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Low-coverage whole genome sequencing data to study "A biobank of patient-derived pediatric brain tumor models"

Low-coverage whole genome sequencing data for 30 PDOX models (28 early passages, 4 late passages (2 overlaps)), 3 cell lines, and 21 matching human tumors

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Data Access Committee for DKFZ DACO B06x - EGAC00001000219

his document specifies the policy for granting access to the European Genome-phenome Archive (EGA) secure Web based tools for managing data access permissions to the data stored in the EGA database. Access is granted to those Data Access Committee members named in this document Paul Flicek, head of Genes, Genomes and Variation. Conditions of access: The account holder will abide by all current and future policies of the EBI for computer use as well as computer use policies of the European Molecular Biology Laboratory (EMBL), of which the EBI is a part. All EGA specific policies and standard operating procedures (SOPs) must also be followed. All applicable policies will be provided to the authorized users. Method of access: The EBI will create a personal account for the authorized person. The account username and password together with a RSA key provide access to the secure EGA infrastructure. A separate document with detailed guidelines on how to access and use these tools is provided to each account holder. The EGA helpdesk provides training when needed. Review: All individuals access to the EGA user authorization tools will be reviewed annually by Paul Flicek. Any staff changes affecting the authorized person must be provided immediately to Paul Flicek (flicek@ebi.ac.uk). Authorized Data Access Committee user: Dr. Ursula Weber German Cancer Research Center (DKFZ) Foundation under Public Law Im Neuenheimer Feld 580 69120 Heidelberg, Germany u.weber@Dkfz-Heidelberg.de Supervisor of Authorized user: Prof. Dr. Peter Lichter Division of Molecular Genetics German Cancer Research Center (DKFZ) Foundation under Public Law Im Neuenheimer Feld 580 69120 Heidelberg, Germany. Peter.Lichter@Dkfz-Heidelberg.de Prof. Dr. Stefan Pfister Division of Pediatric Neurooncology German Cancer Research Center (DKFZ) Foundation under Public Law Im Neuenheimer Feld 580 69120 Heidelberg, Germany. S.Pfister@dkfz-heidelberg.de

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
EGAS00001002536 Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00001720364 fastq.gz 3.7 GB
EGAF00001720365 fastq.gz 3.7 GB
EGAF00001720366 fastq.gz 2.0 GB
EGAF00001720367 fastq.gz 2.0 GB
EGAF00001720368 fastq.gz 3.0 GB
EGAF00001720369 fastq.gz 3.1 GB
EGAF00001720370 fastq.gz 2.8 GB
EGAF00001720371 fastq.gz 2.7 GB
EGAF00001720372 fastq.gz 3.0 GB
EGAF00001720373 fastq.gz 3.1 GB
EGAF00001720374 fastq.gz 1.6 GB
EGAF00001720375 fastq.gz 1.6 GB
EGAF00001720376 fastq.gz 3.0 GB
EGAF00001720377 fastq.gz 3.3 GB
EGAF00001720378 fastq.gz 2.4 GB
EGAF00001720379 fastq.gz 2.4 GB
EGAF00001720380 fastq.gz 2.4 GB
EGAF00001720381 fastq.gz 2.4 GB
EGAF00001720382 fastq.gz 2.2 GB
EGAF00001720383 fastq.gz 2.2 GB
EGAF00001720384 fastq.gz 1.9 GB
EGAF00001720385 fastq.gz 2.0 GB
EGAF00001720386 fastq.gz 1.7 GB
EGAF00001720387 fastq.gz 1.7 GB
EGAF00001720388 fastq.gz 1.9 GB
EGAF00001720389 fastq.gz 1.9 GB
EGAF00001720390 fastq.gz 2.3 GB
EGAF00001720391 fastq.gz 2.4 GB
EGAF00001720392 fastq.gz 3.2 GB
EGAF00001720393 fastq.gz 3.3 GB
EGAF00001720394 fastq.gz 1.5 GB
EGAF00001720395 fastq.gz 1.5 GB
EGAF00001720396 fastq.gz 3.3 GB
EGAF00001720397 fastq.gz 3.4 GB
EGAF00001720398 fastq.gz 2.5 GB
EGAF00001720399 fastq.gz 2.5 GB
EGAF00001720400 fastq.gz 6.1 GB
EGAF00001720401 fastq.gz 6.4 GB
EGAF00001720402 fastq.gz 3.2 GB
EGAF00001720403 fastq.gz 3.3 GB
EGAF00001720404 fastq.gz 3.5 GB
EGAF00001720405 fastq.gz 3.6 GB
EGAF00001720406 fastq.gz 2.3 GB
EGAF00001720407 fastq.gz 2.4 GB
EGAF00001720408 fastq.gz 2.7 GB
EGAF00001720409 fastq.gz 2.8 GB
EGAF00001720410 fastq.gz 2.3 GB
EGAF00001720411 fastq.gz 2.5 GB
EGAF00001720412 fastq.gz 1.3 GB
EGAF00001720413 fastq.gz 1.4 GB
EGAF00001720414 fastq.gz 1.5 GB
EGAF00001720415 fastq.gz 1.4 GB
EGAF00001720416 fastq.gz 3.8 GB
EGAF00001720417 fastq.gz 4.0 GB
EGAF00001720418 fastq.gz 2.6 GB
EGAF00001720419 fastq.gz 2.7 GB
EGAF00001720420 fastq.gz 2.6 GB
EGAF00001720421 fastq.gz 2.7 GB
EGAF00001720422 fastq.gz 7.8 GB
EGAF00001720423 fastq.gz 8.0 GB
EGAF00001720424 fastq.gz 2.2 GB
EGAF00001720425 fastq.gz 2.3 GB
EGAF00001720426 fastq.gz 1.0 GB
EGAF00001720427 fastq.gz 1.1 GB
EGAF00001720428 fastq.gz 4.5 GB
EGAF00001720429 fastq.gz 4.8 GB
EGAF00001720430 fastq.gz 3.6 GB
EGAF00001720431 fastq.gz 3.7 GB
EGAF00001720432 fastq.gz 2.1 GB
EGAF00001720433 fastq.gz 2.3 GB
EGAF00001720434 fastq.gz 2.7 GB
EGAF00001720435 fastq.gz 2.8 GB
EGAF00001720436 fastq.gz 1.1 GB
EGAF00001720437 fastq.gz 1.1 GB
EGAF00001720438 fastq.gz 1.8 GB
EGAF00001720439 fastq.gz 1.8 GB
EGAF00001720440 fastq.gz 1.9 GB
EGAF00001720441 fastq.gz 1.9 GB
EGAF00001720442 fastq.gz 3.4 GB
EGAF00001720443 fastq.gz 3.5 GB
EGAF00001720444 fastq.gz 3.2 GB
EGAF00001720445 fastq.gz 3.3 GB
EGAF00001720446 fastq.gz 3.2 GB
EGAF00001720447 fastq.gz 3.3 GB
EGAF00001720448 fastq.gz 3.2 GB
EGAF00001720449 fastq.gz 3.4 GB
EGAF00001720450 fastq.gz 2.7 GB
EGAF00001720451 fastq.gz 2.9 GB
EGAF00001720452 fastq.gz 2.3 GB
EGAF00001720453 fastq.gz 2.5 GB
EGAF00001720454 fastq.gz 2.3 GB
EGAF00001720455 fastq.gz 2.4 GB
EGAF00001720456 fastq.gz 2.6 GB
EGAF00001720457 fastq.gz 2.7 GB
EGAF00001720458 fastq.gz 2.8 GB
EGAF00001720459 fastq.gz 2.9 GB
EGAF00001720460 fastq.gz 2.8 GB
EGAF00001720461 fastq.gz 2.9 GB
EGAF00001720462 fastq.gz 3.6 GB
EGAF00001720463 fastq.gz 3.7 GB
EGAF00001720464 fastq.gz 5.3 GB
EGAF00001720465 fastq.gz 5.5 GB
EGAF00001720466 fastq.gz 2.3 GB
EGAF00001720467 fastq.gz 2.4 GB
EGAF00001720468 fastq.gz 3.9 GB
EGAF00001720469 fastq.gz 4.0 GB
EGAF00001720470 fastq.gz 3.8 GB
EGAF00001720471 fastq.gz 3.9 GB
EGAF00001720472 fastq.gz 3.3 GB
EGAF00001720473 fastq.gz 3.5 GB
EGAF00001720474 fastq.gz 3.3 GB
EGAF00001720475 fastq.gz 3.6 GB
EGAF00001720476 fastq.gz 1.3 GB
EGAF00001720477 fastq.gz 1.3 GB
EGAF00001720478 fastq.gz 1.3 GB
EGAF00001720479 fastq.gz 1.3 GB
116 Files (329.0 GB)