Whole Genome DNA Sequencing of matched brain tumor-normal pairs (ICGC)
Illumina HiSeq sequence data (with >30x coverage) were aligned to the hg19 human reference genome assembly using BWA (Li and Durbin, 2009); duplicate reads were removed from the final BAM file. No realignment or recalibration was performed.
- 17/07/2015
- 90 samples
- DAC: EGAC00001000010
- Technologies: Illumina Genome Analyzer IIx, Illumina HiSeq 2000
- HMB DUO:0000006 (version: 2021-02-23)health or medical or biomedical researchThis data use permission indicates that use is allowed for health/medical/biomedical purposes; does not include the study of population origins or ancestry.
- NPUNCU DUO:0000018 (version: 2021-02-23)not for profit, non commercial use onlyThis data use modifier indicates that use of the data is limited to not-for-profit organizations and not-for-profit use, non-commercial use.
- PS DUO:0000027 (version: 2021-02-23)project specific restrictionThis data use modifier indicates that use is limited to use within an approved project.
- GRU DUO:0000042 (version: 2021-02-23)general research useThis data use permission indicates that use is allowed for general research use for any research purpose.
ICGC Data Access
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001000085 | Whole Genome Sequencing | |
| EGAS00001000215 | Whole Genome Sequencing | |
| EGAS00001000607 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00000067999 | bam | 16.0 GB | ||
| EGAF00000068000 | bam | 16.3 GB | ||
| EGAF00000068001 | bam | 16.2 GB | ||
| EGAF00000068002 | bam | 16.3 GB | ||
| EGAF00000068003 | bam | 19.8 GB | ||
| EGAF00000068004 | bam | 16.3 GB | ||
| EGAF00000068008 | bam | 19.1 GB | ||
| EGAF00000068009 | bam | 16.4 GB | ||
| EGAF00000068010 | bam | 15.6 GB | ||
| EGAF00000068011 | bam | 15.5 GB | ||
| EGAF00000068012 | bam | 15.9 GB | ||
| EGAF00000068013 | bam | 16.5 GB | ||
| EGAF00000068014 | bam | 11.6 GB | ||
| EGAF00000068015 | bam | 16.5 GB | ||
| EGAF00000068016 | bam | 16.8 GB | ||
| EGAF00000068017 | bam | 16.4 GB | ||
| EGAF00000068018 | bam | 16.1 GB | ||
| EGAF00000068019 | bam | 16.2 GB | ||
| EGAF00000068020 | bam | 16.2 GB | ||
| EGAF00000068021 | bam | 5.7 GB | ||
| EGAF00000068022 | bam | 7.3 GB | ||
| EGAF00000068023 | bam | 5.3 GB | ||
| EGAF00000068024 | bam | 5.4 GB | ||
| EGAF00000068025 | bam | 5.5 GB | ||
| EGAF00000068026 | bam | 5.8 GB | ||
| EGAF00000068027 | bam | 5.5 GB | ||
| EGAF00000068028 | bam | 5.4 GB | ||
| EGAF00000068029 | bam | 7.4 GB | ||
| EGAF00000068030 | bam | 5.4 GB | ||
| EGAF00000068031 | bam | 7.5 GB | ||
| EGAF00000068032 | bam | 5.3 GB | ||
| EGAF00000068033 | bam | 5.8 GB | ||
| EGAF00000068034 | bam | 7.2 GB | ||
| EGAF00000068035 | bam | 5.8 GB | ||
| EGAF00000068036 | bam | 5.6 GB | ||
| EGAF00000068037 | bam | 5.3 GB | ||
| EGAF00000068038 | bam | 5.2 GB | ||
| EGAF00000068039 | bam | 14.7 GB | ||
| EGAF00000068040 | bam | 15.0 GB | ||
| EGAF00000068041 | bam | 11.1 GB | ||
| EGAF00000068042 | bam | 14.5 GB | ||
| EGAF00000068043 | bam | 14.9 GB | ||
| EGAF00000068044 | bam | 15.6 GB | ||
| EGAF00000068045 | bam | 1.4 GB | ||
| EGAF00000068046 | bam | 21.3 GB | ||
| EGAF00000068047 | bam | 2.2 GB | ||
| EGAF00000068050 | bam | 19.6 GB | ||
| EGAF00000068051 | bam | 18.1 GB | ||
| EGAF00000068052 | bam | 5.2 GB | ||
| EGAF00000068053 | bam | 15.0 GB | ||
| EGAF00000068054 | bam | 19.0 GB | ||
| EGAF00000068055 | bam | 7.2 GB | ||
| EGAF00000068056 | bam | 15.3 GB | ||
| EGAF00000068058 | bam | 8.0 GB | ||
| EGAF00000068059 | bam | 16.6 GB | ||
| EGAF00000073416 | bam | 102.1 GB | ||
| EGAF00000073420 | bam | 87.4 GB | ||
| EGAF00000073428 | bam | 94.8 GB | ||
| EGAF00000073429 | bam | 79.6 GB | ||
| EGAF00000073445 | bam | 129.2 GB | ||
| EGAF00000073454 | bam | 101.3 GB | ||
| EGAF00000073458 | bam | 80.1 GB | ||
| EGAF00000073460 | bam | 112.5 GB | ||
| EGAF00000073466 | bam | 90.4 GB | ||
| EGAF00000073478 | bam | 100.7 GB | ||
| EGAF00000073499 | bam | 94.6 GB | ||
| EGAF00000073524 | bam | 160.7 GB | ||
| EGAF00000073548 | bam | 104.5 GB | ||
| EGAF00000073570 | bam | 102.0 GB | ||
| EGAF00000073584 | bam | 162.6 GB | ||
| EGAF00000073611 | bam | 78.1 GB | ||
| 71 Files (2.3 TB) | ||||