Targeted exome DNA sequencing of matched brain tumor-normal pairs (ICGC)
Illumina HiSeq sequence data (with >80x coverage) were aligned to the hg19 human reference genome assembly using BWA (Li and Durbin, 2009); duplicate reads were removed from the final BAM file. No realignment or recalibration was performed.
- 27/05/2015
- 78 samples
- DAC: EGAC00001000010
- Technology: Illumina HiSeq 2000
- HMB DUO:0000006 (version: 2021-02-23)health or medical or biomedical researchThis data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.
- NPUNCU DUO:0000018 (version: 2021-02-23)not for profit, non commercial use onlyThis data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.
- PS DUO:0000027 (version: 2021-02-23)project specific restrictionThis data use modifier indicates that use is limited to use within an approved project.
- GRU DUO:0000042 (version: 2021-02-23)general research useThis data use permission indicates that use is allowed for general research use for any research purpose.
ICGC Data Access
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001000215 | Whole Genome Sequencing | |
| EGAS00001000607 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00000073425 | bam | 579.5 MB | ||
| EGAF00000073430 | bam | 2.1 GB | ||
| EGAF00000073443 | bam | 832.6 MB | ||
| EGAF00000073448 | bam | 517.8 MB | ||
| EGAF00000073449 | bam | 1.0 GB | ||
| EGAF00000073470 | bam | 802.1 MB | ||
| EGAF00000073473 | bam | 664.6 MB | ||
| EGAF00000073481 | bam | 874.1 MB | ||
| EGAF00000073485 | bam | 733.7 MB | ||
| EGAF00000073493 | bam | 734.8 MB | ||
| EGAF00000073500 | bam | 1.9 GB | ||
| EGAF00000073516 | bam | 930.9 MB | ||
| EGAF00000073521 | bam | 971.5 MB | ||
| EGAF00000073523 | bam | 925.7 MB | ||
| EGAF00000073527 | bam | 666.4 MB | ||
| EGAF00000073535 | bam | 609.6 MB | ||
| EGAF00000073546 | bam | 793.8 MB | ||
| EGAF00000073561 | bam | 751.9 MB | ||
| EGAF00000073566 | bam | 738.4 MB | ||
| EGAF00000073575 | bam | 1.7 GB | ||
| EGAF00000073590 | bam | 1.0 GB | ||
| EGAF00000073597 | bam | 675.4 MB | ||
| EGAF00000073607 | bam | 692.6 MB | ||
| EGAF00000073618 | bam | 1.3 GB | ||
| EGAF00000323063 | bam | 307.5 MB | ||
| EGAF00000323064 | bam | 342.7 MB | ||
| EGAF00000323065 | bam | 337.3 MB | ||
| EGAF00000323066 | bam | 366.6 MB | ||
| EGAF00000323067 | bam | 369.0 MB | ||
| EGAF00000323141 | bam | 4.4 GB | ||
| EGAF00000323142 | bam | 4.7 GB | ||
| EGAF00000323143 | bam | 5.3 GB | ||
| EGAF00000323144 | bam | 4.2 GB | ||
| EGAF00000323145 | bam | 4.5 GB | ||
| EGAF00000323146 | bam | 315.9 MB | ||
| EGAF00000323147 | bam | 275.5 MB | ||
| EGAF00000323148 | bam | 323.5 MB | ||
| EGAF00000323149 | bam | 301.9 MB | ||
| EGAF00000323150 | bam | 338.5 MB | ||
| EGAF00000323151 | bam | 313.7 MB | ||
| EGAF00000323152 | bam | 357.2 MB | ||
| EGAF00000323153 | bam | 288.3 MB | ||
| EGAF00000323154 | bam | 380.6 MB | ||
| EGAF00000323155 | bam | 399.6 MB | ||
| EGAF00000323156 | bam | 424.1 MB | ||
| EGAF00000323157 | bam | 444.7 MB | ||
| EGAF00000323158 | bam | 262.4 MB | ||
| EGAF00000323159 | bam | 283.4 MB | ||
| EGAF00000323160 | bam | 309.4 MB | ||
| EGAF00000323161 | bam | 284.1 MB | ||
| EGAF00000323162 | bam | 246.4 MB | ||
| EGAF00000323163 | bam | 296.3 MB | ||
| EGAF00000323164 | bam | 249.6 MB | ||
| EGAF00000323165 | bam | 348.8 MB | ||
| EGAF00000323166 | bam | 355.5 MB | ||
| EGAF00000323167 | bam | 257.1 MB | ||
| EGAF00000323168 | bam | 341.4 MB | ||
| EGAF00000323169 | bam | 320.5 MB | ||
| EGAF00000323170 | bam | 338.1 MB | ||
| EGAF00000323171 | bam | 287.7 MB | ||
| EGAF00000323172 | bam | 301.1 MB | ||
| EGAF00000323173 | bam | 262.2 MB | ||
| EGAF00000323174 | bam | 300.1 MB | ||
| EGAF00000323175 | bam | 373.7 MB | ||
| EGAF00000323176 | bam | 368.7 MB | ||
| EGAF00000323177 | bam | 228.5 MB | ||
| EGAF00000323178 | bam | 293.6 MB | ||
| EGAF00000323179 | bam | 295.0 MB | ||
| EGAF00000323180 | bam | 261.0 MB | ||
| EGAF00000323181 | bam | 331.6 MB | ||
| EGAF00000323182 | bam | 303.7 MB | ||
| EGAF00000323183 | bam | 357.5 MB | ||
| EGAF00000323184 | bam | 272.6 MB | ||
| EGAF00000323185 | bam | 306.4 MB | ||
| EGAF00000323186 | bam | 366.1 MB | ||
| EGAF00000323187 | bam | 323.4 MB | ||
| EGAF00000323188 | bam | 368.5 MB | ||
| EGAF00000323189 | bam | 388.7 MB | ||
| 78 Files (61.3 GB) | ||||