ICGC PCAWG Dataset: LINC-JP_PCAWG_WGS_BWA
ICGC PCAWG Dataset for WGS BAM aligned using BWA MEM. Project: LINC-JP.
- 14/09/2016
- 62 samples
- DAC: EGAC00001000010
- HMB DUO:0000006 (version: 2021-02-23)health or medical or biomedical researchThis data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.
- NPUNCU DUO:0000018 (version: 2021-02-23)not for profit, non commercial use onlyThis data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.
- PS DUO:0000027 (version: 2021-02-23)project specific restrictionThis data use modifier indicates that use is limited to use within an approved project.
- GRU DUO:0000042 (version: 2021-02-23)general research useThis data use permission indicates that use is allowed for general research use for any research purpose.
ICGC Data Access
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001001692 | Cancer Genomics |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00001143342 | bam | 140.2 GB | ||
| EGAF00001143343 | bai | 23.6 MB | ||
| EGAF00001143344 | xml.gz | 9.0 kB | ||
| EGAF00001143345 | bam | 214.1 GB | ||
| EGAF00001143346 | bai | 45.9 MB | ||
| EGAF00001143347 | xml.gz | 5.7 kB | ||
| EGAF00001144346 | bam | 181.1 GB | ||
| EGAF00001144347 | bai | 41.1 MB | ||
| EGAF00001144348 | xml.gz | 5.4 kB | ||
| EGAF00001144358 | bam | 142.0 GB | ||
| EGAF00001144359 | bai | 24.6 MB | ||
| EGAF00001144360 | xml.gz | 5.4 kB | ||
| EGAF00001144361 | bam | 155.6 GB | ||
| EGAF00001144362 | bai | 35.2 MB | ||
| EGAF00001144363 | xml.gz | 5.4 kB | ||
| EGAF00001144370 | bam | 144.2 GB | ||
| EGAF00001144371 | bai | 29.3 MB | ||
| EGAF00001144372 | xml.gz | 5.5 kB | ||
| EGAF00001144373 | bam | 104.9 GB | ||
| EGAF00001144374 | bai | 29.5 MB | ||
| EGAF00001144375 | xml.gz | 5.2 kB | ||
| EGAF00001144376 | bam | 145.6 GB | ||
| EGAF00001144377 | bai | 35.0 MB | ||
| EGAF00001144378 | xml.gz | 5.4 kB | ||
| EGAF00001144379 | bam | 161.6 GB | ||
| EGAF00001144380 | bai | 42.1 MB | ||
| EGAF00001144381 | xml.gz | 5.4 kB | ||
| EGAF00001144382 | bam | 137.6 GB | ||
| EGAF00001144383 | bai | 28.5 MB | ||
| EGAF00001144384 | xml.gz | 5.4 kB | ||
| EGAF00001145480 | bam | 130.6 GB | ||
| EGAF00001145481 | bai | 22.6 MB | ||
| EGAF00001145482 | xml.gz | 5.5 kB | ||
| EGAF00001145486 | bam | 132.2 GB | ||
| EGAF00001145487 | bai | 23.4 MB | ||
| EGAF00001145488 | xml.gz | 5.4 kB | ||
| EGAF00001145996 | bam | 415.4 GB | ||
| EGAF00001145997 | bai | 73.4 MB | ||
| EGAF00001145998 | xml.gz | 7.4 kB | ||
| EGAF00001168010 | bam | 148.1 GB | ||
| EGAF00001168011 | bai | 11.8 MB | ||
| EGAF00001168012 | xml.gz | 23.4 kB | ||
| EGAF00001168013 | bam | 106.0 GB | ||
| EGAF00001168014 | bai | 10.9 MB | ||
| EGAF00001168015 | xml.gz | 18.5 kB | ||
| EGAF00001171769 | bam | 203.6 GB | ||
| EGAF00001171770 | bai | 35.2 MB | ||
| EGAF00001171771 | xml.gz | 18.3 kB | ||
| EGAF00001171772 | bam | 147.7 GB | ||
| EGAF00001171773 | bai | 12.2 MB | ||
| EGAF00001171774 | xml.gz | 17.7 kB | ||
| EGAF00001171775 | bam | 185.5 GB | ||
| EGAF00001171776 | bai | 37.2 MB | ||
| EGAF00001171777 | xml.gz | 6.0 kB | ||
| EGAF00001171778 | bam | 354.8 GB | ||
| EGAF00001171779 | bai | 78.5 MB | ||
| EGAF00001171781 | xml.gz | 7.7 kB | ||
| EGAF00001171782 | bam | 174.7 GB | ||
| EGAF00001171783 | bai | 53.7 MB | ||
| EGAF00001171784 | xml.gz | 8.0 kB | ||
| EGAF00001171785 | bam | 126.8 GB | ||
| EGAF00001171786 | bai | 13.7 MB | ||
| EGAF00001171787 | xml.gz | 8.5 kB | ||
| EGAF00001171788 | bam | 147.6 GB | ||
| EGAF00001171789 | bai | 21.5 MB | ||
| EGAF00001171790 | xml.gz | 7.9 kB | ||
| EGAF00001171791 | bam | 151.0 GB | ||
| EGAF00001171792 | bai | 33.8 MB | ||
| EGAF00001171793 | xml.gz | 5.5 kB | ||
| EGAF00001171794 | bam | 170.5 GB | ||
| EGAF00001171795 | bai | 41.5 MB | ||
| EGAF00001171796 | xml.gz | 14.8 kB | ||
| EGAF00001171797 | bam | 210.5 GB | ||
| EGAF00001171798 | bai | 52.5 MB | ||
| EGAF00001171799 | xml.gz | 5.7 kB | ||
| EGAF00001171800 | bam | 177.4 GB | ||
| EGAF00001171801 | bai | 32.6 MB | ||
| EGAF00001171802 | xml.gz | 12.9 kB | ||
| EGAF00001171803 | bam | 204.3 GB | ||
| EGAF00001171804 | bai | 43.6 MB | ||
| EGAF00001171805 | xml.gz | 14.1 kB | ||
| EGAF00001171806 | bam | 154.4 GB | ||
| EGAF00001171807 | bai | 31.8 MB | ||
| EGAF00001171808 | xml.gz | 12.3 kB | ||
| EGAF00001171809 | bam | 135.3 GB | ||
| EGAF00001171810 | bai | 23.6 MB | ||
| EGAF00001171811 | xml.gz | 5.4 kB | ||
| EGAF00001171812 | bam | 150.8 GB | ||
| EGAF00001171813 | bai | 31.0 MB | ||
| EGAF00001171814 | xml.gz | 12.7 kB | ||
| EGAF00001171815 | bam | 208.0 GB | ||
| EGAF00001171816 | bai | 34.1 MB | ||
| EGAF00001171817 | xml.gz | 6.2 kB | ||
| EGAF00001171818 | bam | 227.2 GB | ||
| EGAF00001171819 | bai | 48.5 MB | ||
| EGAF00001171820 | xml.gz | 5.8 kB | ||
| EGAF00001171821 | bam | 234.1 GB | ||
| EGAF00001171822 | bai | 37.4 MB | ||
| EGAF00001171823 | xml.gz | 17.6 kB | ||
| EGAF00001171824 | bam | 376.1 GB | ||
| EGAF00001171825 | bai | 83.9 MB | ||
| EGAF00001171826 | xml.gz | 7.6 kB | ||
| EGAF00001171827 | bam | 158.3 GB | ||
| EGAF00001171828 | bai | 34.1 MB | ||
| EGAF00001171829 | xml.gz | 8.1 kB | ||
| EGAF00001171830 | bam | 189.3 GB | ||
| EGAF00001171831 | bai | 37.7 MB | ||
| EGAF00001171832 | xml.gz | 5.8 kB | ||
| EGAF00001171833 | bam | 189.3 GB | ||
| EGAF00001171834 | bai | 37.8 MB | ||
| EGAF00001171835 | xml.gz | 5.7 kB | ||
| EGAF00001171836 | bam | 213.7 GB | ||
| EGAF00001171837 | bai | 44.7 MB | ||
| EGAF00001171838 | xml.gz | 17.1 kB | ||
| EGAF00001171839 | bam | 187.0 GB | ||
| EGAF00001171840 | bai | 41.6 MB | ||
| EGAF00001171841 | xml.gz | 5.6 kB | ||
| EGAF00001171842 | bam | 160.4 GB | ||
| EGAF00001171843 | bai | 38.0 MB | ||
| EGAF00001171844 | xml.gz | 5.5 kB | ||
| EGAF00001171845 | bam | 178.9 GB | ||
| EGAF00001171846 | bai | 57.4 MB | ||
| EGAF00001171847 | xml.gz | 7.1 kB | ||
| EGAF00001171848 | bam | 117.3 GB | ||
| EGAF00001171849 | bai | 22.3 MB | ||
| EGAF00001171850 | xml.gz | 5.5 kB | ||
| EGAF00001171851 | bam | 153.5 GB | ||
| EGAF00001171852 | bai | 36.2 MB | ||
| EGAF00001171853 | xml.gz | 5.5 kB | ||
| EGAF00001171854 | bam | 155.9 GB | ||
| EGAF00001171855 | bai | 28.8 MB | ||
| EGAF00001171856 | xml.gz | 5.4 kB | ||
| EGAF00001171857 | bam | 140.1 GB | ||
| EGAF00001171858 | bai | 19.9 MB | ||
| EGAF00001171859 | xml.gz | 7.4 kB | ||
| EGAF00001171860 | bam | 136.3 GB | ||
| EGAF00001171861 | bai | 26.8 MB | ||
| EGAF00001171862 | xml.gz | 5.4 kB | ||
| EGAF00001171863 | bam | 163.8 GB | ||
| EGAF00001171864 | bai | 14.5 MB | ||
| EGAF00001171865 | xml.gz | 19.1 kB | ||
| EGAF00001171866 | bam | 221.8 GB | ||
| EGAF00001171867 | bai | 44.6 MB | ||
| EGAF00001171868 | xml.gz | 17.9 kB | ||
| EGAF00001171869 | bam | 102.3 GB | ||
| EGAF00001171870 | bai | 10.4 MB | ||
| EGAF00001171871 | xml.gz | 14.6 kB | ||
| EGAF00001171872 | bam | 128.0 GB | ||
| EGAF00001171873 | bai | 29.4 MB | ||
| EGAF00001171874 | xml.gz | 11.0 kB | ||
| EGAF00001171875 | bam | 180.6 GB | ||
| EGAF00001171876 | bai | 30.1 MB | ||
| EGAF00001171877 | xml.gz | 15.2 kB | ||
| EGAF00001171878 | bam | 192.2 GB | ||
| EGAF00001171879 | bai | 41.2 MB | ||
| EGAF00001171880 | xml.gz | 5.9 kB | ||
| EGAF00001171881 | bam | 219.4 GB | ||
| EGAF00001171882 | bai | 42.6 MB | ||
| EGAF00001171883 | xml.gz | 6.0 kB | ||
| EGAF00001171884 | bam | 210.1 GB | ||
| EGAF00001171885 | bai | 38.7 MB | ||
| EGAF00001171886 | xml.gz | 5.8 kB | ||
| EGAF00001171887 | bam | 262.3 GB | ||
| EGAF00001171888 | bai | 53.2 MB | ||
| EGAF00001171889 | xml.gz | 19.1 kB | ||
| EGAF00001171890 | bam | 251.3 GB | ||
| EGAF00001171891 | bai | 33.9 MB | ||
| EGAF00001171892 | xml.gz | 24.1 kB | ||
| EGAF00001171893 | bam | 145.8 GB | ||
| EGAF00001171894 | bai | 31.0 MB | ||
| EGAF00001171895 | xml.gz | 10.9 kB | ||
| EGAF00001171896 | bam | 173.1 GB | ||
| EGAF00001171897 | bai | 26.6 MB | ||
| EGAF00001171898 | xml.gz | 5.9 kB | ||
| EGAF00001171899 | bam | 333.7 GB | ||
| EGAF00001171900 | bai | 55.6 MB | ||
| EGAF00001171901 | xml.gz | 7.1 kB | ||
| EGAF00001171902 | bam | 231.4 GB | ||
| EGAF00001171903 | bai | 47.5 MB | ||
| EGAF00001171904 | xml.gz | 5.8 kB | ||
| EGAF00001171905 | bam | 190.4 GB | ||
| EGAF00001171906 | bai | 44.3 MB | ||
| EGAF00001171907 | xml.gz | 15.8 kB | ||
| EGAF00001171908 | bam | 210.8 GB | ||
| EGAF00001171909 | bai | 33.5 MB | ||
| EGAF00001171910 | xml.gz | 6.0 kB | ||
| 186 Files (11.4 TB) | ||||