Need Help?

Bam files from Whole exome sequencing (WES, ~50x mean read depth) of metachronous bladder tumors

In this study we characterized genomic alterations in two to five metachronous bladder tumors from 29 patients initially diagnosed with early stage disease. Fourteen patients (32 tumors) had non progressive disease (NPD) and 15 patients (34 tumors) had progressive disease (PD). Whole exome sequencing (WES, ~50x mean read depth and whole transcriptome RNA-seq was performed (RNA was not advalible for 4 tumors) Data provided here consist of 122 Bam files for WES (83 Tumors and 39 blood)

Request Access

MOMA DAC Access Policy

This document specifies the policy for granting access to the European Genome-phenome Archive (EGA) secure Web based tools for managing data access permissions to the data stored in the EGA database. Access is granted to those Data Access Committee members named in this document by Paul Flicek, head of Genes, Genomes and Variation.Conditions of access:The account holder will abide by all current and future policies of the EBI for computer use as well as computer use policies of the European Molecular Biology Laboratory (EMBL), of which the EBI is a part. All EGA specific policies and standard operating procedures (SOPs) must also be followed. All applicable policies will be provided to the authorized users. Method of access:The EBI will create a personal account for the authorized person. The account username and password together with a RSA key provide access to the secure EGA infrastructure. A separate document with detailed guidelines on how to access and use these tools is provided to each account holder. The EGA help-desk provides training when needed.Review:All individuals will access to the EGA user authorization tools will be reviewed annually by Paul Flicek. Any staff changes affecting the authorized person must be provided immediately to Paul Flicek (flicek@ebi.ac.uk).Authorized Data Access Committee user:Henrik Hornshøj (hhj@ki.au.dk) and Søren Vang (vang@ki.au.dk)Department of Molecular Medicine (MOMA), Aarhus University Hospital, Brendstrupgårdsvej 100, 8200 Aarhus N, Denmark

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00001224038 bam 8.8 GB
EGAF00001224039 bam 22.6 GB
EGAF00001224040 bam 36.9 GB
EGAF00001224041 bam 14.0 GB
EGAF00001224042 bam 10.4 GB
EGAF00001224043 bam 16.4 GB
EGAF00001224044 bam 11.5 GB
EGAF00001224045 bam 11.8 GB
EGAF00001224046 bam 13.8 GB
EGAF00001224047 bam 15.3 GB
EGAF00001224048 bam 14.6 GB
EGAF00001224049 bam 18.8 GB
EGAF00001224050 bam 9.8 GB
EGAF00001224051 bam 12.9 GB
EGAF00001224052 bam 28.5 GB
EGAF00001224053 bam 19.2 GB
EGAF00001224054 bam 11.9 GB
EGAF00001224055 bam 16.4 GB
EGAF00001224056 bam 10.7 GB
EGAF00001224057 bam 24.5 GB
EGAF00001224058 bam 11.0 GB
EGAF00001224059 bam 11.6 GB
EGAF00001224060 bam 36.8 GB
EGAF00001224061 bam 12.0 GB
EGAF00001224062 bam 24.8 GB
EGAF00001224063 bam 12.4 GB
EGAF00001224064 bam 17.8 GB
EGAF00001224065 bam 13.4 GB
EGAF00001224066 bam 15.0 GB
EGAF00001224067 bam 28.8 GB
EGAF00001224068 bam 11.1 GB
EGAF00001224069 bam 16.6 GB
EGAF00001224070 bam 14.6 GB
EGAF00001224071 bam 16.4 GB
EGAF00001224072 bam 29.3 GB
EGAF00001224073 bam 15.8 GB
EGAF00001224074 bam 10.7 GB
EGAF00001224075 bam 13.1 GB
EGAF00001224076 bam 20.9 GB
EGAF00001224077 bam 11.4 GB
EGAF00001224078 bam 17.9 GB
EGAF00001224079 bam 8.7 GB
EGAF00001224080 bam 16.4 GB
EGAF00001224081 bam 12.1 GB
EGAF00001224082 bam 22.5 GB
EGAF00001224083 bam 18.1 GB
EGAF00001224084 bam 22.8 GB
EGAF00001224085 bam 11.0 GB
EGAF00001224086 bam 14.3 GB
EGAF00001224087 bam 13.5 GB
EGAF00001224088 bam 14.2 GB
EGAF00001224089 bam 36.7 GB
EGAF00001224090 bam 24.4 GB
EGAF00001224091 bam 12.7 GB
EGAF00001224093 bam 124.5 GB
EGAF00001224094 bam 26.2 GB
EGAF00001224095 bam 198.6 GB
EGAF00001224096 bam 211.8 GB
EGAF00001224097 bam 19.6 GB
EGAF00001224098 bam 10.8 GB
EGAF00001224099 bam 12.7 GB
EGAF00001224101 bam 32.6 GB
EGAF00001224102 bam 14.5 GB
EGAF00001224103 bam 20.1 GB
EGAF00001224104 bam 18.7 GB
EGAF00001224105 bam 189.5 GB
EGAF00001224106 bam 169.6 GB
EGAF00001224107 bam 209.1 GB
EGAF00001224108 bam 190.1 GB
EGAF00001224109 bam 149.7 GB
EGAF00001224110 bam 17.6 GB
EGAF00001224111 bam 159.4 GB
EGAF00001224112 bam 14.9 GB
EGAF00001224113 bam 7.9 GB
EGAF00001224114 bam 38.8 GB
EGAF00001224115 bam 18.4 GB
EGAF00001224116 bam 24.9 GB
EGAF00001224117 bam 10.4 GB
EGAF00001224118 bam 22.4 GB
EGAF00001224119 bam 110.0 GB
EGAF00001224120 bam 82.7 GB
EGAF00001224121 bam 99.1 GB
EGAF00001224122 bam 23.6 GB
EGAF00001224123 bam 19.3 GB
EGAF00001224124 bam 11.2 GB
EGAF00001224125 bam 16.7 GB
EGAF00001224126 bam 10.5 GB
EGAF00001224127 bam 11.2 GB
EGAF00001224128 bam 13.6 GB
EGAF00001224129 bam 12.3 GB
EGAF00001224131 bam 16.7 GB
EGAF00001224132 bam 17.5 GB
EGAF00001224133 bam 35.4 GB
EGAF00001224134 bam 23.2 GB
EGAF00001224135 bam 19.9 GB
EGAF00001224136 bam 29.0 GB
EGAF00001224137 bam 13.1 GB
EGAF00001224138 bam 22.5 GB
EGAF00001224139 bam 14.4 GB
EGAF00001224140 bam 11.7 GB
EGAF00001224141 bam 15.7 GB
EGAF00001224142 bam 16.9 GB
EGAF00001224143 bam 31.2 GB
EGAF00001224144 bam 11.8 GB
EGAF00001224145 bam 28.0 GB
EGAF00001224146 bam 20.2 GB
EGAF00001224147 bam 35.7 GB
EGAF00001224148 bam 18.0 GB
EGAF00001224149 bam 14.4 GB
EGAF00001224150 bam 14.7 GB
EGAF00001224151 bam 27.6 GB
EGAF00001224153 bam 29.2 GB
EGAF00001224154 bam 27.4 GB
EGAF00001224155 bam 18.2 GB
EGAF00001224156 bam 21.3 GB
EGAF00001224157 bam 21.6 GB
EGAF00001224158 bam 23.5 GB
EGAF00001224159 bam 24.2 GB
118 Files (3.8 TB)