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Additional RNA-seq, ChIP-seq, and ATAC-seq files for PCGP SJERG

This dataset contains RNA-seq, ATAC-seq, and ChIP-seq samples from the SJERG cohort. We applied ChIP-Seq for Dux4 on two B-cell ALL cell-lines(REH, Nalm6) along with INPUT. ATAC-Seq on two B-cell ALL cell-lines(REH, Nalm6) and xenograft of a B-cell ALL patient(ERG000016).

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DAC to obtain datasets submitted by St. Jude Children's Research Hospital - Washington University Pediatric Cancer Genome Project

This document refers to a data set, which has been submitted to the European Genome Archive (EGA) for the restricted access by legitimate academic institutions that have agreed to comply with the terms of a Data Access Agreement drafted by the St. Jude Children's Research Hospital - Washington University Pediatric Cancer Genome Project Steering Committee. There are a number of steps that a researcher must take to obtain access to this data and the process is overseen by our Data Access Committee, called the St. Jude Children's Research Hospital - Washington University Pediatric Cancer Genome Project Steering Committee. For an overview of the guidelines and information concerning data access, such as general principles, application procedure, and assessment criteria, please visit http://explore.pediatriccancergenomeproject.org/dataAccess/GuidelinesAndInformation.pdf. For the data access agreement or an application, please visit http://explore.pediatriccancergenomeproject.org/dataAccess/ApplicationForm.pdf. For all other inquiries, please email PCGP_data_request@stjude.org. We can confirm that this submission is consistent with the informed consent of the participants of the study or has been granted ethical approval and is in accordance with the applicable laws and regulations.

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00001280496 bam 27.0 GB
EGAF00001280497 bam 5.6 GB
EGAF00001280498 bam 8.2 GB
EGAF00001280499 bam 2.2 GB
EGAF00001280500 bam 2.2 GB
EGAF00001280501 bam 11.3 GB
EGAF00001280502 bam 5.7 GB
EGAF00001280503 bam 3.5 GB
EGAF00001280504 bam 5.8 GB
EGAF00001280505 bam 2.2 GB
EGAF00001280506 bam 2.3 GB
EGAF00001280507 bam 2.1 GB
EGAF00001280510 bam 3.1 GB
EGAF00001280511 bam 3.7 GB
EGAF00001280512 bam 5.0 GB
EGAF00001280513 bam 4.9 GB
EGAF00001280514 bam 4.8 GB
EGAF00001280515 bam 4.9 GB
EGAF00001280516 bam 4.9 GB
EGAF00001280517 bam 4.9 GB
EGAF00001280518 bam 4.9 GB
EGAF00001280519 bam 2.6 GB
EGAF00001280520 bam 3.2 GB
EGAF00001280521 bam 4.5 GB
EGAF00001280522 bam 4.5 GB
EGAF00001280523 bam 4.5 GB
EGAF00001280524 bam 4.5 GB
EGAF00001280525 bam 4.5 GB
EGAF00001280526 bam 4.5 GB
EGAF00001280527 bam 4.5 GB
EGAF00001280531 bam 29.4 GB
31 Files (185.8 GB)