WGBS data (CancerLocator study) of cell-free DNA derived from human blood
The blood samples of eight lung cancer patients and one benign lung tumor patient are collected for this dataset. Blood samples were centrifuged first at 1,600 × g for 10 minutes, and then the plasma was transferred into new micro tubes and centrifuged at 16,000 × g for another 10 minutes. The plasma was collected and stored at -80⁰C. CfDNA was extracted from 5 ml plasma using the Qiagen QIAamp Circulating Nucleic Acids Kit and quantified by Qubit 3.0 Fluoromter (Thermo Fisher Scientific). Bisulfite conversion of cfDNA was performed by using EZ-DNA-Methylation-GOLD kit (Zymo Research). After that, Accel-NGS Methy-Seq DNA library kit (Swift Bioscience) was used to prepare the sequencing libraries. The DNA libraries were then sequenced with 150bp paired-end reads.
- 24/02/2017
- 9 samples
- DAC: EGAC00001000602
- Technology: HiSeq X Ten
The data usage policy (CancerLocator study) for WGBS data of cell-free DNA derived from human blood
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00001560870 | fastq.gz | 23.9 GB | ||
| EGAF00001560871 | fastq.gz | 29.7 GB | ||
| EGAF00001560872 | fastq.gz | 24.3 GB | ||
| EGAF00001560873 | fastq.gz | 29.5 GB | ||
| EGAF00001560874 | fastq.gz | 25.4 GB | ||
| EGAF00001560875 | fastq.gz | 31.1 GB | ||
| EGAF00001560876 | fastq.gz | 23.3 GB | ||
| EGAF00001560877 | fastq.gz | 27.0 GB | ||
| EGAF00001560878 | fastq.gz | 22.9 GB | ||
| EGAF00001560879 | fastq.gz | 27.3 GB | ||
| EGAF00001560880 | fastq.gz | 22.7 GB | ||
| EGAF00001560881 | fastq.gz | 27.0 GB | ||
| EGAF00001560882 | fastq.gz | 23.4 GB | ||
| EGAF00001560883 | fastq.gz | 27.6 GB | ||
| EGAF00001560884 | fastq.gz | 25.5 GB | ||
| EGAF00001560885 | fastq.gz | 31.9 GB | ||
| EGAF00001560886 | fastq.gz | 23.4 GB | ||
| EGAF00001560887 | fastq.gz | 28.3 GB | ||
| 18 Files (474.2 GB) | ||||