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Thirty cutaneous SCC WES tumour samples with matched normal

Thirty cutaneous SCC WES tumour samples with matched normal include 20 samples from South et al. JID and 10 new samples. These 30 samples has been used to support the findings in the TGFb Nature Communications paper (DOI: 10.1038/ncomms12493). They are also a part of the ongoing study of cSCC genomic landscape of 40 cSCC samples in total.

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Data sharing policy for Cutaneous SCC genomic landscape project (UK)

European Genome-Phenome Archive c/o European Bioinformatics Institute Wellcome Trust Genome Campus Hinxton Cambridge CB10 1SD United Kingdom To whom it may concern, This document refers to the studies, EGAS00001001892 and EGAS00001002612, which have been submitted to the European Genome Archive (EGA) for the restricted access by legitimate academic institutions that have agreed to comply with the terms of a Data Access Agreement drafted by Cutaneous SCC genomic landscape project (UK) EGAC00001000516. There are a number of steps that a researcher must take to obtain access to this data and the process is overseen by our Data Access Committee, called Cutaneous SCC genomic landscape project (UK), contact Dr Gareth Inman, email g.j.inman@dundee.ac.uk or Prof Irene Leigh, email I.M.Leigh@dundee.ac.uk Please be advised that Dr Jun Wang, j.a.wang@qmul.ac.uk, is authorized to upload data to the EGA for archiving and distribution as part of your submission process, which will enable approved researchers to have encrypted access to the data. We can confirm that this submission is consistent with the informed consent of the participants of the study or has been granted ethical approval and is in accordance with the applicable laws and regulations. Yours Sincerely, Gareth Inman Irene Leigh Division of Cancer Research Jacqui Wood Cancer Centre University of Dundee James Arrott Drive Ninewells Hospital And Medical School Dundee DD1 9SY

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00001228346 bam 17.8 GB
EGAF00001228347 bam 16.8 GB
EGAF00001228348 bam 20.8 GB
EGAF00001228349 bam 16.7 GB
EGAF00001228350 bam 20.7 GB
EGAF00001228351 bam 20.5 GB
EGAF00001228352 bam 12.2 GB
EGAF00001228353 bam 12.7 GB
EGAF00001228354 bam 19.8 GB
EGAF00001228355 bam 18.5 GB
EGAF00001228356 bam 5.1 GB
EGAF00001228357 bam 5.1 GB
EGAF00001228358 bam 9.7 GB
EGAF00001228359 bam 15.6 GB
EGAF00001228360 bam 16.1 GB
EGAF00001228361 bam 12.8 GB
EGAF00001228362 bam 12.2 GB
EGAF00001228363 bam 9.6 GB
EGAF00001228364 bam 14.3 GB
EGAF00001228365 bam 13.9 GB
EGAF00001228366 bam 13.5 GB
EGAF00001228367 bam 11.1 GB
EGAF00001228368 bam 15.0 GB
EGAF00001228369 bam 10.6 GB
EGAF00001228370 bam 11.8 GB
EGAF00001228371 bam 19.9 GB
EGAF00001228372 bam 14.7 GB
EGAF00001228373 bam 12.1 GB
EGAF00001228374 bam 13.5 GB
EGAF00001228375 bam 9.3 GB
EGAF00001228376 bam 17.5 GB
EGAF00001228377 bam 15.9 GB
EGAF00001228378 bam 10.0 GB
EGAF00001228379 bam 18.6 GB
EGAF00001228380 bam 15.5 GB
EGAF00001228381 bam 12.0 GB
EGAF00001228382 bam 14.0 GB
EGAF00001228383 bam 16.0 GB
EGAF00001228384 bam 11.8 GB
EGAF00001228385 bam 13.2 GB
EGAF00001228386 bam 11.8 GB
EGAF00001228387 bam 11.2 GB
EGAF00001228388 bam 5.8 GB
EGAF00001228389 bam 3.6 GB
EGAF00001228390 bam 11.0 GB
EGAF00001228391 bam 9.1 GB
EGAF00001228392 bam 13.6 GB
EGAF00001228393 bam 8.4 GB
EGAF00001228394 bam 10.1 GB
EGAF00001228395 bam 9.8 GB
EGAF00001228396 bam 12.7 GB
EGAF00001228397 bam 16.5 GB
EGAF00001228398 bam 12.4 GB
EGAF00001228399 bam 10.8 GB
EGAF00001228400 bam 6.9 GB
EGAF00001228401 bam 4.9 GB
EGAF00001228402 bam 6.3 GB
EGAF00001228403 bam 4.9 GB
EGAF00001228404 bam 18.3 GB
EGAF00001228405 bam 18.3 GB
60 Files (773.2 GB)