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Whole-exome sequencing of BCP HD ALL on Illumina HiSeq 2000, 100 bp paired-end

Genomic DNA from leukemic and remission bone marrow mononuclear cells was isolated with the QIAamp DNA Blood Extraction Kit (Qiagen, Venlo, The Netherlands). Libraries were prepared with the Illumina TruSeq DNA Sample Prep and TruSeq Exome Enrichment Kits (Illumina, San Diego, CA, USA) according to the manufacturer's recommendations. 100 bp paired-end sequencing was performed on a HiSeq 2000 (Illumina) to about 80x coverage.

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CCRI Data Access Agreement HD ALL

Children’s Cancer Research Institute, Vienna, Austria DATA ACCESS AGREEMENT This agreement governs the terms on which access will be granted to genome profiling data of highhyperdiploid acute lymphoblastic leukemia patients, which are available through the European Genomephenome Archive (EGA) and provided by the Children’s Cancer Research Institute (CCRI)/Renate Panzer- Grümayer (PI). Patient/parent consent does not cover the use of data for large-scale determination of germline variants. You are agreeing to be bound by the terms and conditions of access set out in this agreement. The terms of access set out in this agreement apply both to the User and the User’s Institution (as defined below). User Institution and User are referred to within the agreement as “You” and “Your”. DEFINITIONS * Data means all and any human genetic data (including genome, and transcriptome derived data) and phenotype data obtained from the EGA. * Data Subject means a person whose data is being shared with informed consent / ethical approval by the relevant ethics commission or institutional review board. * Data Provider means the CCRI. * EGA means the European Genome-phenome Archive, a permanent archive of controlled access data generated for biomedical research and deposited to enable data sharing. The EGA is described on the website http://www.ebi.ac.ukl/ega. * User means a researcher whose User Institution has previously completed this Data Access Agreement and has received acknowledgement of its acceptance. * User Institution means the organisation at which the User is employed, affiliated or enrolled. TERMS AND CONDITIONS In signing this Agreement: 1. You agree to use the Data only for research in the areas of biology and medicine. 2. You agree not to use the Data or any part thereof for the creation of products for sale or for any commercial purpose. 3. You agree to preserve, at all times, the confidentiality of information and Data pertaining to Data Subjects. In particular, You undertake not to use, or attempt to use the Data to compromise or otherwise infringe the confidentiality of information on Data Subjects and their right to privacy. 4. You agree not to transfer or disclose the Data, in whole or part, or any identifiable material derived from the Data, to others, except as necessary for data/safety monitoring or programme management. Should You wish to share the Data with a collaborator outside the same Institution, the third party must make a separate application for access to the Data. 5. You agree to use the data for the approved purpose and project described in your application; use of the data for a new purpose or project will require a new application and a new approval. 6. You accept that the providers and the funders of the Data or any part of the Data: a) bear no legal responsibility for the accuracy or comprehensiveness of the Data; and b) accept no liability for indirect, consequential, or incidental, damages or losses arising from use of the Data, or from the unavailability of, or break in access to, the Data for whatever reason. 7. You understand that any duplication, except as reasonably required to carry out Your research with the Data, or sale of all or part of the Data on any media may not be permitted. 8. You accept that this agreement will terminate immediately upon any breach of this agreement by You. Upon termination You will be required to promptly destroy any Data held. 9. You accept that it may be necessary for the Data Provider or its appointed agents to alter the terms of this agreement from time to time in order to address new concerns. In this event, the EGA or its appointed agent will contact You to inform You of any changes and You agree that Your continued use of the Data shall be dependent on the parties entering into a new version of the Agreement. 10. You accept that the Data may be protected by and subject to laws and regulations, including but not limited to applicable laws on the protection of personal data, and that You are responsible for ensuring compliance with any such applicable law. You undertake to implement or have implemented adequate technical and organizational security measures to protect the Data. 11. You agree to acknowledge in any work based in whole or part on the Data, the published paper from which the Data derives, the version of the Data, and the role of the CCRI/PI and its funders in its distribution. You agree to use the acknowledgement wording provided for the relevant Data in its publication. You will also declare in any such work that those who carried out the original analysis and collection of the Data bear no responsibility for the further analysis or interpretation of it by You. 12. This agreement shall be construed, interpreted and governed by the laws of Austria and shall be subject to the non-exclusive jurisdiction of the Austrian courts. Children's Cancer Research Institute Zimmermannplatz 10, 1090 Wien, Austria Phone: +43(1)40470-0 Fax: +43(1)40470-7150 E-mail: office@ccri.at Web: http://www.ccri.at UIDNr ATU16377105 DVR 0535940 ZVR Zahl 395401202 Director Univ. Prof. Dr. W. Holter

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00001281483 bam 53.6 GB
EGAF00001281484 bai 6.6 MB
EGAF00001281485 bam 57.6 GB
EGAF00001281486 bai 6.7 MB
EGAF00001281487 bam 44.2 GB
EGAF00001281488 bai 6.6 MB
EGAF00001281489 bam 53.1 GB
EGAF00001281490 bai 6.8 MB
EGAF00001281491 bam 19.9 GB
EGAF00001281492 bai 5.5 MB
EGAF00001281493 bam 29.1 GB
EGAF00001281494 bai 5.4 MB
EGAF00001281495 bam 57.4 GB
EGAF00001281496 bai 6.7 MB
EGAF00001281497 bam 12.8 GB
EGAF00001281498 bai 4.9 MB
EGAF00001281499 bam 28.1 GB
EGAF00001281500 bai 5.8 MB
EGAF00001281501 bam 21.1 GB
EGAF00001281502 bai 5.8 MB
EGAF00001281503 bam 45.4 GB
EGAF00001281504 bai 6.7 MB
EGAF00001281505 bam 17.4 GB
EGAF00001281506 bai 4.9 MB
EGAF00001281507 bam 48.3 GB
EGAF00001281508 bai 6.7 MB
EGAF00001281509 bam 51.2 GB
EGAF00001281510 bai 6.8 MB
EGAF00001281511 bam 66.5 GB
EGAF00001281512 bai 6.8 MB
EGAF00001281513 bam 66.2 GB
EGAF00001281514 bai 6.6 MB
EGAF00001281515 bam 48.8 GB
EGAF00001281516 bai 6.7 MB
EGAF00001281517 bam 19.6 GB
EGAF00001281518 bai 5.2 MB
EGAF00001281519 bam 68.8 GB
EGAF00001281520 bai 7.0 MB
EGAF00001281521 bam 45.5 GB
EGAF00001281522 bai 6.7 MB
EGAF00001281523 bam 50.4 GB
EGAF00001281524 bai 6.6 MB
EGAF00001281525 bam 67.1 GB
EGAF00001281526 bam 15.8 GB
EGAF00001281527 bai 5.2 MB
EGAF00001281528 bam 52.4 GB
EGAF00001281529 bam 38.9 GB
EGAF00001281530 bai 6.7 MB
EGAF00001281531 bam 37.5 GB
EGAF00001281532 bai 6.4 MB
EGAF00001281533 bam 49.8 GB
EGAF00001281534 bai 6.7 MB
EGAF00001281535 bam 23.9 GB
EGAF00001281536 bai 5.2 MB
EGAF00001281537 bam 34.7 GB
EGAF00001281538 bai 5.7 MB
EGAF00001281539 bam 15.9 GB
EGAF00001281540 bai 5.7 MB
EGAF00001281541 bam 23.7 GB
EGAF00001281542 bai 6.3 MB
EGAF00001281543 bam 52.2 GB
EGAF00001281544 bai 7.1 MB
EGAF00001281545 bam 55.0 GB
EGAF00001281546 bai 6.8 MB
EGAF00001281547 bam 52.8 GB
EGAF00001281548 bai 6.7 MB
EGAF00001281549 bam 64.2 GB
EGAF00001281550 bai 6.9 MB
EGAF00001281551 bam 62.3 GB
EGAF00001281552 bai 6.9 MB
EGAF00001281553 bam 57.9 GB
EGAF00001281554 bai 6.7 MB
EGAF00001281555 bam 56.5 GB
EGAF00001281556 bai 7.1 MB
EGAF00001281557 bam 59.7 GB
EGAF00001281558 bam 22.9 GB
EGAF00001281559 bai 5.6 MB
EGAF00001281560 bam 61.1 GB
EGAF00001281561 bai 6.8 MB
EGAF00001281562 bam 64.2 GB
EGAF00001281563 bai 6.9 MB
EGAF00001281564 bam 55.5 GB
EGAF00001281565 bai 6.6 MB
EGAF00001281566 bam 20.0 GB
EGAF00001281567 bai 6.1 MB
EGAF00001281568 bam 55.0 GB
EGAF00001281569 bai 6.7 MB
EGAF00001281570 bam 49.6 GB
EGAF00001281571 bai 6.6 MB
EGAF00001281572 bam 51.2 GB
EGAF00001281573 bam 48.1 GB
EGAF00001281574 bai 6.6 MB
EGAF00001281575 bam 57.9 GB
EGAF00001281576 bai 6.7 MB
EGAF00001281577 bam 14.8 GB
EGAF00001281578 bai 5.3 MB
EGAF00001281579 bam 44.8 GB
EGAF00001281580 bai 6.5 MB
EGAF00001281581 bam 34.6 GB
EGAF00001281582 bai 6.5 MB
EGAF00001281583 bam 32.5 GB
EGAF00001281584 bai 5.6 MB
EGAF00001281585 bam 43.6 GB
EGAF00001281586 bai 6.6 MB
EGAF00001281587 bam 47.3 GB
EGAF00001281588 bam 46.8 GB
EGAF00001281589 bai 7.0 MB
EGAF00001281590 bam 43.3 GB
108 Files (2.5 TB)