ICGC PCAWG Dataset: PACA-AU_PCAWG_RNA-Seq_TopHat2
ICGC PCAWG Dataset for RNA-Seq BAM aligned using TopHat2. Project: PACA-AU.
- 18/09/2017
- 81 samples
- DAC: EGAC00001000010
- HMB DUO:0000006 (version: 2021-02-23)health or medical or biomedical researchThis data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.
- NPUNCU DUO:0000018 (version: 2021-02-23)not for profit, non commercial use onlyThis data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.
- PS DUO:0000027 (version: 2021-02-23)project specific restrictionThis data use modifier indicates that use is limited to use within an approved project.
- GRU DUO:0000042 (version: 2021-02-23)general research useThis data use permission indicates that use is allowed for general research use for any research purpose.
ICGC Data Access
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001001692 | Cancer Genomics |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00001682904 | bam | 8.8 GB | ||
| EGAF00001682905 | bai | 3.7 MB | ||
| EGAF00001682906 | xml.gz | 3.7 kB | ||
| EGAF00001682907 | bam | 13.7 GB | ||
| EGAF00001682908 | bai | 4.8 MB | ||
| EGAF00001682909 | xml.gz | 3.8 kB | ||
| EGAF00001682910 | bam | 12.5 GB | ||
| EGAF00001682911 | bai | 4.5 MB | ||
| EGAF00001682912 | xml.gz | 3.8 kB | ||
| EGAF00001682913 | bam | 12.9 GB | ||
| EGAF00001682914 | bai | 4.9 MB | ||
| EGAF00001682915 | xml.gz | 3.8 kB | ||
| EGAF00001682916 | bam | 5.7 GB | ||
| EGAF00001682917 | bai | 3.7 MB | ||
| EGAF00001682918 | xml.gz | 3.8 kB | ||
| EGAF00001682919 | bam | 9.9 GB | ||
| EGAF00001682920 | bai | 4.0 MB | ||
| EGAF00001682921 | xml.gz | 3.8 kB | ||
| EGAF00001682922 | bam | 9.0 GB | ||
| EGAF00001682923 | bai | 4.7 MB | ||
| EGAF00001682924 | xml.gz | 3.8 kB | ||
| EGAF00001682925 | bam | 5.4 GB | ||
| EGAF00001682926 | bai | 3.2 MB | ||
| EGAF00001682927 | xml.gz | 3.8 kB | ||
| EGAF00001682928 | bam | 12.2 GB | ||
| EGAF00001682929 | bai | 4.5 MB | ||
| EGAF00001682930 | xml.gz | 3.8 kB | ||
| EGAF00001682931 | bam | 3.8 GB | ||
| EGAF00001682932 | bai | 2.8 MB | ||
| EGAF00001682933 | xml.gz | 3.8 kB | ||
| EGAF00001682934 | bam | 27.2 GB | ||
| EGAF00001682935 | bai | 6.3 MB | ||
| EGAF00001682936 | xml.gz | 4.0 kB | ||
| EGAF00001682937 | bam | 8.8 GB | ||
| EGAF00001682938 | bai | 4.1 MB | ||
| EGAF00001682939 | xml.gz | 3.8 kB | ||
| EGAF00001682940 | bam | 7.4 GB | ||
| EGAF00001682941 | bai | 3.5 MB | ||
| EGAF00001682942 | xml.gz | 3.8 kB | ||
| EGAF00001682943 | bam | 13.2 GB | ||
| EGAF00001682944 | bai | 3.8 MB | ||
| EGAF00001682945 | xml.gz | 3.8 kB | ||
| EGAF00001682946 | bam | 3.8 GB | ||
| EGAF00001682947 | bai | 3.1 MB | ||
| EGAF00001682948 | xml.gz | 3.8 kB | ||
| EGAF00001682949 | bam | 7.1 GB | ||
| EGAF00001682950 | bai | 3.6 MB | ||
| EGAF00001682951 | xml.gz | 3.8 kB | ||
| EGAF00001682952 | bam | 12.4 GB | ||
| EGAF00001682953 | bai | 4.4 MB | ||
| EGAF00001682954 | xml.gz | 4.0 kB | ||
| EGAF00001682955 | bam | 5.5 GB | ||
| EGAF00001682956 | bai | 3.2 MB | ||
| EGAF00001682957 | xml.gz | 3.8 kB | ||
| EGAF00001682958 | bam | 11.1 GB | ||
| EGAF00001682959 | bai | 4.2 MB | ||
| EGAF00001682960 | xml.gz | 3.8 kB | ||
| EGAF00001682961 | bam | 6.6 GB | ||
| EGAF00001682962 | bai | 3.4 MB | ||
| EGAF00001682963 | xml.gz | 3.8 kB | ||
| EGAF00001682964 | bam | 10.4 GB | ||
| EGAF00001682965 | bai | 3.7 MB | ||
| EGAF00001682966 | xml.gz | 3.8 kB | ||
| EGAF00001682967 | bam | 8.4 GB | ||
| EGAF00001682968 | bai | 4.4 MB | ||
| EGAF00001682969 | xml.gz | 3.8 kB | ||
| EGAF00001682970 | bam | 4.6 GB | ||
| EGAF00001682971 | bai | 3.2 MB | ||
| EGAF00001682972 | xml.gz | 3.8 kB | ||
| EGAF00001682973 | bam | 7.0 GB | ||
| EGAF00001682974 | bai | 3.5 MB | ||
| EGAF00001682975 | xml.gz | 3.8 kB | ||
| EGAF00001682976 | bam | 4.9 GB | ||
| EGAF00001682977 | bai | 3.3 MB | ||
| EGAF00001682978 | xml.gz | 3.8 kB | ||
| EGAF00001682979 | bam | 10.5 GB | ||
| EGAF00001682980 | bai | 4.0 MB | ||
| EGAF00001682981 | xml.gz | 3.8 kB | ||
| EGAF00001682982 | bam | 10.2 GB | ||
| EGAF00001682983 | bai | 4.0 MB | ||
| EGAF00001682984 | xml.gz | 3.8 kB | ||
| EGAF00001682985 | bam | 22.7 GB | ||
| EGAF00001682986 | bai | 5.6 MB | ||
| EGAF00001682987 | xml.gz | 3.8 kB | ||
| EGAF00001682988 | bam | 15.5 GB | ||
| EGAF00001682989 | bai | 4.7 MB | ||
| EGAF00001682990 | xml.gz | 3.8 kB | ||
| EGAF00001682991 | bam | 6.9 GB | ||
| EGAF00001682992 | bai | 3.7 MB | ||
| EGAF00001682993 | xml.gz | 3.8 kB | ||
| EGAF00001682994 | bam | 5.5 GB | ||
| EGAF00001682995 | bai | 3.2 MB | ||
| EGAF00001682996 | xml.gz | 3.8 kB | ||
| EGAF00001682997 | bam | 4.0 GB | ||
| EGAF00001682998 | bai | 2.9 MB | ||
| EGAF00001682999 | xml.gz | 3.8 kB | ||
| EGAF00001683000 | bam | 8.1 GB | ||
| EGAF00001683001 | bai | 3.7 MB | ||
| EGAF00001683002 | xml.gz | 3.8 kB | ||
| EGAF00001683003 | bam | 6.8 GB | ||
| EGAF00001683004 | bai | 3.6 MB | ||
| EGAF00001683005 | xml.gz | 3.8 kB | ||
| EGAF00001683006 | bam | 7.6 GB | ||
| EGAF00001683007 | bai | 3.1 MB | ||
| EGAF00001683008 | xml.gz | 3.8 kB | ||
| EGAF00001683009 | bam | 8.1 GB | ||
| EGAF00001683010 | bai | 3.9 MB | ||
| EGAF00001683011 | xml.gz | 3.8 kB | ||
| EGAF00001683012 | bam | 6.4 GB | ||
| EGAF00001683013 | bai | 3.7 MB | ||
| EGAF00001683014 | xml.gz | 3.8 kB | ||
| EGAF00001683015 | bam | 5.1 GB | ||
| EGAF00001683016 | bai | 3.0 MB | ||
| EGAF00001683017 | xml.gz | 3.8 kB | ||
| EGAF00001683018 | bam | 8.6 GB | ||
| EGAF00001683019 | bai | 4.1 MB | ||
| EGAF00001683020 | xml.gz | 3.8 kB | ||
| EGAF00001683021 | bam | 6.0 GB | ||
| EGAF00001683022 | bai | 3.7 MB | ||
| EGAF00001683023 | xml.gz | 3.8 kB | ||
| EGAF00001683024 | bam | 10.2 GB | ||
| EGAF00001683025 | bai | 4.0 MB | ||
| EGAF00001683026 | xml.gz | 3.8 kB | ||
| EGAF00001683027 | bam | 11.0 GB | ||
| EGAF00001683028 | bai | 4.2 MB | ||
| EGAF00001683029 | xml.gz | 3.8 kB | ||
| EGAF00001683030 | bam | 4.8 GB | ||
| EGAF00001683031 | bai | 2.8 MB | ||
| EGAF00001683032 | xml.gz | 3.8 kB | ||
| EGAF00001683033 | bam | 11.9 GB | ||
| EGAF00001683034 | bai | 4.5 MB | ||
| EGAF00001683035 | xml.gz | 3.8 kB | ||
| EGAF00001683036 | bam | 6.7 GB | ||
| EGAF00001683037 | bai | 3.6 MB | ||
| EGAF00001683038 | xml.gz | 3.8 kB | ||
| EGAF00001683039 | bam | 9.2 GB | ||
| EGAF00001683040 | bai | 3.9 MB | ||
| EGAF00001683041 | xml.gz | 3.8 kB | ||
| EGAF00001683042 | bam | 9.1 GB | ||
| EGAF00001683043 | bai | 4.4 MB | ||
| EGAF00001683044 | xml.gz | 3.8 kB | ||
| EGAF00001683045 | bam | 6.5 GB | ||
| EGAF00001683046 | bai | 3.2 MB | ||
| EGAF00001683047 | xml.gz | 3.8 kB | ||
| EGAF00001683048 | bam | 13.6 GB | ||
| EGAF00001683049 | bai | 4.9 MB | ||
| EGAF00001683050 | xml.gz | 3.8 kB | ||
| EGAF00001683051 | bam | 16.0 GB | ||
| EGAF00001683052 | bai | 5.0 MB | ||
| EGAF00001683053 | xml.gz | 3.8 kB | ||
| EGAF00001683054 | bam | 6.4 GB | ||
| EGAF00001683055 | bai | 3.4 MB | ||
| EGAF00001683056 | xml.gz | 3.8 kB | ||
| EGAF00001683057 | bam | 5.3 GB | ||
| EGAF00001683058 | bai | 3.4 MB | ||
| EGAF00001683059 | xml.gz | 3.8 kB | ||
| EGAF00001683060 | bam | 5.7 GB | ||
| EGAF00001683061 | bai | 3.6 MB | ||
| EGAF00001683062 | xml.gz | 3.8 kB | ||
| EGAF00001683063 | bam | 13.7 GB | ||
| EGAF00001683064 | bai | 4.9 MB | ||
| EGAF00001683065 | xml.gz | 3.8 kB | ||
| EGAF00001683066 | bam | 14.3 GB | ||
| EGAF00001683067 | bai | 4.1 MB | ||
| EGAF00001683068 | xml.gz | 3.8 kB | ||
| EGAF00001683069 | bam | 9.1 GB | ||
| EGAF00001683070 | bai | 4.3 MB | ||
| EGAF00001683071 | xml.gz | 3.8 kB | ||
| EGAF00001683072 | bam | 8.6 GB | ||
| EGAF00001683073 | bai | 3.7 MB | ||
| EGAF00001683074 | xml.gz | 3.8 kB | ||
| EGAF00001683075 | bam | 10.0 GB | ||
| EGAF00001683076 | bai | 4.4 MB | ||
| EGAF00001683077 | xml.gz | 3.8 kB | ||
| EGAF00001683078 | bam | 7.1 GB | ||
| EGAF00001683079 | bai | 3.5 MB | ||
| EGAF00001683080 | xml.gz | 3.8 kB | ||
| EGAF00001683081 | bam | 5.5 GB | ||
| EGAF00001683082 | bai | 3.4 MB | ||
| EGAF00001683083 | xml.gz | 3.7 kB | ||
| EGAF00001683084 | bam | 11.2 GB | ||
| EGAF00001683085 | bai | 3.9 MB | ||
| EGAF00001683086 | xml.gz | 3.8 kB | ||
| EGAF00001683087 | bam | 10.1 GB | ||
| EGAF00001683088 | bai | 4.4 MB | ||
| EGAF00001683089 | xml.gz | 3.8 kB | ||
| EGAF00001683090 | bam | 11.8 GB | ||
| EGAF00001683091 | bai | 3.9 MB | ||
| EGAF00001683092 | xml.gz | 3.8 kB | ||
| EGAF00001683093 | bam | 14.1 GB | ||
| EGAF00001683094 | bai | 4.4 MB | ||
| EGAF00001683095 | xml.gz | 3.8 kB | ||
| EGAF00001683096 | bam | 5.8 GB | ||
| EGAF00001683097 | bai | 3.4 MB | ||
| EGAF00001683098 | xml.gz | 3.8 kB | ||
| EGAF00001683099 | bam | 15.0 GB | ||
| EGAF00001683100 | bai | 4.6 MB | ||
| EGAF00001683101 | xml.gz | 3.8 kB | ||
| EGAF00001683102 | bam | 9.1 GB | ||
| EGAF00001683103 | bai | 4.0 MB | ||
| EGAF00001683104 | xml.gz | 3.8 kB | ||
| EGAF00001683105 | bam | 10.5 GB | ||
| EGAF00001683106 | bai | 4.3 MB | ||
| EGAF00001683107 | xml.gz | 3.8 kB | ||
| EGAF00001683108 | bam | 6.8 GB | ||
| EGAF00001683109 | bai | 3.4 MB | ||
| EGAF00001683110 | xml.gz | 3.8 kB | ||
| EGAF00001683111 | bam | 8.2 GB | ||
| EGAF00001683112 | bai | 4.0 MB | ||
| EGAF00001683113 | xml.gz | 3.8 kB | ||
| EGAF00001683114 | bam | 25.8 GB | ||
| EGAF00001683115 | bai | 6.3 MB | ||
| EGAF00001683116 | xml.gz | 3.8 kB | ||
| EGAF00001683117 | bam | 6.8 GB | ||
| EGAF00001683118 | bai | 3.8 MB | ||
| EGAF00001683119 | xml.gz | 3.8 kB | ||
| EGAF00001683120 | bam | 7.5 GB | ||
| EGAF00001683121 | bai | 4.1 MB | ||
| EGAF00001683122 | xml.gz | 3.8 kB | ||
| EGAF00001683123 | bam | 9.4 GB | ||
| EGAF00001683124 | bai | 4.4 MB | ||
| EGAF00001683125 | xml.gz | 3.8 kB | ||
| EGAF00001683126 | bam | 7.7 GB | ||
| EGAF00001683127 | bai | 4.2 MB | ||
| EGAF00001683128 | xml.gz | 3.8 kB | ||
| EGAF00001683129 | bam | 15.1 GB | ||
| EGAF00001683130 | bai | 4.9 MB | ||
| EGAF00001683131 | xml.gz | 4.0 kB | ||
| EGAF00001683132 | bam | 9.9 GB | ||
| EGAF00001683133 | bai | 4.2 MB | ||
| EGAF00001683134 | xml.gz | 3.8 kB | ||
| EGAF00001683135 | bam | 5.8 GB | ||
| EGAF00001683136 | bai | 3.7 MB | ||
| EGAF00001683137 | xml.gz | 3.8 kB | ||
| EGAF00001683138 | bam | 11.1 GB | ||
| EGAF00001683139 | bai | 4.3 MB | ||
| EGAF00001683140 | xml.gz | 3.8 kB | ||
| EGAF00001683141 | bam | 10.6 GB | ||
| EGAF00001683142 | bai | 4.3 MB | ||
| EGAF00001683143 | xml.gz | 3.8 kB | ||
| EGAF00001683144 | bam | 12.4 GB | ||
| EGAF00001683145 | bai | 4.7 MB | ||
| EGAF00001683146 | xml.gz | 3.8 kB | ||
| 243 Files (773.6 GB) | ||||