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CMML NGS data collection from Gustave Roussy

In this dataset are the data from :- 17 patients studied by WGS- 49 patients studied by WES- 9 (/49) patients studied by RNASeq at 2 time points- the same 9 patients studied by ERRBS at 2 time points

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Gustave Roussy CMML Collection DAP

European Genome-phenome ArchiveEuropean Bioinformatics Institute European Molecular Biology LaboratoryWellcome Trust Genome CampusHinxton, Cambridge, CB10 1SDUnited KingdomGustave Roussy CMML Collection DAC EGAC00001000342This document specifies the policy for granting access to the European Genome-phenome Archive (EGA) secure Web based tools for managing data access permissions to the data stored in the EGA database. Access is granted to those Data Access Committee members named in this document by Paul Flicek, head of Genes, Genomes and Variation.Conditions of access:The account holder will abide by all current and future policies of the EBI for computer use as well as computer use policies of the European Molecular Biology Laboratory (EMBL), of which the EBI is a part. All EGA specific policies and standard operating procedures (SOPs) must also be followed. All applicable policies will be provided to the authorized users. Method of access:The EBI will create a personal account for the authorized person. The account username and password together with a RSA key provide access to the secure EGA infrastructure. A separate document with detailed guidelines on how to access and use these tools is provided to each account holder. The EGA helpdesk provides training when needed.Review:All individuals access to the EGA user authorization tools will be reviewed annually by Paul Flicek. Any staff changes affecting the authorized person must be provided immediately to Paul Flicek (flicek@ebi.ac.uk).Authorized Data Access Committee user:Jane MerlevedeGustave RoussyINSERM U1170114 rue Edouard VaillantF-94805 Villejuif , Francejane.merlevede@gmail.comSignature of authorized user indicating that this policy has been read and understood.Supervisor of Authorized user:Eric Solary, MDGustave RoussyINSERM U1170114 rue Edouard VaillantF-94805 Villejuif, Franceeric.solary@gustaveroussy.frEric Solary

Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.

Study ID Study Title Study Type
Other

This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.

ID File Type Size Located in
EGAF00000901102 fastq.bz2 6.6 GB
EGAF00000901103 fastq.bz2 6.5 GB
EGAF00000901104 fastq.bz2 7.0 GB
EGAF00000901105 fastq.bz2 7.0 GB
EGAF00000901106 fastq.bz2 4.6 GB
EGAF00000901107 fastq.bz2 4.5 GB
EGAF00000901108 fastq.bz2 5.6 GB
EGAF00000901109 fastq.bz2 5.4 GB
EGAF00000901110 fastq.bz2 5.4 GB
EGAF00000901111 fastq.bz2 5.2 GB
EGAF00000901112 fastq.bz2 5.8 GB
EGAF00000901113 fastq.bz2 5.5 GB
EGAF00000901114 fastq.bz2 5.7 GB
EGAF00000901115 fastq.bz2 5.7 GB
EGAF00000901116 fastq.bz2 5.9 GB
EGAF00000901117 fastq.bz2 5.9 GB
EGAF00000901118 fastq.bz2 5.6 GB
EGAF00000901119 fastq.bz2 5.6 GB
EGAF00000901120 fastq.bz2 4.1 GB
EGAF00000901121 fastq.bz2 4.1 GB
EGAF00000901122 fastq.bz2 5.4 GB
EGAF00000901123 fastq.bz2 5.5 GB
EGAF00000901124 fastq.bz2 6.1 GB
EGAF00000901125 fastq.bz2 6.1 GB
EGAF00000901126 fastq.bz2 4.6 GB
EGAF00000901127 fastq.bz2 4.7 GB
EGAF00000901128 fastq.bz2 4.1 GB
EGAF00000901129 fastq.bz2 4.2 GB
EGAF00000901130 fastq.bz2 3.9 GB
EGAF00000901131 fastq.bz2 4.0 GB
EGAF00000901132 fastq.bz2 6.2 GB
EGAF00000901133 fastq.bz2 6.3 GB
EGAF00000901134 fastq.bz2 7.8 GB
EGAF00000901135 fastq.bz2 7.8 GB
EGAF00000901136 fastq.bz2 7.1 GB
EGAF00000901137 fastq.bz2 7.2 GB
EGAF00000901138 fastq.bz2 14.9 GB
EGAF00000901139 fastq.bz2 15.2 GB
EGAF00000901140 fastq.bz2 4.4 GB
EGAF00000901141 fastq.bz2 4.4 GB
EGAF00000901142 fastq.bz2 4.3 GB
EGAF00000901143 fastq.bz2 4.4 GB
EGAF00000901144 fastq.bz2 3.5 GB
EGAF00000901145 fastq.bz2 3.6 GB
EGAF00000901146 fastq.bz2 4.7 GB
EGAF00000901147 fastq.bz2 4.6 GB
EGAF00000901148 fastq.bz2 4.5 GB
EGAF00000901149 fastq.bz2 4.6 GB
EGAF00000901150 fastq.bz2 7.2 GB
EGAF00000901151 fastq.bz2 7.3 GB
EGAF00000901152 fastq.bz2 4.1 GB
EGAF00000901153 fastq.bz2 4.4 GB
EGAF00000901154 fastq.bz2 6.4 GB
EGAF00000901155 fastq.bz2 6.8 GB
EGAF00000901156 fastq.bz2 6.2 GB
EGAF00000901157 fastq.bz2 6.2 GB
EGAF00000901158 fastq.bz2 6.2 GB
EGAF00000901159 fastq.bz2 6.1 GB
EGAF00000901160 fastq.bz2 3.7 GB
EGAF00000901161 fastq.bz2 3.5 GB
EGAF00000901162 fastq.bz2 3.6 GB
EGAF00000901163 fastq.bz2 3.3 GB
EGAF00000901164 fastq.bz2 4.6 GB
EGAF00000901165 fastq.bz2 4.6 GB
EGAF00000901166 fastq.bz2 4.1 GB
EGAF00000901167 fastq.bz2 4.2 GB
EGAF00000901168 fastq.gz 6.5 GB
EGAF00000901169 fastq.gz 6.6 GB
EGAF00000901170 fastq.gz 7.8 GB
EGAF00000901171 fastq.gz 8.0 GB
EGAF00000901172 fastq.gz 7.2 GB
EGAF00000901173 fastq.gz 7.4 GB
EGAF00000901174 fastq.gz 2.7 GB
EGAF00000901175 fastq.gz 2.8 GB
EGAF00000901176 fastq.gz 2.9 GB
EGAF00000901177 fastq.gz 3.0 GB
EGAF00000901178 fastq.gz 2.0 GB
EGAF00000901179 fastq.gz 2.1 GB
EGAF00000901180 fastq.gz 2.1 GB
EGAF00000901181 fastq.gz 2.3 GB
EGAF00000901182 fastq.gz 2.0 GB
EGAF00000901183 fastq.gz 2.1 GB
EGAF00000901184 fastq.gz 8.2 GB
EGAF00000901185 fastq.gz 8.4 GB
EGAF00000901186 fastq.gz 8.2 GB
EGAF00000901187 fastq.gz 8.4 GB
EGAF00000901188 fastq.gz 7.5 GB
EGAF00000901189 fastq.gz 7.7 GB
EGAF00000901190 fastq.gz 3.4 GB
EGAF00000901191 fastq.gz 3.4 GB
EGAF00000901192 fastq.gz 2.2 GB
EGAF00000901193 fastq.gz 2.2 GB
EGAF00000901194 fastq.gz 2.6 GB
EGAF00000901195 fastq.gz 2.6 GB
EGAF00000901196 fastq.gz 2.0 GB
EGAF00000901197 fastq.gz 2.0 GB
EGAF00000901198 fastq.gz 2.5 GB
EGAF00000901199 fastq.gz 2.5 GB
EGAF00000901200 fastq.gz 2.8 GB
EGAF00000901201 fastq.gz 2.8 GB
EGAF00000901202 fastq.gz 2.7 GB
EGAF00000901203 fastq.gz 2.7 GB
EGAF00000901204 fastq.gz 12.6 GB
EGAF00000901205 fastq.gz 12.6 GB
EGAF00000901206 fastq.gz 3.6 GB
EGAF00000901207 fastq.gz 3.6 GB
EGAF00000901208 fastq.gz 4.0 GB
EGAF00000901209 fastq.gz 4.0 GB
EGAF00000901210 fastq.gz 5.3 GB
EGAF00000901211 fastq.gz 5.4 GB
EGAF00000901212 fastq.gz 5.5 GB
EGAF00000901213 fastq.gz 5.6 GB
EGAF00000901214 fastq.gz 6.4 GB
EGAF00000901215 fastq.gz 6.5 GB
EGAF00000901216 fastq.gz 4.3 GB
EGAF00000901217 fastq.gz 4.4 GB
EGAF00000901218 fastq.gz 4.4 GB
EGAF00000901219 fastq.gz 4.5 GB
EGAF00000901220 fastq.gz 5.7 GB
EGAF00000901221 fastq.gz 5.8 GB
EGAF00000901222 fastq.gz 6.5 GB
EGAF00000901223 fastq.gz 6.7 GB
EGAF00000901224 fastq.gz 3.2 GB
EGAF00000901225 fastq.gz 3.3 GB
EGAF00000901226 fastq.gz 4.8 GB
EGAF00000901227 fastq.gz 4.8 GB
EGAF00000901228 fastq.gz 3.6 GB
EGAF00000901229 fastq.gz 3.6 GB
EGAF00000901230 fastq.gz 5.2 GB
EGAF00000901231 fastq.gz 5.2 GB
EGAF00000901232 fastq.gz 3.7 GB
EGAF00000901233 fastq.gz 3.7 GB
EGAF00000901234 fastq.gz 4.8 GB
EGAF00000901235 fastq.gz 4.9 GB
EGAF00000901236 fastq.gz 4.0 GB
EGAF00000901237 fastq.gz 4.0 GB
EGAF00000901238 fastq.gz 3.2 GB
EGAF00000901239 fastq.gz 3.2 GB
EGAF00000901240 fastq.gz 4.3 GB
EGAF00000901241 fastq.gz 4.3 GB
EGAF00000901242 fastq.gz 4.3 GB
EGAF00000901243 fastq.gz 4.3 GB
EGAF00000901244 fastq.bz2 3.1 GB
EGAF00000901245 fastq.bz2 3.1 GB
EGAF00000901246 fastq.bz2 3.0 GB
EGAF00000901247 fastq.bz2 3.0 GB
EGAF00000901248 fastq.bz2 5.4 GB
EGAF00000901249 fastq.bz2 5.4 GB
EGAF00000901250 fastq.gz 4.1 GB
EGAF00000901251 fastq.gz 4.1 GB
EGAF00000901252 fastq.bz2 3.8 GB
EGAF00000901253 fastq.bz2 3.8 GB
EGAF00000901254 fastq.bz2 3.2 GB
EGAF00000901255 fastq.bz2 3.2 GB
EGAF00000901256 fastq.gz 4.4 GB
EGAF00000901257 fastq.gz 4.4 GB
EGAF00000901258 fastq.gz 6.9 GB
EGAF00000901259 fastq.gz 7.0 GB
EGAF00000901260 fastq.gz 5.3 GB
EGAF00000901261 fastq.gz 5.4 GB
EGAF00000901262 fastq.gz 5.9 GB
EGAF00000901263 fastq.gz 6.1 GB
EGAF00000901264 fastq.gz 6.1 GB
EGAF00000901265 fastq.gz 6.3 GB
EGAF00000901266 fastq.gz 4.9 GB
EGAF00000901267 fastq.gz 4.9 GB
EGAF00000901268 fastq.gz 4.4 GB
EGAF00000901269 fastq.gz 4.4 GB
EGAF00000901270 fastq.gz 5.9 GB
EGAF00000901271 fastq.gz 5.9 GB
EGAF00000901272 fastq.gz 4.0 GB
EGAF00000901273 fastq.gz 4.0 GB
EGAF00000901274 fastq.gz 3.4 GB
EGAF00000901275 fastq.gz 3.4 GB
EGAF00000901276 fastq.gz 3.4 GB
EGAF00000901277 fastq.gz 3.5 GB
EGAF00000901278 fastq.gz 3.5 GB
EGAF00000901279 fastq.gz 3.6 GB
EGAF00000901280 fastq.gz 2.4 GB
EGAF00000901281 fastq.gz 2.5 GB
EGAF00000901282 fastq.gz 3.3 GB
EGAF00000901283 fastq.gz 3.3 GB
EGAF00000901284 fastq.gz 4.9 GB
EGAF00000901285 fastq.gz 5.1 GB
EGAF00000901286 fastq.gz 2.7 GB
EGAF00000901287 fastq.gz 2.8 GB
EGAF00000901288 fastq.gz 6.2 GB
EGAF00000901289 fastq.gz 6.3 GB
EGAF00000901290 fastq.gz 4.1 GB
EGAF00000901291 fastq.gz 4.2 GB
EGAF00000901292 fastq.bz2 5.6 GB
EGAF00000901293 fastq.bz2 5.6 GB
EGAF00000901294 fastq.gz 5.0 GB
EGAF00000901295 fastq.gz 5.2 GB
EGAF00000901296 fastq.gz 3.9 GB
EGAF00000901297 fastq.gz 4.0 GB
EGAF00000901298 fastq.bz2 5.3 GB
EGAF00000901299 fastq.bz2 5.3 GB
EGAF00000901300 fastq.gz 4.5 GB
EGAF00000901301 fastq.gz 4.6 GB
EGAF00000901302 fastq.gz 3.7 GB
EGAF00000901303 fastq.gz 3.8 GB
EGAF00000901304 fastq.gz 4.2 GB
EGAF00000901305 fastq.gz 4.3 GB
EGAF00000901306 fastq.gz 5.1 GB
EGAF00000901307 fastq.gz 5.2 GB
EGAF00000901308 fastq.gz 4.9 GB
EGAF00000901309 fastq.gz 5.0 GB
EGAF00000901310 fastq.bz2 3.1 GB
EGAF00000901311 fastq.bz2 3.2 GB
EGAF00000901312 fastq.bz2 3.9 GB
EGAF00000901313 fastq.bz2 4.0 GB
EGAF00000901314 fastq.bz2 4.5 GB
EGAF00000901315 fastq.bz2 4.6 GB
EGAF00000901316 fastq.bz2 4.7 GB
EGAF00000901317 fastq.bz2 4.8 GB
EGAF00000901318 fastq.bz2 3.6 GB
EGAF00000901319 fastq.bz2 3.6 GB
EGAF00000901320 fastq.bz2 3.2 GB
EGAF00000901321 fastq.bz2 3.2 GB
EGAF00000901322 fastq.bz2 3.3 GB
EGAF00000901323 fastq.bz2 3.4 GB
EGAF00000901324 fastq.gz 5.2 GB
EGAF00000901325 fastq.gz 5.3 GB
EGAF00000901326 fastq.bz2 3.3 GB
EGAF00000901327 fastq.bz2 3.4 GB
EGAF00000901328 fastq.gz 2.8 GB
EGAF00000901329 fastq.gz 2.8 GB
EGAF00000901330 fastq.bz2 3.4 GB
EGAF00000901331 fastq.bz2 3.4 GB
EGAF00000901332 fastq.bz2 4.0 GB
EGAF00000901333 fastq.bz2 4.1 GB
EGAF00000901334 fastq.bz2 3.3 GB
EGAF00000901335 fastq.bz2 3.4 GB
EGAF00000901336 fastq.bz2 3.6 GB
EGAF00000901337 fastq.bz2 3.6 GB
EGAF00000901338 fastq.gz 4.0 GB
EGAF00000901339 fastq.gz 4.1 GB
EGAF00000901340 fastq.bz2 2.8 GB
EGAF00000901341 fastq.bz2 2.8 GB
EGAF00000901342 fastq.bz2 3.3 GB
EGAF00000901343 fastq.bz2 3.4 GB
EGAF00000901344 fastq.bz2 3.1 GB
EGAF00000901345 fastq.bz2 2.8 GB
EGAF00000901346 fastq.bz2 4.2 GB
EGAF00000901347 fastq.bz2 3.8 GB
EGAF00000901348 fastq.bz2 3.1 GB
EGAF00000901349 fastq.bz2 2.8 GB
EGAF00000901350 fastq.bz2 4.0 GB
EGAF00000901351 fastq.bz2 3.7 GB
EGAF00000901352 fastq.bz2 3.5 GB
EGAF00000901353 fastq.bz2 3.4 GB
EGAF00000901354 fastq.bz2 2.6 GB
EGAF00000901355 fastq.bz2 2.6 GB
EGAF00000901356 fastq.bz2 6.8 GB
EGAF00000901357 fastq.bz2 6.7 GB
EGAF00000901358 fastq.bz2 4.6 GB
EGAF00000901359 fastq.bz2 4.5 GB
EGAF00000901360 fastq.bz2 8.6 GB
EGAF00000901361 fastq.bz2 8.3 GB
EGAF00000901362 fastq.bz2 5.3 GB
EGAF00000901363 fastq.bz2 5.2 GB
EGAF00000901364 fastq.bz2 7.4 GB
EGAF00000901365 fastq.bz2 7.2 GB
EGAF00000901366 fastq.bz2 2.3 GB
EGAF00000901367 fastq.bz2 2.3 GB
EGAF00000901368 fastq.bz2 2.2 GB
EGAF00000901369 fastq.bz2 2.2 GB
EGAF00000901370 fastq.bz2 8.3 GB
EGAF00000901371 fastq.bz2 8.0 GB
EGAF00000901372 fastq.bz2 7.4 GB
EGAF00000901373 fastq.bz2 7.1 GB
EGAF00000901374 fastq.bz2 3.6 GB
EGAF00000901375 fastq.bz2 3.2 GB
EGAF00000901376 fastq.bz2 3.8 GB
EGAF00000901377 fastq.bz2 3.4 GB
EGAF00000901378 fastq.bz2 8.4 GB
EGAF00000901379 fastq.bz2 8.2 GB
EGAF00000901380 fastq.bz2 7.8 GB
EGAF00000901381 fastq.bz2 7.6 GB
EGAF00000901382 fastq.bz2 7.5 GB
EGAF00000901383 fastq.bz2 7.4 GB
EGAF00000901384 fastq.bz2 4.8 GB
EGAF00000901385 fastq.bz2 4.4 GB
EGAF00000901386 fastq.bz2 3.0 GB
EGAF00000901387 fastq.bz2 2.7 GB
EGAF00000901388 fastq.bz2 28.3 GB
EGAF00000901389 fastq.bz2 29.3 GB
EGAF00000901390 fastq.bz2 28.9 GB
EGAF00000901391 fastq.bz2 29.8 GB
EGAF00000901392 fastq.bz2 27.1 GB
EGAF00000901393 fastq.bz2 28.6 GB
EGAF00000901394 fastq.bz2 28.4 GB
EGAF00000901395 fastq.bz2 29.6 GB
EGAF00000901396 fastq.bz2 32.8 GB
EGAF00000901397 fastq.bz2 33.5 GB
EGAF00000901398 fastq.bz2 28.4 GB
EGAF00000901399 fastq.bz2 28.9 GB
EGAF00000901400 fastq.bz2 30.5 GB
EGAF00000901401 fastq.bz2 32.5 GB
EGAF00000901402 fastq.bz2 26.9 GB
EGAF00000901403 fastq.bz2 27.6 GB
EGAF00000901404 fastq.bz2 30.3 GB
EGAF00000901405 fastq.bz2 31.1 GB
EGAF00000901406 fastq.bz2 27.5 GB
EGAF00000901407 fastq.bz2 28.3 GB
EGAF00000901408 fastq.bz2 29.4 GB
EGAF00000901409 fastq.bz2 30.3 GB
EGAF00000901410 fastq.bz2 28.8 GB
EGAF00000901411 fastq.bz2 30.5 GB
EGAF00000901412 fastq.bz2 25.6 GB
EGAF00000901413 fastq.bz2 27.1 GB
EGAF00000901414 fastq.bz2 41.1 GB
EGAF00000901415 fastq.bz2 42.0 GB
EGAF00000901416 fastq.bz2 29.6 GB
EGAF00000901417 fastq.bz2 32.0 GB
EGAF00000901418 fastq.bz2 29.7 GB
EGAF00000901419 fastq.bz2 31.8 GB
EGAF00000901420 fastq.bz2 32.2 GB
EGAF00000901421 fastq.bz2 33.1 GB
EGAF00000901422 fastq.bz2 29.6 GB
EGAF00000901423 fastq.bz2 31.3 GB
EGAF00000901424 fastq.bz2 30.9 GB
EGAF00000901425 fastq.bz2 31.4 GB
EGAF00000901426 fastq.bz2 29.0 GB
EGAF00000901427 fastq.bz2 29.7 GB
EGAF00000901428 fastq.bz2 29.4 GB
EGAF00000901429 fastq.bz2 30.5 GB
EGAF00000901430 fastq.bz2 32.1 GB
EGAF00000901431 fastq.bz2 33.7 GB
EGAF00000901432 fastq.bz2 29.6 GB
EGAF00000901433 fastq.bz2 30.4 GB
EGAF00000901434 fastq.bz2 28.9 GB
EGAF00000901435 fastq.bz2 29.9 GB
EGAF00000901436 fastq.bz2 30.8 GB
EGAF00000901437 fastq.bz2 31.7 GB
EGAF00000901438 fastq.bz2 29.1 GB
EGAF00000901439 fastq.bz2 30.3 GB
EGAF00000901440 fastq.bz2 36.4 GB
EGAF00000901441 fastq.bz2 37.3 GB
EGAF00000901442 fastq.bz2 28.2 GB
EGAF00000901443 fastq.bz2 28.9 GB
EGAF00000901444 fastq.bz2 34.0 GB
EGAF00000901445 fastq.bz2 35.7 GB
EGAF00000901446 fastq.bz2 30.3 GB
EGAF00000901447 fastq.bz2 31.2 GB
EGAF00000901448 fastq.bz2 29.3 GB
EGAF00000901449 fastq.bz2 29.8 GB
EGAF00000901450 fastq.bz2 37.4 GB
EGAF00000901451 fastq.bz2 38.3 GB
EGAF00000901452 fastq.bz2 30.5 GB
EGAF00000901453 fastq.bz2 31.4 GB
EGAF00000901454 fastq.bz2 28.9 GB
EGAF00000901455 fastq.bz2 29.8 GB
EGAF00000901456 fastq.bz2 23.8 GB
EGAF00000901457 fastq.bz2 24.8 GB
EGAF00000901458 fastq.bz2 47.0 GB
EGAF00000901459 fastq.bz2 48.2 GB
EGAF00000902950 fastq.gz 6.7 GB
EGAF00000902951 fastq.gz 6.7 GB
EGAF00000902952 fastq.gz 6.9 GB
EGAF00000902953 fastq.gz 6.2 GB
EGAF00000902954 fastq.gz 6.2 GB
EGAF00000902955 fastq.gz 6.3 GB
EGAF00000902956 fastq.gz 7.1 GB
EGAF00000902957 fastq.gz 5.6 GB
EGAF00000902958 fastq.gz 6.8 GB
EGAF00000902959 fastq.gz 6.3 GB
EGAF00000902960 fastq.gz 6.6 GB
EGAF00000902961 fastq.gz 6.0 GB
EGAF00000902962 fastq.gz 7.2 GB
EGAF00000902963 fastq.gz 6.9 GB
EGAF00000902964 fastq.gz 6.0 GB
EGAF00000902965 fastq.gz 6.6 GB
EGAF00000902966 fastq.gz 6.3 GB
EGAF00000902967 fastq.gz 6.7 GB
EGAF00000902968 fastq.gz 5.9 GB
EGAF00000902969 fastq.gz 7.5 GB
378 Files (3.7 TB)