ICGC Benchmarking Exercise
The main objective of this benchmark is the comparison of the full sequencing pipeline of different ICGC partners, including procedures, methods and performance of library preparation and whole-genome deep-sequencing. A secondary objective will be a follow-up comparison of data analysis pipelines for identification of germline and somatic variants subsequent to the results of the ICGC Somatic Variant Calling Pipeline Benchmark.
- 27/05/2015
- 2 samples
- DAC: EGAC00001000010
- Technology: Illumina HiSeq 2000
http://www.icgc.org/icgc/goals-structure-policies-guidelines/e1-informed-consent-access-and-ethical-oversight
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001000433 | Whole Genome Sequencing |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00000230728 | bam | 22.9 GB | ||
| EGAF00000230729 | bam | 19.8 GB | ||
| EGAF00000230730 | bam | 30.5 GB | ||
| EGAF00000230731 | bam | 30.6 GB | ||
| EGAF00000230732 | bam | 31.1 GB | ||
| EGAF00000230733 | bam | 31.2 GB | ||
| EGAF00000230734 | bam | 26.7 GB | ||
| EGAF00000230735 | bam | 27.0 GB | ||
| EGAF00000230736 | bam | 26.4 GB | ||
| EGAF00000231671 | bam | 35.1 GB | ||
| EGAF00000231672 | bam | 29.2 GB | ||
| 11 Files (310.5 GB) | ||||