TERT rearrangements are frequent in neuroblastoma and identify aggressive tumors
Whole genome sequencing detected structural rearrangements of TERT in 17/75 high stage neuroblastoma with 5 cases resulting from chromothripsis. Rearrangements were associated with increased TERT expression and targeted immediate up- and down-stream regions of TERT, placing in 7 cases a super-enhancer close to the breakpoints. TERT rearrangements (23%), ATRX deletions (11%) and MYCN amplifications (37%) identify three almost non-overlapping groups of high stage neuroblastoma, each associated with very poor prognosis. This submission contains all newly sequenced samples only.study_refcenter AMC
- 23/10/2015
- 42 samples
- DAC: EGAC00001000047
Policy for EGAS00001001479
European Genome-Phenome Archivec/o European Bioinformatics InstituteWellcome Trust Genome CampusHinxtonCambridgeCB10 1SDUnited KingdomTo whom it may concern,This document refers to the data set, EGAS00001001479, which has been submitted to the European Genome Archive (EGA) for the restricted access by legitimate academic institutions that have agreed to comply with the terms of a Data Access Agreement drafted by the Consortium Data Access Committee (CDAC) of the AMC Neuroblastoma Study Group. There are a number of steps that a researcher must take to obtain access to this data and the process is overseen by our Data Access Committee, called AMC Neuroblastoma Study Group Data Access Committee (r.versteeg@amc.uva.nl). Prof. Dr. Rogier Versteeg is head of the dept of Oncogenomics, Academic Medical Center, Amsterdam and is authorized to approve researchers to have encrypted access to the data submitted to the EGA. Please be advised that Dr. Jan Koster (Jankoster@amc.uva.nl) is authorized to upload data to the EGA for archiving and distribution as part of your submission process, which will enable approved researchers to have encrypted access to the data. We can confirm that this submission is consistent with the informed consent of the participants of the study or has been granted ethical approval and is in accordance with the applicable laws and regulations.Sincerely,Prof. Dr. Rogier Versteeg
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
Study ID | Study Title | Study Type |
---|---|---|
EGAS00001001479 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
ID | File Type | Size | Located in | |
---|---|---|---|---|
EGAF00000892161 | tar | 58.9 GB | ||
EGAF00000892162 | tar | 56.8 GB | ||
EGAF00000892163 | tar | 67.2 GB | ||
EGAF00000892164 | tar | 66.3 GB | ||
EGAF00000892165 | tar | 66.2 GB | ||
EGAF00000892166 | tar | 56.2 GB | ||
EGAF00000892167 | tar | 65.7 GB | ||
EGAF00000892168 | tar | 66.8 GB | ||
EGAF00000892169 | tar | 65.4 GB | ||
EGAF00000892170 | tar | 65.8 GB | ||
EGAF00000892171 | tar | 55.0 GB | ||
EGAF00000892172 | tar | 55.7 GB | ||
EGAF00000892173 | tar | 54.8 GB | ||
EGAF00000892174 | tar | 56.9 GB | ||
EGAF00000892175 | tar | 80.4 GB | ||
EGAF00000892176 | tar | 53.8 GB | ||
EGAF00000892177 | tar | 65.3 GB | ||
EGAF00000892178 | tar | 81.3 GB | ||
EGAF00000892179 | tar | 65.7 GB | ||
EGAF00000892180 | tar | 66.4 GB | ||
EGAF00000892181 | tar | 58.8 GB | ||
EGAF00000892182 | tar | 66.6 GB | ||
EGAF00000892183 | tar | 66.1 GB | ||
EGAF00000892184 | tar | 67.0 GB | ||
EGAF00000892185 | tar | 67.2 GB | ||
EGAF00000892186 | tar | 67.2 GB | ||
EGAF00000892187 | tar | 66.8 GB | ||
EGAF00000892188 | tar | 78.0 GB | ||
EGAF00000892189 | tar | 66.5 GB | ||
EGAF00000892190 | tar | 67.3 GB | ||
EGAF00000892191 | tar | 88.6 GB | ||
EGAF00000892192 | tar | 57.5 GB | ||
EGAF00000892193 | tar | 59.0 GB | ||
EGAF00000892194 | tar | 56.3 GB | ||
EGAF00000892195 | tar | 57.3 GB | ||
EGAF00000892196 | tar | 56.2 GB | ||
EGAF00000892197 | tar | 81.1 GB | ||
EGAF00000892198 | tar | 64.9 GB | ||
EGAF00000892199 | tar | 65.9 GB | ||
EGAF00000892200 | tar | 89.0 GB | ||
EGAF00000892201 | tar | 58.0 GB | ||
EGAF00000892202 | tar | 58.7 GB | ||
42 Files (2.7 TB) |