RNAseq SCLC Cell lines MYC
RNAseq data set (Mollaoglu et al., MYC drives progression of small cell lung cancer to a variant neuroendocrine subtype with vulnerability to Aurora kinase inhibition) RNA isolation from primary tumors and healthy lungs was performed using RNeasy Mini Kit (Qiagen) with the standard protocol. RNA was subjected to library construction with the Illumina TruSeq Stranded mRNA Sample Preparation Kit (cat# RS-122-2101, RS-122-2102) according to manufacturer’s protocol. Chemically denatured sequencing libraries (25 pM) are applied to an Illumina HiSeq v4 single read flow cell using an Illumina cBot. Hybridized molecules were clonally amplified and annealed to sequencing primers with reagents from an Illumina HiSeq SR Cluster Kit v4-cBot (GD-401-4001). Following transfer of the flowcell to an Illumina HiSeq 2500 instrument (HCSv2.2.38 and RTA v1.18.61), a 50 cycle single-read sequence run was performed using HiSeq SBS Kit v4 sequencing reagents (FC-401-4002).
- 17/02/2017
- 14 samples
- DAC: EGAC00001000064
- Technology: Illumina HiSeq 2000
Data Access Committee University of Cologne
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00001416662 | fq.gz | 4.3 GB | ||
| EGAF00001416663 | fq.gz | 4.3 GB | ||
| EGAF00001416664 | fq.gz | 5.0 GB | ||
| EGAF00001416665 | fq.gz | 4.9 GB | ||
| EGAF00001416666 | fq.gz | 4.2 GB | ||
| EGAF00001416667 | fq.gz | 4.1 GB | ||
| EGAF00001416668 | fq.gz | 4.0 GB | ||
| EGAF00001416669 | fq.gz | 4.0 GB | ||
| EGAF00001416670 | fq.gz | 4.1 GB | ||
| EGAF00001416671 | fq.gz | 4.1 GB | ||
| EGAF00001416672 | fq.gz | 3.5 GB | ||
| EGAF00001416673 | fq.gz | 3.5 GB | ||
| EGAF00001416674 | fq.gz | 4.7 GB | ||
| EGAF00001416675 | fq.gz | 4.7 GB | ||
| EGAF00001416676 | fq.gz | 4.1 GB | ||
| EGAF00001416677 | fq.gz | 4.2 GB | ||
| EGAF00001416678 | fq.gz | 4.1 GB | ||
| EGAF00001416679 | fq.gz | 4.1 GB | ||
| EGAF00001416680 | fq.gz | 4.8 GB | ||
| EGAF00001416681 | fq.gz | 4.7 GB | ||
| EGAF00001416682 | fq.gz | 4.1 GB | ||
| EGAF00001416683 | fq.gz | 4.2 GB | ||
| EGAF00001416684 | fq.gz | 4.1 GB | ||
| EGAF00001416685 | fq.gz | 4.2 GB | ||
| EGAF00001416686 | fq.gz | 4.2 GB | ||
| EGAF00001416687 | fq.gz | 4.2 GB | ||
| EGAF00001416688 | fq.gz | 4.2 GB | ||
| EGAF00001416689 | fq.gz | 4.2 GB | ||
| 28 Files (118.8 GB) | ||||