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Raw DNA and RNA data from breast cancer organoids, control samples and biopsies

Whole genome sequencing data for primary tumors, matching control material from blood and their corresponding organoid. Whole transcriptome data for organoids.

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Data access policy Department of Biomedical Genetics of UMC Utrecht

The Data Access Committee of the Department of Biomedical Genetics of UMC Utrecht (DAC-DGB-UMCU) governs data access to genomic datasets and accompanying metadata via a two-step access request procedure. Access to data will only be granted to qualified users for appropriate use. Step 1: contact the DAC-DBG-UMCU at DACDBG@umcutrecht.nl, providing a brief summary of your research proposal and the requested datasets. Your proposal will be reviewed based on the necessity of the requested dataset to answer the specific research question. Step 2: The DAC will request additional documentation to complete your application. The DAC-DBG-UMCU will decide if data access is permitted by evaluating the feasibility of the project, the scientific profile of the applicant(s), and whether the relevant ethical approvals justify the proposed research. Only unanimous voting results in acceptation of the request.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00001558906 bam 54.9 GB
EGAF00001558907 bam 63.5 GB
EGAF00001558908 bam 71.3 GB
EGAF00001558909 bam 118.5 GB
EGAF00001558910 bam 54.5 GB
EGAF00001558911 bam 63.0 GB
EGAF00001558912 bam 69.3 GB
EGAF00001558913 bam 62.7 GB
EGAF00001558914 bam 60.5 GB
EGAF00001558915 bam 72.4 GB
EGAF00001558916 bam 67.9 GB
EGAF00001558917 bam 62.1 GB
EGAF00001558918 bam 71.8 GB
EGAF00001558919 bam 79.7 GB
EGAF00001558920 bam 65.3 GB
EGAF00001558921 bam 75.1 GB
EGAF00001558922 bam 66.4 GB
EGAF00001558923 bam 62.1 GB
EGAF00001558924 bam 70.7 GB
EGAF00001558925 bam 73.7 GB
EGAF00001558926 bam 71.1 GB
EGAF00001558927 bam 64.2 GB
EGAF00001558928 bam 72.2 GB
EGAF00001558929 bam 73.1 GB
EGAF00001558930 bam 77.1 GB
EGAF00001558931 bam 69.0 GB
EGAF00001558932 bam 66.8 GB
EGAF00001558933 bam 75.0 GB
EGAF00001558934 bam 69.9 GB
EGAF00001558935 bam 108.7 GB
EGAF00001558936 bam 68.8 GB
EGAF00001558937 bam 68.1 GB
EGAF00001558938 bam 65.8 GB
EGAF00001558939 bam 102.8 GB
EGAF00001558940 bam 64.1 GB
EGAF00001558941 bam 70.1 GB
EGAF00001558942 bam 79.3 GB
EGAF00001558943 bam 66.1 GB
EGAF00001558944 bam 61.5 GB
EGAF00001558945 bam 79.1 GB
EGAF00001558946 bam 69.7 GB
EGAF00001558947 bam 61.1 GB
EGAF00001558948 bam 77.6 GB
EGAF00001558949 bam 113.4 GB
EGAF00001558950 bam 62.3 GB
EGAF00001558951 bam 59.7 GB
EGAF00001558952 bam 52.2 GB
EGAF00001558953 bam 67.4 GB
EGAF00001558954 bam 60.7 GB
EGAF00001558955 bam 63.1 GB
EGAF00001558956 bam 72.8 GB
EGAF00001558957 bam 51.9 GB
EGAF00001558958 bam 62.5 GB
EGAF00001558959 bam 63.7 GB
EGAF00001558960 bam 66.0 GB
EGAF00001558961 bam 76.3 GB
EGAF00001558962 bam 64.7 GB
EGAF00001558963 bam 59.1 GB
EGAF00001558965 bam 64.7 GB
EGAF00001558966 bam 107.8 GB
EGAF00001558967 bam 68.3 GB
EGAF00001558968 bam 73.4 GB
EGAF00001558969 bam 78.6 GB
EGAF00001558970 bam 74.6 GB
EGAF00001558971 bam 69.4 GB
EGAF00001558972 bam 52.2 GB
EGAF00001558973 bam 51.7 GB
EGAF00001558974 bam 105.1 GB
EGAF00001558975 bam 59.8 GB
EGAF00001558976 bam 70.1 GB
EGAF00001558977 bam 56.2 GB
EGAF00001558978 bam 65.4 GB
EGAF00001558979 bam 64.3 GB
EGAF00001558981 bam 62.8 GB
EGAF00001558982 bam 45.2 GB
EGAF00001558983 bam 57.6 GB
EGAF00001558984 bam 62.7 GB
EGAF00001558985 bam 66.8 GB
EGAF00001558986 bam 67.4 GB
EGAF00001558987 bam 64.9 GB
EGAF00001558988 bam 60.1 GB
EGAF00001558989 bam 79.7 GB
EGAF00001558990 bam 53.9 GB
EGAF00001558991 bam 54.4 GB
EGAF00001558992 bam 69.9 GB
EGAF00001558993 bam 67.2 GB
EGAF00001558994 bam 68.4 GB
EGAF00001558995 bam 53.3 GB
EGAF00001558996 bam 63.1 GB
EGAF00001558997 bam 66.5 GB
EGAF00001558998 bam 60.6 GB
EGAF00001558999 bam 68.1 GB
EGAF00001559000 bam 104.7 GB
EGAF00001559001 bam 74.9 GB
EGAF00001559002 bam 67.4 GB
EGAF00001559003 bam 67.1 GB
EGAF00001559004 bam 62.0 GB
EGAF00001559005 bam 116.1 GB
EGAF00001559006 bam 70.6 GB
EGAF00001757209 bam 2.1 GB
EGAF00001757210 bam 2.4 GB
EGAF00001757211 bam 3.2 GB
EGAF00001757212 bam 2.8 GB
EGAF00001757213 bam 2.5 GB
EGAF00001757214 bam 2.6 GB
EGAF00001757215 bam 2.9 GB
EGAF00001757216 bam 2.9 GB
EGAF00001757217 bam 3.1 GB
EGAF00001757218 bam 2.8 GB
EGAF00001757219 bam 2.7 GB
EGAF00001757220 bam 3.0 GB
EGAF00001757221 bam 2.7 GB
EGAF00001757222 bam 2.8 GB
EGAF00001757223 bam 2.5 GB
EGAF00001757224 bam 2.9 GB
EGAF00001757225 bam 2.5 GB
EGAF00001757226 bam 2.4 GB
EGAF00001757227 bam 2.0 GB
EGAF00001757228 bam 2.9 GB
EGAF00001757229 bam 2.6 GB
EGAF00001757230 bam 3.3 GB
EGAF00001757231 bam 2.1 GB
EGAF00001757232 bam 2.6 GB
EGAF00001757233 bam 3.3 GB
EGAF00001757234 bam 2.3 GB
EGAF00001757235 bam 2.8 GB
EGAF00001757236 bam 2.2 GB
EGAF00001757237 bam 2.2 GB
EGAF00001757238 bam 2.6 GB
129 Files (7.0 TB)