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High-grade meningioma sequencing data

Whole genome, whole exome, and custom panel sequencing of high-grade meningioma cohort

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High-grade meningioma data access policy

DATA ACCESS AGREEMENT These terms and conditions govern access to the managed access datasets (details of which are set out in Appendix I) to which the User Institution has requested access. The User Institution agrees to be bound by these terms and conditions. Definitions Authorised Personnel: The individuals at the User Institution to whom DFCI grants access to the Data. This includes the User, the individuals listed in Appendix II and any other individuals for whom the User Institution subsequently requests access to the Data. Details of the initial Authorised Personnel are set out in Appendix II. Data: The managed access datasets to which the User Institution has requested access. Data Producers: DFCI and the collaborators listed in Appendix I responsible for the development, organisation, and oversight of these Data. External Collaborator: A collaborator of the User, working for an institution other than the User Institution. Project: The project for which the User Institution has requested access to these Data. A description of the Project is set out in Appendix II. Publications: Includes, without limitation, articles published in print journals, electronic journals, reviews, books, posters and other written and verbal presentations of research. Research Participant: An individual whose data form part of these Data. Research Purposes: Shall mean research that is seeking to advance the understanding of genetics and genomics, including the treatment of disorders, and work on statistical methods that may be applied to such research. User: The principal investigator for the Project. User Institution(s): The Institution that has requested access to the Data. DFCI: Dana Farber Cancer Institute, as approved by the high-grade meningioma data access committee. 1. The User Institution agrees to only use these Data for the purpose of the Project (described in Appendix II) and only for Research Purposes. The User Institution further agrees that it will only use these Data for Research Purposes which are within the limitations (if any) set out in Appendix I. 2. The User Institution agrees to preserve, at all times, the confidentiality of these Data. In particular, it undertakes not to use, or attempt to use these Data to compromise or otherwise infringe the confidentiality of information on Research Participants. Without prejudice to the generality of the foregoing, the User Institution agrees to use at least the measures set out in Appendix I to protect these Data. 3. The User Institution agrees to protect the confidentiality of Research Participants in any research papers or publications that they prepare by taking all reasonable care to limit the possibility of identification. 4. The User Institution agrees not to link or combine these Data to other information or archived data available in a way that could re-identify the Research Participants, even if access to that data has been formally granted to the User Institution or is freely available without restriction. 5. The User Institution agrees only to transfer or disclose these Data, in whole or part, or any material derived from these Data, to the Authorised Personnel. Should the User Institution wish to share these Data with an External Collaborator, the External Collaborator must complete a separate application for access to these Data. 6. The User Institution agrees that the Data Producers, and all other parties involved in the creation, funding or protection of these Data: a) make no warranty or representation, express or implied as to the accuracy, quality or comprehensiveness of these Data; b) exclude to the fullest extent permitted by law all liability for actions, claims, proceedings, demands, losses (including but not limited to loss of profit), costs, awards damages and payments made by the Recipient that may arise (whether directly or indirectly) in any way whatsoever from the Recipient’s use of these Data or from the unavailability of, or break in access to, these Data for whatever reason and; c) bear no responsibility for the further analysis or interpretation of these Data. 7. The User Institution agrees to follow the Fort Lauderdale Guidelines (http://www.wellcome.ac.uk/stellent/groups/corporatesite/@policy_communications/documents/web_document/wtd003207.pdf ) and the Toronto Statement (http://www.nature.com/nature/journal/v461/n7261/full/461168a.html). This includes but is not limited to recognising the contribution of the Data Producers and including a proper acknowledgement in all reports or publications resulting from the use of these Data. 8. The User Institution agrees to follow the Publication Policy in Appendix III. This includes respecting the moratorium period for the Data Producers to publish the first peer-reviewed report describing and analysing these Data. 9. The User Institution agrees not to make intellectual property claims on these Data and not to use intellectual property protection in ways that would prevent or block access to, or use of, any element of these Data, or conclusion drawn directly from these Data. 10. The User Institution can elect to perform further research that would add intellectual and resource capital to these data and decide to obtain intellectual property rights on these downstream discoveries. In this case, the User Institution agrees to implement licensing policies that will not obstruct further research and to follow the U.S. National Institutes of Health Best Practices for the Licensing of Genomic Inventions (2005) (https://www.icgc.org/files/daco/NIH_BestPracticesLicensingGenomicInventions_2005_en.pdf ) in conformity with the Organisation for Economic Co-operation and Development Guidelines for the Licensing of the Genetic Inventions (2006) (http://www.oecd.org/science/biotech/36198812.pdf ). 11. The User Institution agrees to destroy/discard the Data held, once it is no longer used for the Project, unless obliged to retain the data for archival purposes in conformity with audit or legal requirements. 12. The User Institution will notify DFCI within 30 days of any changes or departures of Authorised Personnel. 13. The User Institution will notify DFCI prior to any significant changes to the protocol for the Project. 14. The User Institution will notify DFCI as soon as it becomes aware of a breach of the terms or conditions of this agreement. 15. DFCI may terminate this agreement by written notice to the User Institution. If this agreement terminates for any reason, the User Institution will be required to destroy any Data held, including copies and backup copies. This clause does not prevent the User Institution from retaining these data for archival purpose in conformity with audit or legal requirements. 16. The User Institution accepts that it may be necessary for the Data Producers to alter the terms of this agreement from time to time. As an example, this may include specific provisions relating to the Data required by Data Producers other than DFCI. In the event that changes are required, the Data Producers or their appointed agent will contact the User Institution to inform it of the changes and the User Institution may elect to accept the changes or terminate the agreement. 17. If requested, the User Institution will allow data security and management documentation to be inspected to verify that it is complying with the terms of this agreement. 18. The User Institution agrees to distribute a copy of these terms to the Authorised Personnel. The User Institution will procure that the Authorised Personnel comply with the terms of this agreement. 19. This agreement (and any dispute, controversy, proceedings or claim of whatever nature arising out of this agreement or its formation) shall be construed, interpreted and governed by the laws of England and Wales and shall be subject to the exclusive jurisdiction of the English courts. Agreed for User Institution Signature: Name: Title: Date: Principal Investigator I confirm that I have read and understood this Agreement. Signature: Name: Title: Date: Agreed for DFCI Signature: Name: Title: Date: APPENDIX I – DATASET DETAILS APPENDIX II ––PROJECT DETAILS APPENDIX III –– PUBLICATION POLICY APPENDIX I – DATASET DETAILS Dataset reference (EGA Study ID and Dataset Details) Name of project that created the dataset Names of other data producers/collaborators Specific limitations on areas of research Minimum protection measures required File access: Data can be held in unencrypted files on an institutional compute system, with Unix user group read/write access for one or more appropriate groups but not Unix world read/write access behind a secure firewall. Laptops holding these data should have password protected logins and screenlocks (set to lock after 5 min of inactivity). If held on USB keys or other portable hard drives, the data must be encrypted. APPENDIX II – PROJECT DETAILS (to be completed by the Requestor) Details of dataset requested i.e., EGA Study and Dataset Accession Number Brief abstract of the Project in which the Data will be used (500 words max) All Individuals who the User Institution to be named as registered users Name of Registered User Email Job Title Supervisor* All Individuals that should have an account created at the EGA Name of Registered User Email Job Title APPENDIX III – PUBLICATION POLICY DFCI intend to publish the results of their analysis of this dataset and do not consider its deposition into public databases to be the equivalent of such publications. DFCI anticipate that the dataset could be useful to other qualified researchers for a variety of purposes. However, some areas of work are subject to a publication moratorium. The publication moratorium covers any publications (including oral communications) that describe the use of the dataset. For research papers, submission for publication should not occur until 1 month after these data were first made available on the relevant hosting database, unless DFCI has provided written consent to earlier submission. In any publications based on these data, please describe how the data can be accessed, including the name of the hosting database (e.g., The European Genome-phenome Archive at the European Bioinformatics Institute) and its accession numbers (e.g., EGAS00000000029), and acknowledge its use in a form agreed by the User Institution with DFCI.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00001578235 bam 15.1 GB
EGAF00001578236 bam 9.5 GB
EGAF00001578237 bam 8.8 GB
EGAF00001578239 bam 15.2 GB
EGAF00001578240 bam 14.2 GB
EGAF00001578241 bam 17.1 GB
EGAF00001578242 bam 14.3 GB
EGAF00001578243 bam 7.5 GB
EGAF00001578244 bam 160.3 GB
EGAF00001578245 bam 172.2 GB
EGAF00001578246 bam 176.5 GB
EGAF00001578247 bam 183.8 GB
EGAF00001578248 bam 165.2 GB
EGAF00001578249 bam 156.9 GB
EGAF00001578250 bam 185.3 GB
EGAF00001578251 bam 214.3 GB
EGAF00001578252 bam 209.7 GB
EGAF00001578253 bam 168.2 GB
EGAF00001578254 bam 162.3 GB
EGAF00001578255 bam 167.6 GB
EGAF00001578256 bam 181.4 GB
EGAF00001578257 bam 198.5 GB
EGAF00001578258 bam 11.7 GB
EGAF00001578259 bam 9.5 GB
EGAF00001578260 bam 7.0 GB
EGAF00001578261 bam 7.4 GB
EGAF00001578262 bam 9.0 GB
EGAF00001578263 bam 8.2 GB
EGAF00001578264 bam 25.5 GB
EGAF00001578265 bam 21.0 GB
EGAF00001578266 bam 14.5 GB
EGAF00001578267 bam 15.5 GB
EGAF00001578268 bam 8.7 GB
EGAF00001578269 bam 146.0 GB
EGAF00001578270 bam 179.6 GB
EGAF00001578271 bam 192.3 GB
EGAF00001578272 bam 2.9 GB
EGAF00001578273 bam 2.8 GB
EGAF00001578274 bam 3.2 GB
EGAF00001578275 bam 3.2 GB
EGAF00001578276 bam 3.3 GB
EGAF00001578277 bam 2.6 GB
EGAF00001578278 bam 3.0 GB
EGAF00001578279 bam 2.7 GB
EGAF00001578280 bam 3.1 GB
EGAF00001578281 bam 3.0 GB
EGAF00001578282 bam 1.5 GB
EGAF00001578283 bam 1.5 GB
EGAF00001578284 bam 1.7 GB
EGAF00001578285 bam 1.4 GB
EGAF00001578286 bam 1.5 GB
EGAF00001578287 bam 1.5 GB
EGAF00001578288 bam 1.7 GB
EGAF00001578289 bam 1.3 GB
EGAF00001578290 bam 1.5 GB
EGAF00001578291 bam 1.5 GB
EGAF00001578292 bam 1.6 GB
EGAF00001578293 bam 1.4 GB
EGAF00001578294 bam 804.1 MB
EGAF00001578295 bam 1.7 GB
EGAF00001578296 bam 2.4 GB
EGAF00001578297 bam 2.2 GB
EGAF00001578298 bam 1.8 GB
EGAF00001578299 bam 1.8 GB
EGAF00001578300 bam 1.0 GB
EGAF00001578301 bam 1.7 GB
EGAF00001578302 bam 1.4 GB
EGAF00001578303 bam 1.3 GB
EGAF00001578304 bam 1.1 GB
EGAF00001578305 bam 929.4 MB
EGAF00001578306 bam 1.2 GB
EGAF00001578307 bam 1.4 GB
EGAF00001578308 bam 1.8 GB
EGAF00001578309 bam 1.3 GB
EGAF00001578310 bam 1.5 GB
EGAF00001578311 bam 1.2 GB
EGAF00001578312 bam 1.5 GB
EGAF00001578313 bam 1.7 GB
EGAF00001578314 bam 1.2 GB
EGAF00001578315 bam 1.2 GB
EGAF00001578316 bam 1.2 GB
EGAF00001578317 bam 1.3 GB
EGAF00001578318 bam 1.5 GB
EGAF00001578319 bam 1.3 GB
EGAF00001578320 bam 1.4 GB
EGAF00001578321 bam 1.3 GB
EGAF00001578322 bam 1.5 GB
EGAF00001578323 bam 1.4 GB
EGAF00001578324 bam 1.6 GB
EGAF00001578325 bam 1.1 GB
EGAF00001578326 bam 1.4 GB
EGAF00001578327 bam 1.3 GB
EGAF00001578328 bam 1.0 GB
EGAF00001578329 bam 1.3 GB
EGAF00001578330 bam 1.2 GB
EGAF00001578331 bam 1.3 GB
EGAF00001578332 bam 1.3 GB
EGAF00001578333 bam 1.1 GB
EGAF00001578334 bam 1.1 GB
EGAF00001578335 bam 1.2 GB
EGAF00001578336 bam 1.4 GB
EGAF00001578337 bam 1.3 GB
EGAF00001578338 bam 1.5 GB
EGAF00001578339 bam 1.5 GB
EGAF00001578340 bam 1.4 GB
EGAF00001578341 bam 1.3 GB
EGAF00001578342 bam 1.4 GB
EGAF00001578343 bam 1.4 GB
EGAF00001578344 bam 1.3 GB
EGAF00001578345 bam 1.3 GB
EGAF00001578346 bam 1.7 GB
EGAF00001578347 bam 1.4 GB
EGAF00001578348 bam 1.2 GB
EGAF00001578349 bam 1.1 GB
EGAF00001578350 bam 1.4 GB
EGAF00001578351 bam 1.7 GB
EGAF00001578352 bam 1.7 GB
EGAF00001578353 bam 1.4 GB
EGAF00001578354 bam 1.0 GB
EGAF00001578355 bam 1.2 GB
EGAF00001578356 bam 1.6 GB
EGAF00001578357 bam 9.7 GB
EGAF00001578358 bam 10.1 GB
EGAF00001578359 bam 11.0 GB
EGAF00001578360 bam 9.4 GB
EGAF00001578361 bam 13.6 GB
EGAF00001578362 bam 11.2 GB
EGAF00001578363 bam 14.2 GB
EGAF00001578364 bam 12.2 GB
EGAF00001578365 bam 12.0 GB
EGAF00001578366 bam 8.1 GB
EGAF00001578367 bam 12.4 GB
EGAF00001578368 bam 8.3 GB
EGAF00001578369 bam 16.2 GB
EGAF00001578370 bam 13.3 GB
EGAF00001578371 bam 12.3 GB
EGAF00001578372 bam 11.7 GB
EGAF00001578373 bam 18.5 GB
EGAF00001578374 bam 9.0 GB
EGAF00001578375 bam 14.2 GB
EGAF00001578376 bam 9.7 GB
EGAF00001578377 bam 9.0 GB
EGAF00001578378 bam 9.6 GB
EGAF00001578379 bam 13.0 GB
EGAF00001578380 bam 13.7 GB
EGAF00001578381 bam 11.3 GB
EGAF00001578382 bam 11.4 GB
EGAF00001578383 bam 13.7 GB
EGAF00001578384 bam 12.1 GB
EGAF00001578385 bam 7.5 GB
EGAF00001578386 bam 10.3 GB
EGAF00001578387 bam 9.7 GB
EGAF00001578388 bam 9.2 GB
EGAF00001578389 bam 9.1 GB
EGAF00001578390 bam 11.0 GB
EGAF00001578391 bam 9.5 GB
EGAF00001578392 bam 9.4 GB
EGAF00001578393 bam 11.2 GB
EGAF00001578394 bam 10.8 GB
EGAF00001578395 bam 9.5 GB
EGAF00001578396 bam 9.7 GB
EGAF00001578397 bam 9.9 GB
EGAF00001578398 bam 12.4 GB
EGAF00001578399 bam 9.0 GB
EGAF00001578400 bam 9.4 GB
EGAF00001578401 bam 10.2 GB
EGAF00001578402 bam 10.4 GB
EGAF00001578403 bam 10.0 GB
EGAF00001578404 bam 12.8 GB
EGAF00001578405 bam 11.1 GB
EGAF00001578406 bam 9.5 GB
EGAF00001578407 bam 11.5 GB
EGAF00001578408 bam 9.7 GB
EGAF00001578409 bam 16.1 GB
EGAF00001578410 bam 16.8 GB
EGAF00001578411 bam 16.4 GB
EGAF00001578412 bam 12.0 GB
EGAF00001578413 bam 9.2 GB
EGAF00001578414 bam 8.4 GB
EGAF00001578415 bam 8.7 GB
EGAF00001578416 bam 8.0 GB
EGAF00001578417 bam 8.3 GB
EGAF00001578418 bam 9.4 GB
EGAF00001578419 bam 9.6 GB
EGAF00001578420 bam 13.3 GB
EGAF00001578421 bam 16.4 GB
EGAF00001578422 bam 8.9 GB
187 Files (4.1 TB)