Analysis of tumor periphery and center-specific mutations in renal cell carcinoma
Renal cell carcinoma (RCC) is a genomically heterogeneous tumor. In the present project, the question whether intratumoral heterogeneity follows a zonal pattern indicating spatial niches was addressed. Whole exome sequencing of 16 paired samples from tumor periphery and center revealed a number of region-specific functional SNVs and Indels. Therefore, RCCs are not composed of evenly admixed tumor cells but show topological differences in their clonal composition.
- 23/08/2016
- 16 samples
- DAC: EGAC00001000470
- Technology: Illumina HiSeq 2500
- GRU-CC DUO:0000005 (version: 2019-01-07)general research use and clinical careThis data use limitation indicates that use is allowed for health/medical/biomedical purposes and other biological research, including the study of population origins or ancestry.
- RU DUO:0000014 (version: 2019-01-07)research use onlyThis data use limitation indicates that use is limited to research purposes (e.g., does not include its use in clinical care).
- NPUNCU DUO:0000018 (version: 2019-01-07)not for profit, non commercial use onlyThis data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.
- PUB DUO:0000019 (version: 2019-01-07)publication requiredThis data use modifier indicates that requestor agrees to make results of studies using the data available to the larger scientific community.
- COL DUO:0000020 (version: 2019-01-07)collaboration requiredThis data use modifier indicates that the requestor must agree to collaboration with the primary study investigator(s).
- US DUO:0000026 (version: 2019-01-07)user specific restrictionThis data use modifier indicates that use is limited to use by approved users.
- PS DUO:0000027 (version: 2019-01-07)project specific restrictionThis data use modifier indicates that use is limited to use within an approved project.
- IS DUO:0000028 (version: 2019-01-07)institution specific restrictionThis data use modifier indicates that use is limited to use within an approved institution.
- RTN DUO:0000029 (version: 2019-01-07)return to database or resourceThis data use modifier indicates that the requestor must return derived/enriched data to the database/resource.
Data Access Agreement MUO
Human genetic data access agreement for institutionsBetween:(1) The Section of Molecular Urooncology ("MUO") of the Department of Urology of the University of Heidelberg School of Medicine and(2) [INSERT INSTITUTION DETAILS] (the “Recipient”).In response to the Recipient's request for access to the Data (as defined below), MUOand the Recipient agree as follows:1 Definitions1.1 “Analysis of tumor periphery and center-specific mutations in renal cell carcinoma” shall mean the project undertakenat the MUO to identify genetic sequencevariants and mutations relevant to the development of intratumoral heterogeneity;1.2 “Data” shall mean all and any human genetic data obtained from theMUO including the Data Subjects’ age, sex and tumour pathology. 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The Recipientagrees that before it gives any Registered User access to Data, it shall first showthe Registered User a copy of this Agreement and shall inform the RegisteredUser that he or she must comply with the obligations contained in this Agreementand sign up to the provisions of this Agreement in the form set out at the end ofthis Agreement. The Recipient shall provide MUO with a copy of the RegisteredUser’s acceptance form within thirty (30) days of the date of acceptance by theRegistered User.5.3 The Recipient agrees that it shall only give Registered Users that are notResearchers (including but not limited to students or new researchers to the field) access to the Data if they are supervised by a Researcher who will takeresponsibility for such Registered Users’ use of the Data.5.4 MUO reserves the right to request and inspect data security andmanagement documentation to ensure the adequacy of data protectionmeasures in countries that have no national laws comparable to that pertaining inthe European Economic Area (EEA).6 Errors6.1 The Recipient agrees to notify the MUO of any errors detected in theData.7 Data reissue7.1 The Recipient accepts that Data will be reissued from time to time, withsuitable versioning. If Data is reissued at the request of sample donors and/or asthe result of other ethical scrutiny, the Recipient agrees to destroy all earlierversions of the Data.8 Intellectual Property8.1 The Recipient recognises that nothing in this Agreement shall operate totransfer to the Recipient or its Registered Users any Intellectual Property rights inor relating to the Data.8.2 The Recipient and its Registered Users shall have the right to developIntellectual Property based on comparisons with their own data.9 Publications9.1 The Recipient agrees to acknowledge in any work based in whole or parton the Data, the published paper from which the Data derives, the version of theData, and the role of the MUO and its funders in its distribution. The Recipientagrees to use the acknowledgement wording provided for the relevant Data in itspublication. The Recipient will also declare in any such work that those whocarried out the original analysis and collection of the Data bear no responsibilityfor the further analysis or interpretation of it by the Recipient.10 Termination of Agreement10.1 This Agreement will terminate immediately upon any breach of theprovisions of this Agreement by the Recipient or by the Recipient’s RegisteredUsers.10.2 The Recipient accepts that the changing ethical framework of humangenetic research may lead to: (i) alteration to the provisions of this Agreement, inwhich case the Recipient may accept such alterations or terminate thisAgreement; or (ii) the withdrawal of this Agreement in extreme circumstances.10.3 Either party shall have the right to terminate this Agreement withimmediate effect upon giving written notice of termination to the other party.10.4 In the event that this Agreement is terminated in accordance with thisClause 10 the Recipient shall return or destroy all Data at the direction of MUO.11 Costs11.1 The Recipient acknowledges that MUO shall incur costs in providing theData to the Recipient, including but not limited to administrative costs and thecost of obtaining appropriate data storage devices. The Recipient agrees to pay,on the request of MUO, such reasonable costs as MUO may incur in providing theData, within thirty (30) days of MUO making such a request for payment.12 Legal statement12.1 The Recipient acknowledges that MUO and all other parties involved inthe creation, funding or protection of the Data:(a) make no warranty or representation, express or implied asto the accuracy, quality or comprehensiveness of the Data; and(b) exclude to the fullest extent permitted by law all liability foractions, claims, proceedings, demands, losses (including but not limited toloss of profit), costs, awards damages and payments made by theRecipient that may arise (whether directly or indirectly) in any waywhatsoever from the Recipient’s use of the Data, or from the unavailabilityof, or break in access to the Data for whatever reason.12.2 The Recipient understands that all the Data is protected by copyright andother intellectual property rights, such that duplication or sale of all of or part ofthe Data on any media is not permitted under any circumstances, except with theprior written consent of MUO.13 Governing Law13.1 This Agreement (and any dispute, controversy, proceedings or claim ofwhatever nature arising out of this Agreement or its formation) shall beconstrued, interpreted and governed by the laws of Germany and shallbe subject to the exclusive jurisdiction of the German courts.AGREED by the parties through their authorised signatoriesMUOAuthorised Signature:Name:Title:Date:Recipient:Recipient Name:Address:Telephone No:Email:Authorised Signature:Name:Title:Date:Registered Users:The Registered Users acknowledge the contents of this Agreement and agree tocomply with the obligations herein. For the avoidance of doubt the RegisteredUsers are not a party to this Agreement.Signature:Name:Title:Date:Email:Signature:Name:Title:Date:Email:Please send completed forms to:Stefan DuensingSection of Molecular UrooncologyUniversity of HeidelbergIm Neuenheimer Feld 517D-69120 Heidelberg, GermanyMUO complies with the requirements of the Data Protection Act 1998 with regard to thecollection, storage, processing and disclosure of personal information and is committedto upholding the Act's core Data Protection Principles.Information collected under the Agreement will be used for the purposes of maintainingthe Agreement, and may be used for statistical reporting.
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
Study ID | Study Title | Study Type |
---|---|---|
EGAS00001001784 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
ID | File Type | Size | Located in | |
---|---|---|---|---|
EGAF00001179274 | fastq.bz2 | 756.3 MB | ||
EGAF00001179275 | fastq.bz2 | 737.1 MB | ||
EGAF00001179276 | fastq.bz2 | 1.6 GB | ||
EGAF00001179277 | fastq.bz2 | 1.6 GB | ||
EGAF00001179278 | fastq.bz2 | 892.6 MB | ||
EGAF00001179279 | fastq.bz2 | 835.5 MB | ||
EGAF00001179280 | fastq.bz2 | 856.9 MB | ||
EGAF00001179281 | fastq.bz2 | 837.8 MB | ||
EGAF00001179282 | fastq.bz2 | 797.7 MB | ||
EGAF00001179283 | fastq.bz2 | 767.2 MB | ||
EGAF00001179284 | fastq.bz2 | 876.3 MB | ||
EGAF00001179285 | fastq.bz2 | 829.7 MB | ||
EGAF00001179286 | fastq.bz2 | 737.4 MB | ||
EGAF00001179287 | fastq.bz2 | 694.4 MB | ||
EGAF00001179288 | fastq.bz2 | 942.0 MB | ||
EGAF00001179289 | fastq.bz2 | 899.9 MB | ||
EGAF00001179290 | fastq.bz2 | 931.5 MB | ||
EGAF00001179291 | fastq.bz2 | 954.2 MB | ||
EGAF00001179292 | fastq.bz2 | 891.2 MB | ||
EGAF00001179293 | fastq.bz2 | 885.0 MB | ||
EGAF00001179294 | fastq.bz2 | 903.1 MB | ||
EGAF00001179295 | fastq.bz2 | 840.8 MB | ||
EGAF00001179296 | fastq.bz2 | 958.3 MB | ||
EGAF00001179297 | fastq.bz2 | 980.9 MB | ||
EGAF00001179358 | fastq.bz2 | 1.0 GB | ||
EGAF00001179359 | fastq.bz2 | 985.6 MB | ||
EGAF00001179360 | fastq.bz2 | 962.4 MB | ||
EGAF00001179361 | fastq.bz2 | 926.0 MB | ||
EGAF00001179362 | fastq.bz2 | 1.0 GB | ||
EGAF00001179363 | fastq.bz2 | 1.0 GB | ||
EGAF00001179364 | fastq.bz2 | 922.3 MB | ||
EGAF00001179365 | fastq.bz2 | 918.0 MB | ||
32 Files (29.7 GB) |