001777394 | vcf | 2.0 GB | ||
| EGAF00001777395 | vcf | 118.0 MB | ||
| EGAF00001777396 | vcf | 17.6 GB | ||
| 192 Files (2.6 TB) | ||||