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Whole-exome sequencing of P2RY8-CRLF2-positive ALL on Illumina HiSeq 2000, 100 bp paired-end

Genomic DNA from leukemic and remission bone marrow mononuclear cells was isolated with the QIAamp DNA Blood Extraction Kit (Qiagen, Venlo, The Netherlands). Libraries were prepared using Nextera Rapid Capture Exome Kit (Illumina, San Diego, USA). Paired-end sequencing of 100 bp reads was performed on a HiSeq 2000 (Illumina) to obtain at least a 50 x coverage.

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CCRI Data Access Agreement P2RY8-CRLF2-positive ALL

Children’s Cancer Research Institute, Vienna, Austria DATA ACCESS AGREEMENT This agreement governs the terms on which access will be granted to genome profiling data of P2RY8-CRLF2-positive acute lymphoblastic leukemia patients, which are available through the European Genomephenome Archive (EGA) and provided by the Children’s Cancer Research Institute (CCRI)/Renate Panzer- Grümayer (PI). Patient/parent consent does not cover the use of data for large-scale determination of germline variants. You are agreeing to be bound by the terms and conditions of access set out in this agreement. The terms of access set out in this agreement apply both to the User and the User’s Institution (as defined below). User Institution and User are referred to within the agreement as “You” and “Your”. DEFINITIONS * Data means all and any human genetic data (including genome, and transcriptome derived data) and phenotype data obtained from the EGA. * Data Subject means a person whose data is being shared with informed consent / ethical approval by the relevant ethics commission or institutional review board. * Data Provider means the CCRI. * EGA means the European Genome-phenome Archive, a permanent archive of controlled access data generated for biomedical research and deposited to enable data sharing. The EGA is described on the website http://www.ebi.ac.ukl/ega. * User means a researcher whose User Institution has previously completed this Data Access Agreement and has received acknowledgement of its acceptance. * User Institution means the organisation at which the User is employed, affiliated or enrolled. TERMS AND CONDITIONS In signing this Agreement: 1. You agree to use the Data only for research in the areas of biology and medicine. 2. You agree not to use the Data or any part thereof for the creation of products for sale or for any commercial purpose. 3. You agree to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. In particular, You undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 4. You agree not to transfer or disclose the Data, in whole or part, or any identifiable material derived from the Data, to others, except as necessary for data/safety monitoring or programme management. Should You wish to share the Data with a collaborator outside the same Institution, the third party must make a separate application for access to the Data. 5. You agree to use the data for the approved purpose and project described in your application; use of the data for a new purpose or project will require a new application and a new approval. 6. You accept that the providers and the funders of the Data or any part of the Data: a) bear no legal responsibility for the accuracy or comprehensiveness of the Data; and b) accept no liability for indirect, consequential, or incidental, damages or losses arising from use of the Data, or from the unavailability of, or break in access to, the Data for whatever reason. 7. You understand that any duplication, except as reasonably required to carry out Your research with the Data, or sale of all or part of the Data on any media may not be permitted. 8. You accept that this agreement will terminate immediately upon any breach of this agreement by You. Upon termination You will be required to promptly destroy any Data held. 9. You accept that it may be necessary for the Data Provider or its appointed agents to alter the terms of this agreement from time to time in order to address new concerns. In this event, the EGA or its appointed agent will contact You to inform You of any changes and You agree that Your continued use of the Data shall be dependent on the parties entering into a new version of the Agreement. 10. You accept that the Data may be protected by and subject to laws and regulations, including but not limited to applicable laws on the protection of personal data, and that You are responsible for ensuring compliance with any such applicable law. You undertake to implement or have implemented adequate technical and organizational security measures to protect the Data. 11. You agree to acknowledge in any work based in whole or part on the Data, the published paper from which the Data derives, the version of the Data, and the role of the CCRI/PI and its funders in its distribution. You agree to use the acknowledgement wording provided for the relevant Data in its publication. You will also declare in any such work that those who carried out the original analysis and collection of the Data bear no responsibility for the further analysis or interpretation of it by You. 12. This agreement shall be construed, interpreted and governed by the laws of Austria and shall be subject to the non-exclusive jurisdiction of the Austrian courts. Children's Cancer Research Institute Zimmermannplatz 10, 1090 Wien, Austria Phone: +43(1)40470-0 Fax: +43(1)40470-7150 E-mail: office@ccri.at Web: http://www.ccri.at UIDNr ATU16377105 DVR 0535940 ZVR Zahl 395401202 Director Univ. Prof. Dr. W. Holter

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00001419919 bam 16.2 GB
EGAF00001419920 bai 7.2 MB
EGAF00001419921 bam 20.9 GB
EGAF00001419922 bai 7.8 MB
EGAF00001419923 bam 27.4 GB
EGAF00001419924 bai 7.8 MB
EGAF00001419925 bam 19.9 GB
EGAF00001419926 bai 7.4 MB
EGAF00001419927 bam 16.8 GB
EGAF00001419928 bai 7.0 MB
EGAF00001419929 bam 16.1 GB
EGAF00001419930 bai 7.5 MB
EGAF00001419931 bam 19.5 GB
EGAF00001419932 bai 7.7 MB
EGAF00001419933 bam 21.7 GB
EGAF00001419934 bai 7.9 MB
EGAF00001419935 bam 17.4 GB
EGAF00001419936 bai 7.4 MB
EGAF00001419937 bam 14.8 GB
EGAF00001419938 bai 7.4 MB
EGAF00001419939 bam 18.1 GB
EGAF00001419940 bai 7.4 MB
EGAF00001419941 bam 16.1 GB
EGAF00001419942 bai 7.1 MB
EGAF00001419943 bam 20.2 GB
EGAF00001419944 bai 7.3 MB
EGAF00001419945 bam 21.3 GB
EGAF00001419946 bai 5.6 MB
EGAF00001419947 bam 15.7 GB
EGAF00001419948 bai 7.2 MB
EGAF00001419949 bam 19.8 GB
EGAF00001419950 bai 7.7 MB
EGAF00001419951 bam 20.7 GB
EGAF00001419952 bai 7.4 MB
EGAF00001419953 bam 10.0 GB
EGAF00001419954 bai 6.4 MB
EGAF00001419955 bam 16.4 GB
EGAF00001419956 bai 7.3 MB
EGAF00001419957 bam 19.6 GB
EGAF00001419958 bai 7.4 MB
EGAF00001419959 bam 15.2 GB
EGAF00001419960 bai 7.6 MB
EGAF00001419961 bam 19.0 GB
EGAF00001419962 bai 7.7 MB
EGAF00001419963 bam 17.8 GB
EGAF00001419964 bai 7.4 MB
EGAF00001419965 bam 15.8 GB
EGAF00001419966 bai 7.1 MB
EGAF00001419967 bam 15.7 GB
EGAF00001419968 bai 7.2 MB
EGAF00001419969 bam 20.1 GB
EGAF00001419970 bai 7.7 MB
EGAF00001419971 bam 16.0 GB
EGAF00001419972 bai 7.1 MB
EGAF00001419973 bam 15.8 GB
EGAF00001419974 bai 7.0 MB
EGAF00001419975 bam 16.7 GB
EGAF00001419976 bai 7.3 MB
EGAF00001419977 bam 19.9 GB
EGAF00001419978 bai 7.7 MB
EGAF00001419979 bam 17.5 GB
EGAF00001419980 bai 7.5 MB
EGAF00001419981 bam 17.7 GB
EGAF00001419982 bai 7.5 MB
EGAF00001419983 bam 17.2 GB
EGAF00001419984 bai 7.3 MB
EGAF00001419985 bam 18.0 GB
EGAF00001419986 bai 7.3 MB
EGAF00001419987 bam 20.3 GB
EGAF00001419988 bai 7.6 MB
EGAF00001419989 bam 15.7 GB
EGAF00001419990 bai 7.0 MB
EGAF00001419991 bam 25.0 GB
EGAF00001419992 bai 8.0 MB
EGAF00001419993 bam 21.6 GB
EGAF00001419994 bai 7.8 MB
EGAF00001419995 bam 15.9 GB
EGAF00001419996 bai 7.5 MB
EGAF00001419997 bam 18.0 GB
EGAF00001419998 bai 7.6 MB
EGAF00001419999 bam 16.7 GB
EGAF00001420000 bai 7.5 MB
EGAF00001420001 bam 20.4 GB
EGAF00001420002 bai 7.7 MB
EGAF00001420003 bam 20.6 GB
EGAF00001420004 bai 7.7 MB
EGAF00001420005 bam 13.3 GB
EGAF00001420006 bai 7.3 MB
EGAF00001420007 bam 9.0 GB
EGAF00001420008 bai 6.5 MB
EGAF00001420009 bam 17.0 GB
EGAF00001420010 bai 7.4 MB
EGAF00001420011 bam 16.1 GB
EGAF00001420012 bai 7.2 MB
EGAF00001420013 bam 22.7 GB
EGAF00001420014 bai 5.7 MB
EGAF00001420015 bam 20.8 GB
EGAF00001420016 bai 7.8 MB
EGAF00001420017 bam 21.0 GB
EGAF00001420018 bai 7.4 MB
EGAF00001420019 bam 16.7 GB
EGAF00001420020 bai 7.6 MB
EGAF00001420021 bam 20.1 GB
EGAF00001420022 bai 7.4 MB
EGAF00001420023 bam 14.9 GB
EGAF00001420024 bai 7.4 MB
EGAF00001420025 bam 23.3 GB
EGAF00001420026 bai 8.0 MB
EGAF00001420027 bam 9.0 GB
EGAF00001420028 bai 6.6 MB
EGAF00001420029 bam 18.0 GB
EGAF00001420030 bai 7.3 MB
EGAF00001420031 bam 18.1 GB
EGAF00001420032 bai 7.3 MB
EGAF00001420033 bam 18.1 GB
EGAF00001420034 bai 7.2 MB
EGAF00001420035 bam 17.5 GB
EGAF00001420036 bai 7.2 MB
EGAF00001420037 bam 18.1 GB
EGAF00001420038 bai 7.3 MB
EGAF00001420039 bam 18.3 GB
EGAF00001420040 bai 7.3 MB
EGAF00001420041 bam 19.3 GB
EGAF00001420042 bai 7.2 MB
EGAF00001420043 bam 16.0 GB
EGAF00001420044 bai 7.0 MB
EGAF00001420045 bam 19.2 GB
EGAF00001420046 bai 7.5 MB
EGAF00001420047 bam 18.0 GB
EGAF00001420048 bai 7.6 MB
EGAF00001420049 bam 17.9 GB
EGAF00001420050 bai 7.3 MB
EGAF00001420051 bam 9.9 GB
EGAF00001420052 bai 6.5 MB
EGAF00001420053 bam 7.8 GB
EGAF00001420054 bai 6.4 MB
EGAF00001420055 bam 19.9 GB
EGAF00001420056 bai 7.7 MB
EGAF00001420057 bam 16.9 GB
EGAF00001420058 bai 7.6 MB
EGAF00001420059 bam 19.5 GB
EGAF00001420060 bai 7.8 MB
EGAF00001420061 bam 13.2 GB
EGAF00001420062 bai 6.9 MB
EGAF00001420063 bam 14.3 GB
EGAF00001420064 bai 6.9 MB
EGAF00001420065 bam 19.8 GB
EGAF00001420066 bai 7.8 MB
EGAF00001420067 bam 10.5 GB
EGAF00001420068 bai 6.6 MB
EGAF00001420069 bam 16.1 GB
EGAF00001420070 bai 7.1 MB
EGAF00001420071 bam 9.7 GB
EGAF00001420072 bai 7.1 MB
EGAF00001420073 bam 14.4 GB
EGAF00001420074 bai 7.4 MB
EGAF00001420075 bam 20.5 GB
EGAF00001420076 bai 7.3 MB
EGAF00001420077 bam 14.6 GB
EGAF00001420078 bai 6.9 MB
EGAF00001420079 bam 15.5 GB
EGAF00001420080 bai 7.0 MB
EGAF00001420081 bam 13.9 GB
EGAF00001420082 bai 7.0 MB
EGAF00001420083 bam 16.4 GB
EGAF00001420084 bai 7.3 MB
EGAF00001420085 bam 21.7 GB
EGAF00001420086 bai 7.9 MB
EGAF00001420087 bam 18.9 GB
EGAF00001420088 bai 7.4 MB
EGAF00001420089 bam 11.2 GB
EGAF00001420090 bai 6.7 MB
EGAF00001420091 bam 22.0 GB
EGAF00001420092 bai 7.8 MB
EGAF00001420093 bam 14.4 GB
EGAF00001420094 bai 7.4 MB
EGAF00001420095 bam 23.7 GB
EGAF00001420096 bai 7.9 MB
EGAF00001420097 bam 16.8 GB
EGAF00001420098 bai 7.0 MB
EGAF00001420099 bam 8.5 GB
EGAF00001420100 bai 6.4 MB
EGAF00001420101 bam 14.7 GB
EGAF00001420102 bai 7.0 MB
EGAF00001420103 bam 18.0 GB
EGAF00001420104 bai 7.5 MB
EGAF00001420105 bam 15.5 GB
EGAF00001420106 bai 7.1 MB
EGAF00001420107 bam 19.8 GB
EGAF00001420108 bai 7.7 MB
EGAF00001420109 bam 17.8 GB
EGAF00001420110 bai 7.4 MB
EGAF00001420111 bam 16.6 GB
EGAF00001420112 bai 7.4 MB
EGAF00001420113 bam 17.8 GB
EGAF00001420114 bai 5.4 MB
EGAF00001420115 bam 19.2 GB
EGAF00001420116 bai 7.4 MB
EGAF00001420117 bam 19.3 GB
EGAF00001420118 bai 7.5 MB
EGAF00001420119 bam 15.3 GB
EGAF00001420120 bai 6.9 MB
EGAF00001420121 bam 17.1 GB
EGAF00001420122 bai 7.2 MB
EGAF00001420123 bam 19.9 GB
EGAF00001420124 bai 7.7 MB
EGAF00001420125 bam 21.1 GB
EGAF00001420126 bai 7.7 MB
EGAF00001420127 bam 20.5 GB
EGAF00001420128 bai 7.7 MB
210 Files (1.8 TB)