Exome sequencing of blastic plasmacytoid dendritic cell neoplasms
Blastic plasmacytoid dendritic cell neoplasm (BPDCN) is a rare and aggressive haematological malignancy derived from precursors of plasmacytoid dendritic cells. Due to the rarity of BPDCNs our knowledge of their molecular pathogenesis was until recently confined to observations describing reccurent chromosomal deletions involving chromosomes 5q, 12p, 13q, 6q, 15q and 9. A recent publication went on to delineate the common deleted regions using aCGH and demonstrated that these centred around known tumour suppressor genes including CDKN2A/B (9p21.3), RB1 (12p13.2-14.3), CDKN1B (13q11-q12) and IKZF1 (7p12.2). These mutations are found recurrently in several different cancers and in most cases are thought to be involved in tumour progression rather than initiation. However, the well-defined nature and cellular ontogeny of these neoplasms suggests strongly that they share one or a few characteristic mutations as has been demonstrated for other uncommon but well-defined neoplasms such as Hairy Cell Leukemia (BRAF) and ovarian Granulosa Cell tumours (FOXL2).
- 28/04/2017
- 14 samples
- DAC: EGAC00001000205
- Technology: Illumina HiSeq 2000
- PUB DUO:0000019 (version: 2021-02-23)publication requiredThis data use modifier indicates that requestor agrees to make results of studies using the data available to the larger scientific community.
- US DUO:0000026 (version: 2021-02-23)user specific restrictionThis data use modifier indicates that use is limited to use by approved users.
- PS DUO:0000027 (version: 2021-02-23)project specific restrictionThis data use modifier indicates that use is limited to use within an approved project.
- IS DUO:0000028 (version: 2021-02-23)institution specific restrictionThis data use modifier indicates that use is limited to use within an approved institution.
- GRU DUO:0000042 (version: 2021-02-23)general research useThis data use permission indicates that use is allowed for general research use for any research purpose.
Wellcome Trust Sanger Institute Data Sharing Policy
Studies are experimental investigations of a particular phenomenon, e.g., case-control studies on a particular trait or cancer research projects reporting matching cancer normal genomes from patients.
| Study ID | Study Title | Study Type |
|---|---|---|
| EGAS00001000171 | Other |
This table displays only public information pertaining to the files in the dataset. If you wish to access this dataset, please submit a request. If you already have access to these data files, please consult the download documentation.
| ID | File Type | Size | Located in | |
|---|---|---|---|---|
| EGAF00000120862 | bam | 6.6 GB | ||
| EGAF00000120863 | bam | 6.5 GB | ||
| EGAF00000120864 | bam | 6.6 GB | ||
| EGAF00000120865 | bam | 6.4 GB | ||
| EGAF00000120866 | bam | 6.9 GB | ||
| EGAF00000120867 | bam | 4.7 GB | ||
| EGAF00000120868 | bam | 4.5 GB | ||
| EGAF00000120869 | bam | 4.3 GB | ||
| EGAF00000120870 | bam | 4.0 GB | ||
| EGAF00000120871 | bam | 4.3 GB | ||
| EGAF00000120872 | bam | 4.7 GB | ||
| EGAF00000120873 | bam | 4.4 GB | ||
| EGAF00000120874 | bam | 5.0 GB | ||
| EGAF00000120875 | bam | 4.7 GB | ||
| EGAF00000120876 | bam | 4.4 GB | ||
| EGAF00000120877 | bam | 4.2 GB | ||
| EGAF00000120878 | bam | 4.0 GB | ||
| EGAF00000120879 | bam | 4.3 GB | ||
| EGAF00000120880 | bam | 4.7 GB | ||
| EGAF00000120881 | bam | 4.4 GB | ||
| EGAF00000120882 | bam | 4.9 GB | ||
| EGAF00000121463 | bam | 4.5 GB | ||
| EGAF00000121464 | bam | 4.3 GB | ||
| EGAF00000121465 | bam | 4.1 GB | ||
| EGAF00000121466 | bam | 3.8 GB | ||
| EGAF00000121467 | bam | 4.1 GB | ||
| EGAF00000121468 | bam | 4.5 GB | ||
| EGAF00000121469 | bam | 4.2 GB | ||
| EGAF00000121470 | bam | 4.8 GB | ||
| EGAF00000126708 | bam | 6.9 GB | ||
| EGAF00000126709 | bam | 6.8 GB | ||
| EGAF00000126710 | bam | 6.9 GB | ||
| EGAF00000126711 | bam | 6.7 GB | ||
| EGAF00000126712 | bam | 7.2 GB | ||
| EGAF00000128636 | bam | 23.0 GB | ||
| 35 Files (196.5 GB) | ||||