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WXS files for paper titled 'Genomic Landscape of Pediatric Myelodysplastic Syndromes'

Paired whole exome sequencing for 32 primary MDS, 14 MDS/MPN, and 8 AML-MRC cases (total = 54). Normal comparator genomic DNA was extracted from lymphocytes purified by flow cytometry. Bulk myeloid cells were used as a source of tumor gDNA. Files uploaded are mapped BAM files.

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DAC to obtain datasets submitted by St. Jude Children's Research Hospital - Washington University Pediatric Cancer Genome Project

This document refers to a data set, which has been submitted to the European Genome Archive (EGA) for the restricted access by legitimate academic institutions that have agreed to comply with the terms of a Data Access Agreement drafted by the St. Jude Children's Research Hospital - Washington University Pediatric Cancer Genome Project Steering Committee. There are a number of steps that a researcher must take to obtain access to this data and the process is overseen by our Data Access Committee, called the St. Jude Children's Research Hospital - Washington University Pediatric Cancer Genome Project Steering Committee. For an overview of the guidelines and information concerning data access, such as general principles, application procedure, and assessment criteria, please visit http://explore.pediatriccancergenomeproject.org/dataAccess/GuidelinesAndInformation.pdf. For the data access agreement or an application, please visit http://explore.pediatriccancergenomeproject.org/dataAccess/ApplicationForm.pdf. For all other inquiries, please email PCGP_data_request@stjude.org. We can confirm that this submission is consistent with the informed consent of the participants of the study or has been granted ethical approval and is in accordance with the applicable laws and regulations.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00001772723 bam 11.0 GB
EGAF00001772724 bam 8.9 GB
EGAF00001772725 bam 9.8 GB
EGAF00001772726 bam 10.0 GB
EGAF00001772727 bam 9.1 GB
EGAF00001772728 bam 10.7 GB
EGAF00001772754 bam 9.4 GB
EGAF00001772755 bam 9.4 GB
EGAF00001772756 bam 11.2 GB
EGAF00001772757 bam 14.2 GB
EGAF00001772758 bam 8.1 GB
EGAF00001772759 bam 7.2 GB
EGAF00001772760 bam 10.2 GB
EGAF00001772761 bam 10.3 GB
EGAF00001772762 bam 9.2 GB
EGAF00001772763 bam 11.8 GB
EGAF00001772764 bam 13.2 GB
EGAF00001772765 bam 13.0 GB
EGAF00001772766 bam 11.9 GB
EGAF00001772767 bam 7.4 GB
EGAF00001772768 bam 13.0 GB
EGAF00001772769 bam 12.1 GB
EGAF00001772770 bam 13.4 GB
EGAF00001772771 bam 12.9 GB
EGAF00001772772 bam 21.8 GB
EGAF00001772773 bam 10.5 GB
EGAF00001772774 bam 5.8 GB
EGAF00001772775 bam 7.1 GB
EGAF00001772776 bam 10.1 GB
EGAF00001772777 bam 14.2 GB
EGAF00001772778 bam 11.9 GB
EGAF00001772793 bam 9.3 GB
EGAF00001772794 bam 12.4 GB
EGAF00001772795 bam 11.3 GB
EGAF00001772796 bam 13.3 GB
EGAF00001772797 bam 10.4 GB
EGAF00001772798 bam 11.7 GB
EGAF00001772799 bam 12.5 GB
EGAF00001772800 bam 10.4 GB
EGAF00001772801 bam 9.4 GB
EGAF00001772802 bam 10.8 GB
EGAF00001772803 bam 11.1 GB
EGAF00001772804 bam 7.7 GB
EGAF00001772805 bam 8.1 GB
EGAF00001772806 bam 8.6 GB
EGAF00001772807 bam 10.9 GB
EGAF00001772808 bam 9.8 GB
EGAF00001772809 bam 11.4 GB
EGAF00001772810 bam 8.3 GB
EGAF00001772811 bam 11.2 GB
EGAF00001772812 bam 8.2 GB
EGAF00001772813 bam 9.4 GB
EGAF00001772814 bam 9.7 GB
EGAF00001772815 bam 9.1 GB
EGAF00001772816 bam 8.9 GB
EGAF00001772817 bam 9.7 GB
EGAF00001772818 bam 8.9 GB
EGAF00001772819 bam 11.6 GB
EGAF00001772820 bam 14.0 GB
EGAF00001772821 bam 12.7 GB
EGAF00001772822 bam 9.4 GB
EGAF00001772823 bam 11.5 GB
EGAF00001772824 bam 11.7 GB
EGAF00001772825 bam 10.1 GB
EGAF00001772826 bam 15.2 GB
EGAF00001772827 bam 13.5 GB
EGAF00001772828 bam 8.1 GB
EGAF00001772829 bam 10.3 GB
EGAF00001772830 bam 9.3 GB
EGAF00001772831 bam 12.5 GB
EGAF00001772832 bam 7.9 GB
EGAF00001772833 bam 8.0 GB
EGAF00001772834 bam 12.0 GB
EGAF00001772835 bam 12.9 GB
EGAF00001772836 bam 9.7 GB
EGAF00001772837 bam 14.2 GB
EGAF00001772838 bam 9.4 GB
EGAF00001772839 bam 12.5 GB
EGAF00001772840 bam 9.0 GB
EGAF00001772841 bam 16.4 GB
EGAF00001772842 bam 13.3 GB
EGAF00001772843 bam 10.7 GB
EGAF00001772844 bam 9.6 GB
EGAF00001772845 bam 11.8 GB
EGAF00001772846 bam 9.5 GB
EGAF00001772847 bam 12.6 GB
EGAF00001772848 bam 9.8 GB
EGAF00001772849 bam 11.2 GB
EGAF00001772850 bam 9.1 GB
EGAF00001772851 bam 10.2 GB
EGAF00001772852 bam 8.5 GB
EGAF00001772853 bam 14.6 GB
EGAF00001772854 bam 11.8 GB
EGAF00001772855 bam 13.3 GB
94 Files (1.0 TB)