ICGC PCAWG Dataset: MALY-DE_PCAWG_RNA-Seq_TopHat2
ICGC PCAWG Dataset for RNA-Seq BAM aligned using TopHat2. Project: MALY-DE.
- 06/09/2017
- 99 samples
- DAC: EGAC00001000010
- HMB DUO:0000006 (version: 2021-02-23)health or medical or biomedical researchThis data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.
- NPUNCU DUO:0000018 (version: 2021-02-23)not for profit, non commercial use onlyThis data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.
- PS DUO:0000027 (version: 2021-02-23)project specific restrictionThis data use modifier indicates that use is limited to use within an approved project.
- GRU DUO:0000042 (version: 2021-02-23)general research useThis data use permission indicates that use is allowed for general research use for any research purpose.
ICGC Data Access
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001001692 | Cancer Genomics |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00001722553 | bam | 6.5 GB | ||
| EGAF00001722554 | bai | 3.1 MB | ||
| EGAF00001722555 | xml.gz | 3.5 kB | ||
| EGAF00001722556 | bam | 13.6 GB | ||
| EGAF00001722557 | bai | 4.5 MB | ||
| EGAF00001722558 | xml.gz | 3.5 kB | ||
| EGAF00001722559 | bam | 3.8 GB | ||
| EGAF00001722560 | bai | 2.9 MB | ||
| EGAF00001722561 | xml.gz | 3.5 kB | ||
| EGAF00001722562 | bam | 8.7 GB | ||
| EGAF00001722563 | bai | 7.1 MB | ||
| EGAF00001722564 | xml.gz | 3.5 kB | ||
| EGAF00001722565 | bam | 10.0 GB | ||
| EGAF00001722566 | bai | 4.4 MB | ||
| EGAF00001722567 | xml.gz | 3.5 kB | ||
| EGAF00001722568 | bam | 10.7 GB | ||
| EGAF00001722569 | bai | 7.1 MB | ||
| EGAF00001722570 | xml.gz | 3.5 kB | ||
| EGAF00001722571 | bam | 12.5 GB | ||
| EGAF00001722572 | bai | 5.8 MB | ||
| EGAF00001722573 | xml.gz | 3.5 kB | ||
| EGAF00001722574 | bam | 13.2 GB | ||
| EGAF00001722575 | bai | 6.1 MB | ||
| EGAF00001722576 | xml.gz | 3.5 kB | ||
| EGAF00001722577 | bam | 14.2 GB | ||
| EGAF00001722578 | bai | 6.1 MB | ||
| EGAF00001722579 | xml.gz | 3.5 kB | ||
| EGAF00001722580 | bam | 11.9 GB | ||
| EGAF00001722581 | bai | 6.6 MB | ||
| EGAF00001722582 | xml.gz | 3.5 kB | ||
| EGAF00001722583 | bam | 7.1 GB | ||
| EGAF00001722584 | bai | 5.5 MB | ||
| EGAF00001722585 | xml.gz | 3.5 kB | ||
| EGAF00001722586 | bam | 10.4 GB | ||
| EGAF00001722587 | bai | 7.1 MB | ||
| EGAF00001722588 | xml.gz | 3.5 kB | ||
| EGAF00001722589 | bam | 14.6 GB | ||
| EGAF00001722590 | bai | 6.2 MB | ||
| EGAF00001722591 | xml.gz | 3.5 kB | ||
| EGAF00001722592 | bam | 15.1 GB | ||
| EGAF00001722593 | bai | 6.9 MB | ||
| EGAF00001722594 | xml.gz | 3.5 kB | ||
| EGAF00001722595 | bam | 5.5 GB | ||
| EGAF00001722596 | bai | 5.8 MB | ||
| EGAF00001722597 | xml.gz | 3.5 kB | ||
| EGAF00001722598 | bam | 10.6 GB | ||
| EGAF00001722599 | bai | 6.7 MB | ||
| EGAF00001722600 | xml.gz | 3.5 kB | ||
| EGAF00001722601 | bam | 13.2 GB | ||
| EGAF00001722602 | bai | 6.5 MB | ||
| EGAF00001722603 | xml.gz | 3.5 kB | ||
| EGAF00001722604 | bam | 13.9 GB | ||
| EGAF00001722605 | bai | 5.9 MB | ||
| EGAF00001722606 | xml.gz | 3.5 kB | ||
| EGAF00001722607 | bam | 12.8 GB | ||
| EGAF00001722608 | bai | 6.9 MB | ||
| EGAF00001722609 | xml.gz | 3.5 kB | ||
| EGAF00001722610 | bam | 5.6 GB | ||
| EGAF00001722611 | bai | 5.5 MB | ||
| EGAF00001722612 | xml.gz | 3.5 kB | ||
| EGAF00001722613 | bam | 13.5 GB | ||
| EGAF00001722614 | bai | 6.6 MB | ||
| EGAF00001722615 | xml.gz | 3.5 kB | ||
| EGAF00001722616 | bam | 12.2 GB | ||
| EGAF00001722617 | bai | 5.4 MB | ||
| EGAF00001722618 | xml.gz | 3.5 kB | ||
| EGAF00001722619 | bam | 4.3 GB | ||
| EGAF00001722620 | bai | 5.3 MB | ||
| EGAF00001722621 | xml.gz | 3.5 kB | ||
| EGAF00001722631 | bam | 12.2 GB | ||
| EGAF00001722632 | bai | 6.3 MB | ||
| EGAF00001722633 | xml.gz | 3.5 kB | ||
| EGAF00001722634 | bam | 13.0 GB | ||
| EGAF00001722635 | bai | 6.3 MB | ||
| EGAF00001722636 | xml.gz | 3.5 kB | ||
| EGAF00001722637 | bam | 12.0 GB | ||
| EGAF00001722638 | bai | 6.8 MB | ||
| EGAF00001722639 | xml.gz | 3.5 kB | ||
| EGAF00001722697 | bam | 13.4 GB | ||
| EGAF00001722698 | bai | 6.3 MB | ||
| EGAF00001722699 | xml.gz | 3.5 kB | ||
| EGAF00001722703 | bam | 10.8 GB | ||
| EGAF00001722704 | bai | 5.6 MB | ||
| EGAF00001722705 | xml.gz | 3.5 kB | ||
| EGAF00001722706 | bam | 13.4 GB | ||
| EGAF00001722707 | bai | 7.0 MB | ||
| EGAF00001722708 | xml.gz | 3.5 kB | ||
| EGAF00001722709 | bam | 13.0 GB | ||
| EGAF00001722710 | bai | 5.8 MB | ||
| EGAF00001722711 | xml.gz | 3.5 kB | ||
| EGAF00001722712 | bam | 8.0 GB | ||
| EGAF00001722713 | bai | 5.5 MB | ||
| EGAF00001722714 | xml.gz | 3.5 kB | ||
| EGAF00001722715 | bam | 10.1 GB | ||
| EGAF00001722716 | bai | 6.4 MB | ||
| EGAF00001722717 | xml.gz | 3.5 kB | ||
| EGAF00001722718 | bam | 10.1 GB | ||
| EGAF00001722719 | bai | 6.4 MB | ||
| EGAF00001722720 | xml.gz | 3.5 kB | ||
| EGAF00001722721 | bam | 13.5 GB | ||
| EGAF00001722722 | bai | 6.0 MB | ||
| EGAF00001722723 | xml.gz | 3.5 kB | ||
| EGAF00001722724 | bam | 11.1 GB | ||
| EGAF00001722725 | bai | 6.5 MB | ||
| EGAF00001722726 | xml.gz | 3.5 kB | ||
| EGAF00001722727 | bam | 15.2 GB | ||
| EGAF00001722728 | bai | 7.0 MB | ||
| EGAF00001722729 | xml.gz | 3.5 kB | ||
| EGAF00001722730 | bam | 2.3 GB | ||
| EGAF00001722731 | bai | 3.3 MB | ||
| EGAF00001722732 | xml.gz | 3.5 kB | ||
| EGAF00001722733 | bam | 11.6 GB | ||
| EGAF00001722734 | bai | 5.9 MB | ||
| EGAF00001722735 | xml.gz | 3.5 kB | ||
| EGAF00001722886 | bam | 13.7 GB | ||
| EGAF00001722887 | bai | 3.9 MB | ||
| EGAF00001722888 | xml.gz | 3.5 kB | ||
| EGAF00001722889 | bam | 11.9 GB | ||
| EGAF00001722890 | bai | 3.8 MB | ||
| EGAF00001722891 | xml.gz | 3.5 kB | ||
| EGAF00001722892 | bam | 5.2 GB | ||
| EGAF00001722893 | bai | 2.7 MB | ||
| EGAF00001722894 | xml.gz | 3.5 kB | ||
| EGAF00001722895 | bam | 12.4 GB | ||
| EGAF00001722896 | bai | 4.3 MB | ||
| EGAF00001722897 | xml.gz | 3.5 kB | ||
| EGAF00001722898 | bam | 15.8 GB | ||
| EGAF00001722899 | bai | 7.3 MB | ||
| EGAF00001722900 | xml.gz | 3.5 kB | ||
| EGAF00001722901 | bam | 5.1 GB | ||
| EGAF00001722902 | bai | 5.5 MB | ||
| EGAF00001722903 | xml.gz | 3.5 kB | ||
| EGAF00001722904 | bam | 13.7 GB | ||
| EGAF00001722905 | bai | 5.9 MB | ||
| EGAF00001722906 | xml.gz | 3.5 kB | ||
| EGAF00001722907 | bam | 12.5 GB | ||
| EGAF00001722908 | bai | 5.9 MB | ||
| EGAF00001722909 | xml.gz | 3.5 kB | ||
| EGAF00001722910 | bam | 13.4 GB | ||
| EGAF00001722911 | bai | 5.8 MB | ||
| EGAF00001722912 | xml.gz | 3.5 kB | ||
| EGAF00001722913 | bam | 16.0 GB | ||
| EGAF00001722914 | bai | 6.2 MB | ||
| EGAF00001722915 | xml.gz | 3.5 kB | ||
| EGAF00001722916 | bam | 12.0 GB | ||
| EGAF00001722917 | bai | 6.3 MB | ||
| EGAF00001722918 | xml.gz | 3.5 kB | ||
| EGAF00001722919 | bam | 5.3 GB | ||
| EGAF00001722920 | bai | 5.1 MB | ||
| EGAF00001722921 | xml.gz | 3.5 kB | ||
| EGAF00001722922 | bam | 10.9 GB | ||
| EGAF00001722923 | bai | 7.4 MB | ||
| EGAF00001722924 | xml.gz | 3.5 kB | ||
| EGAF00001722925 | bam | 6.4 GB | ||
| EGAF00001722926 | bai | 5.5 MB | ||
| EGAF00001722927 | xml.gz | 3.5 kB | ||
| EGAF00001722928 | bam | 12.5 GB | ||
| EGAF00001722929 | bai | 7.3 MB | ||
| EGAF00001722930 | xml.gz | 3.5 kB | ||
| EGAF00001722931 | bam | 5.1 GB | ||
| EGAF00001722932 | bai | 4.7 MB | ||
| EGAF00001722933 | xml.gz | 3.5 kB | ||
| EGAF00001722934 | bam | 12.7 GB | ||
| EGAF00001722935 | bai | 6.2 MB | ||
| EGAF00001722936 | xml.gz | 3.5 kB | ||
| EGAF00001722955 | bam | 10.5 GB | ||
| EGAF00001722956 | bai | 6.2 MB | ||
| EGAF00001722957 | xml.gz | 3.5 kB | ||
| EGAF00001722958 | bam | 14.7 GB | ||
| EGAF00001722959 | bai | 6.2 MB | ||
| EGAF00001722960 | xml.gz | 3.5 kB | ||
| EGAF00001722961 | bam | 9.3 GB | ||
| EGAF00001722962 | bai | 5.7 MB | ||
| EGAF00001722963 | xml.gz | 3.5 kB | ||
| EGAF00001722973 | bam | 5.7 GB | ||
| EGAF00001722974 | bai | 5.6 MB | ||
| EGAF00001722975 | xml.gz | 3.5 kB | ||
| EGAF00001722976 | bam | 11.1 GB | ||
| EGAF00001722977 | bai | 6.5 MB | ||
| EGAF00001722978 | xml.gz | 3.5 kB | ||
| EGAF00001722979 | bam | 13.5 GB | ||
| EGAF00001722980 | bai | 6.2 MB | ||
| EGAF00001722981 | xml.gz | 3.5 kB | ||
| EGAF00001722982 | bam | 8.0 GB | ||
| EGAF00001722983 | bai | 4.4 MB | ||
| EGAF00001722984 | xml.gz | 3.5 kB | ||
| EGAF00001722985 | bam | 17.0 GB | ||
| EGAF00001722986 | bai | 6.8 MB | ||
| EGAF00001722987 | xml.gz | 3.5 kB | ||
| EGAF00001722988 | bam | 9.7 GB | ||
| EGAF00001722989 | bai | 7.2 MB | ||
| EGAF00001722990 | xml.gz | 3.5 kB | ||
| EGAF00001722991 | bam | 4.5 GB | ||
| EGAF00001722992 | bai | 4.9 MB | ||
| EGAF00001722993 | xml.gz | 3.5 kB | ||
| EGAF00001722994 | bam | 4.1 GB | ||
| EGAF00001722995 | bai | 4.4 MB | ||
| EGAF00001722996 | xml.gz | 3.5 kB | ||
| EGAF00001722997 | bam | 13.7 GB | ||
| EGAF00001722998 | bai | 6.0 MB | ||
| EGAF00001722999 | xml.gz | 3.5 kB | ||
| EGAF00001723000 | bam | 7.6 GB | ||
| EGAF00001723001 | bai | 6.4 MB | ||
| EGAF00001723002 | xml.gz | 3.5 kB | ||
| EGAF00001723003 | bam | 13.4 GB | ||
| EGAF00001723004 | bai | 6.8 MB | ||
| EGAF00001723005 | xml.gz | 3.5 kB | ||
| EGAF00001723006 | bam | 8.5 GB | ||
| EGAF00001723007 | bai | 4.3 MB | ||
| EGAF00001723008 | xml.gz | 3.5 kB | ||
| EGAF00001723009 | bam | 8.3 GB | ||
| EGAF00001723010 | bai | 5.0 MB | ||
| EGAF00001723011 | xml.gz | 3.5 kB | ||
| EGAF00001723012 | bam | 9.7 GB | ||
| EGAF00001723013 | bai | 6.4 MB | ||
| EGAF00001723014 | xml.gz | 3.5 kB | ||
| EGAF00001723015 | bam | 13.6 GB | ||
| EGAF00001723016 | bai | 6.7 MB | ||
| EGAF00001723017 | xml.gz | 3.5 kB | ||
| EGAF00001723018 | bam | 8.5 GB | ||
| EGAF00001723019 | bai | 5.3 MB | ||
| EGAF00001723020 | xml.gz | 3.5 kB | ||
| EGAF00001723021 | bam | 11.5 GB | ||
| EGAF00001723022 | bai | 6.8 MB | ||
| EGAF00001723023 | xml.gz | 3.5 kB | ||
| EGAF00001723024 | bam | 10.6 GB | ||
| EGAF00001723025 | bai | 6.4 MB | ||
| EGAF00001723026 | xml.gz | 3.5 kB | ||
| EGAF00001723027 | bam | 12.3 GB | ||
| EGAF00001723028 | bai | 6.5 MB | ||
| EGAF00001723029 | xml.gz | 3.5 kB | ||
| EGAF00001723033 | bam | 5.7 GB | ||
| EGAF00001723034 | bai | 5.3 MB | ||
| EGAF00001723035 | xml.gz | 3.5 kB | ||
| EGAF00001723066 | bam | 10.2 GB | ||
| EGAF00001723067 | bai | 5.9 MB | ||
| EGAF00001723068 | xml.gz | 3.5 kB | ||
| EGAF00001723069 | bam | 6.5 GB | ||
| EGAF00001723070 | bai | 4.8 MB | ||
| EGAF00001723071 | xml.gz | 3.5 kB | ||
| EGAF00001723072 | bam | 10.4 GB | ||
| EGAF00001723073 | bai | 6.8 MB | ||
| EGAF00001723074 | xml.gz | 3.5 kB | ||
| EGAF00001723075 | bam | 14.0 GB | ||
| EGAF00001723076 | bai | 6.1 MB | ||
| EGAF00001723077 | xml.gz | 3.5 kB | ||
| EGAF00001723078 | bam | 4.8 GB | ||
| EGAF00001723079 | bai | 5.3 MB | ||
| EGAF00001723080 | xml.gz | 3.5 kB | ||
| EGAF00001723081 | bam | 8.3 GB | ||
| EGAF00001723082 | bai | 6.1 MB | ||
| EGAF00001723083 | xml.gz | 3.5 kB | ||
| EGAF00001723084 | bam | 9.1 GB | ||
| EGAF00001723085 | bai | 5.1 MB | ||
| EGAF00001723086 | xml.gz | 3.6 kB | ||
| EGAF00001723087 | bam | 12.6 GB | ||
| EGAF00001723088 | bai | 5.6 MB | ||
| EGAF00001723089 | xml.gz | 3.5 kB | ||
| EGAF00001723090 | bam | 7.5 GB | ||
| EGAF00001723091 | bai | 5.4 MB | ||
| EGAF00001723092 | xml.gz | 3.5 kB | ||
| EGAF00001723093 | bam | 9.4 GB | ||
| EGAF00001723094 | bai | 5.4 MB | ||
| EGAF00001723095 | xml.gz | 3.6 kB | ||
| EGAF00001723096 | bam | 10.3 GB | ||
| EGAF00001723097 | bai | 6.2 MB | ||
| EGAF00001723098 | xml.gz | 3.5 kB | ||
| EGAF00001723099 | bam | 6.6 GB | ||
| EGAF00001723100 | bai | 5.5 MB | ||
| EGAF00001723101 | xml.gz | 3.5 kB | ||
| EGAF00001723102 | bam | 12.4 GB | ||
| EGAF00001723103 | bai | 6.7 MB | ||
| EGAF00001723104 | xml.gz | 3.5 kB | ||
| EGAF00001723105 | bam | 12.2 GB | ||
| EGAF00001723106 | bai | 5.6 MB | ||
| EGAF00001723107 | xml.gz | 3.5 kB | ||
| EGAF00001723108 | bam | 5.0 GB | ||
| EGAF00001723109 | bai | 5.3 MB | ||
| EGAF00001723110 | xml.gz | 3.5 kB | ||
| EGAF00001723111 | bam | 13.4 GB | ||
| EGAF00001723112 | bai | 7.0 MB | ||
| EGAF00001723113 | xml.gz | 3.5 kB | ||
| EGAF00001723114 | bam | 10.7 GB | ||
| EGAF00001723115 | bai | 6.4 MB | ||
| EGAF00001723116 | xml.gz | 3.5 kB | ||
| EGAF00001723117 | bam | 11.6 GB | ||
| EGAF00001723118 | bai | 6.1 MB | ||
| EGAF00001723119 | xml.gz | 3.5 kB | ||
| EGAF00001723120 | bam | 14.0 GB | ||
| EGAF00001723121 | bai | 6.3 MB | ||
| EGAF00001723122 | xml.gz | 3.5 kB | ||
| EGAF00001723123 | bam | 18.2 GB | ||
| EGAF00001723124 | bai | 6.4 MB | ||
| EGAF00001723125 | xml.gz | 3.5 kB | ||
| EGAF00001723126 | bam | 11.6 GB | ||
| EGAF00001723127 | bai | 6.4 MB | ||
| EGAF00001723128 | xml.gz | 3.5 kB | ||
| 297 Files (1.0 TB) | ||||